RLG00000000524

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014518
Physical Location & Seq
Reverse (-)
1624044 .. 1624961
918 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000524

Sequence Viewer

Length: 759 bp
ATGTCGTCGAGTATTTGGGTCTTGCCTAATATTCAAGCTGATCTTGGGAGAGGACTTGCCTCGGCCAGATCTGGTCGTACTGCGGACCCTGCCGTTCACGCTGGGGACTGTGACGCTGACCCTGTTGTCACTACAGGAGATCCGGAAGCTCCAGAAAATGTTACAAAGGAGAAATTGGTTGATGAAGAACATATAGATACAGAAGACAGCCGTAGATGCAGAGGAACAGAACCACTGTCACCGCCTAAACCTCCATATGCTGGTTCGCCCAGGCTAGAGAGCACAGGGGTAAACCAGCAGCCTTTGGATCCAACCTTTCAGCAGAAGCGTAGCCTTGCAACCGTAGGTGGAGCTAATTCATTAGAAGACTTGAGCTGTGCAGGGCTTGACGGCTCGCCATGGCCAAAGGACACTGAAAAACAGCGGACAGATAGGGAAGAACAACAAGAGGATGAACAAGAGTACTACAAGCATCATCAGGCGTCACCTTTGTCAGAGATTAAGGTGGCCGATACGCGAAAGCCCATTACCCGCGCCACAGACAGGACAGCCGACGCTAGGGAAGAATATGGCGCAGGTAGAGAGGTGATTGGATGGAGGCCTGAGCAGCTGGATACAGCCGAGGAGGCACTGCTTAGAGCTGCAAGGATGTGGAAGGAGAATGCCATGCGTGGTGATCCTGATGCTCCTCAATCTAGGGTTCTCAGACTACTACTGCGTGAAAGTGGAGATTCGACTAAAGAATATGTGATCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

27.84

Weight (kDa)

4.81

Isoelectric Point (pI)

60.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014518)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02700 AT4G02140 AT4G02140
fragaria_vesca FvH4_5g39680
malus_domestica MD03G1298400.v1.1
prunus_persica Prupe.8G268800_v2.0.a1
pyrus_communis pycom03g23640
rosa_chinensis RchiOBHm_Chr7g0241981
rosa_laevigata RLG00000000524
rosa_multiflora Rmu_sc0003266.1_g000004
rosa_roxburghii Rroxscaffold_3G00218400
rosa_rugosa Rorug07G0349500
rosa_samantha Rh7AG503500 Rh7BG474700 Rh7CG520300 Rh7DG489100
rosa_wichuraiana Rw7G042580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
Acc36I ACCTGC 1 cut(s) 566
AccB7I CCANNNNNTGG 1 cut(s) 260
AccII CGCG 2 cut(s) 517, 534
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 4 cut(s) 83, 242, 424, 532
AclWI GGATC 4 cut(s) 134, 302, 315, 671
AcoI YGGCCR 3 cut(s) 63, 401, 507
AcyI GRCGYC 1 cut(s) 482
AfaI GTAC 2 cut(s) 79, 464
AfiI CCNNNNNNNGG 3 cut(s) 260, 543, 558
AgsI TTSAA 1 cut(s) 35
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 6 cut(s) 38, 149, 353, 375, 610, 641
AluI AGCT 6 cut(s) 38, 149, 353, 375, 610, 641
Alw21I GWGCWC 1 cut(s) 284
AlwI GGATC 4 cut(s) 134, 302, 315, 671
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 4 cut(s) 63, 401, 507, 599
ApeKI GCWGC 3 cut(s) 298, 607, 641
AspLEI GCGC 2 cut(s) 536, 575
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 4 cut(s) 231, 477, 598, 686
AvaII GGWCC 1 cut(s) 85
BalI TGGCCA 1 cut(s) 403
BamHI GGATCC 1 cut(s) 307
BbsI GAAGAC 2 cut(s) 210, 372
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 3 cut(s) 310, 619, 628
BccI CCATC 1 cut(s) 588
BceAI ACGGC 3 cut(s) 77, 195, 406
BciT130I CCWGG 1 cut(s) 271
BciVI GTATCC 1 cut(s) 607
BfaI CTAG 3 cut(s) 275, 558, 696
BfmI CTRYAG 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 566
BfuI GTATCC 1 cut(s) 607
BglI GCCNNNNNGGC 1 cut(s) 626
BglII AGATCT 1 cut(s) 68
BisI GCNGC 3 cut(s) 299, 608, 642
BlsI GCNGC 3 cut(s) 300, 609, 643
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 87, 309
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 3 cut(s) 206, 481, 673
BpiI GAAGAC 2 cut(s) 210, 372
BpmI CTGGAG 1 cut(s) 135
Bpu10I CCTNAGC 1 cut(s) 603
BpuEI CTTGAG 1 cut(s) 391
Bsa29I ATCGAT 1 cut(s) 753
BsaHI GRCGYC 1 cut(s) 482
BsaJI CCNNGG 4 cut(s) 60, 269, 398, 621
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 543, 558
BseAI TCCGGA 1 cut(s) 142
BseBI CCWGG 1 cut(s) 271
BseCI ATCGAT 1 cut(s) 753
BseDI CCNNGG 4 cut(s) 60, 269, 398, 621
BseGI GGATG 3 cut(s) 457, 599, 654
BseLI CCNNNNNNNGG 3 cut(s) 260, 543, 558
BseMII CTCAG 2 cut(s) 594, 718
BseRI GAGGAG 2 cut(s) 638, 678
BseXI GCAGC 3 cut(s) 310, 619, 628
BseYI CCCAGC 1 cut(s) 101
BsgI GTGCAG 1 cut(s) 399
Bsh1236I CGCG 2 cut(s) 517, 534
BshFI GGCC 4 cut(s) 65, 403, 509, 601
BshVI ATCGAT 1 cut(s) 753
BsiHKAI GWGCWC 1 cut(s) 284
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 3 cut(s) 260, 543, 558
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 667
BsnI GGCC 4 cut(s) 65, 403, 509, 601
Bsp1286I GDGCHC 1 cut(s) 284
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 6 cut(s) 40, 68, 139, 307, 676, 750
Bsp19I CCATGG 1 cut(s) 398
BspACI CCGC 4 cut(s) 83, 242, 424, 532
BspANI GGCC 4 cut(s) 65, 403, 509, 601
BspCNI CTCAG 2 cut(s) 595, 717
BspDI ATCGAT 1 cut(s) 753
BspEI TCCGGA 1 cut(s) 142
BspFNI CGCG 2 cut(s) 517, 534
BspLI GGNNCC 2 cut(s) 87, 309
BspMI ACCTGC 1 cut(s) 566
BspPI GGATC 4 cut(s) 134, 302, 315, 671
BssECI CCNNGG 4 cut(s) 60, 269, 398, 621
BssMI GATC 6 cut(s) 40, 68, 139, 307, 676, 750
BssNI GRCGYC 1 cut(s) 482
BssT1I CCWWGG 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 3 cut(s) 110, 237, 343
BstACI GRCGYC 1 cut(s) 482
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 3 cut(s) 603, 635, 704
BstDSI CCRYGG 1 cut(s) 398
BstF5I GGATG 3 cut(s) 457, 599, 654
BstFNI CGCG 2 cut(s) 517, 534
BstHHI GCGC 2 cut(s) 536, 575
BstKTI GATC 6 cut(s) 43, 71, 142, 310, 679, 753
BstMBI GATC 6 cut(s) 40, 68, 139, 307, 676, 750
BstMWI GCNNNNNNNGC 5 cut(s) 89, 98, 216, 607, 626
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 269
BstSFI CTRYAG 1 cut(s) 132
BstUI CGCG 2 cut(s) 517, 534
BstV1I GCAGC 3 cut(s) 310, 619, 628
BstV2I GAAGAC 2 cut(s) 210, 372
BstX2I RGATCY 3 cut(s) 68, 139, 307
BstYI RGATCY 3 cut(s) 68, 139, 307
Bsu15I ATCGAT 1 cut(s) 753
BsuI GTATCC 1 cut(s) 607
BsuRI GGCC 4 cut(s) 65, 403, 509, 601
BsuTUI ATCGAT 1 cut(s) 753
BtgI CCRYGG 1 cut(s) 398
BtsCI GGATG 3 cut(s) 457, 599, 654
BtsI GCAGTG 1 cut(s) 629
BtsIMutI CAGTG 3 cut(s) 233, 411, 629
BveI ACCTGC 1 cut(s) 566
Cac8I GCNNGC 1 cut(s) 395
CfoI GCGC 2 cut(s) 536, 575
Cfr13I GGNCC 1 cut(s) 85
ClaI ATCGAT 1 cut(s) 753
CseI GACGC 3 cut(s) 122, 471, 563
Csp6I GTAC 2 cut(s) 78, 463
CviAII CATG 2 cut(s) 399, 667
CviQI GTAC 2 cut(s) 78, 463
DdeI CTNAG 3 cut(s) 603, 635, 704
DpnI GATC 6 cut(s) 42, 70, 141, 309, 678, 752
DpnII GATC 6 cut(s) 40, 68, 139, 307, 676, 750
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
EaeI YGGCCR 3 cut(s) 63, 401, 507
Eco130I CCWWGG 1 cut(s) 398
Eco147I AGGCCT 1 cut(s) 601
Eco47I GGWCC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 398
FaeI CATG 2 cut(s) 402, 670
FaiI YATR 8 cut(s) 192, 194, 256, 258, 400, 570, 668, 747
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 1 cut(s) 119
FatI CATG 2 cut(s) 398, 666
FauI CCCGC 1 cut(s) 539
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 3 cut(s) 299, 608, 642
FokI GGATG 3 cut(s) 464, 606, 661
Fsp4HI GCNGC 3 cut(s) 299, 608, 642
FspBI CTAG 3 cut(s) 275, 558, 696
GlaI GCGC 2 cut(s) 535, 574
GluI GCNGC 3 cut(s) 299, 608, 642
GsaI CCCAGC 1 cut(s) 105
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 4 cut(s) 65, 403, 509, 601
HapII CCGG 1 cut(s) 143
HgaI GACGC 3 cut(s) 122, 471, 563
HhaI GCGC 2 cut(s) 536, 575
Hin1I GRCGYC 1 cut(s) 482
Hin1II CATG 2 cut(s) 402, 670
Hin6I GCGC 2 cut(s) 534, 573
HinP1I GCGC 2 cut(s) 534, 573
HinfI GANTC 1 cut(s) 731
HpaII CCGG 1 cut(s) 143
HphI GGTGA 4 cut(s) 231, 477, 598, 686
Hpy166II GTNNAC 2 cut(s) 97, 292
Hpy188I TCNGA 2 cut(s) 496, 707
Hpy188III TCNNGA 3 cut(s) 143, 152, 680
Hpy8I GTNNAC 2 cut(s) 97, 292
Hpy99I CGWCG 2 cut(s) 10, 557
HpyAV CCTTC 1 cut(s) 649
HpyCH4III ACNGT 3 cut(s) 110, 237, 343
HpyCH4V TGCA 4 cut(s) 219, 338, 380, 644
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 98, 216, 607, 626
HpyF3I CTNAG 3 cut(s) 603, 635, 704
Hsp92I GRCGYC 1 cut(s) 482
Hsp92II CATG 2 cut(s) 402, 670
HspAI GCGC 2 cut(s) 534, 573
Kpn2I TCCGGA 1 cut(s) 142
Kzo9I GATC 6 cut(s) 40, 68, 139, 307, 676, 750
LmnI GCTCC 3 cut(s) 154, 350, 691
Lsp1109I GCAGC 3 cut(s) 310, 619, 628
LweI GCATC 3 cut(s) 206, 481, 673
MaeI CTAG 3 cut(s) 275, 558, 696
MaeIII GTNAC 5 cut(s) 110, 127, 160, 237, 483
MalI GATC 6 cut(s) 42, 70, 141, 309, 678, 752
MboI GATC 6 cut(s) 40, 68, 139, 307, 676, 750
MboII GAAGA 5 cut(s) 197, 215, 377, 449, 575
MflI RGATCY 3 cut(s) 68, 139, 307
MhlI GDGCHC 1 cut(s) 284
MlsI TGGCCA 1 cut(s) 403
MluCI AATT 2 cut(s) 173, 355
MluNI TGGCCA 1 cut(s) 403
MmeI TCCRAC 1 cut(s) 335
Mox20I TGGCCA 1 cut(s) 403
MroI TCCGGA 1 cut(s) 142
MscI TGGCCA 1 cut(s) 403
MseI TTAA 2 cut(s) 501, 757
Msp20I TGGCCA 1 cut(s) 403
MspA1I CMGCKG 2 cut(s) 424, 610
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 271
Mva1269I GAATGC 1 cut(s) 667
MvaI CCWGG 1 cut(s) 271
MvnI CGCG 2 cut(s) 517, 534
MwoI GCNNNNNNNGC 5 cut(s) 89, 98, 216, 607, 626
NcoI CCATGG 1 cut(s) 398
NdeI CATATG 1 cut(s) 256
NdeII GATC 6 cut(s) 40, 68, 139, 307, 676, 750
NlaIII CATG 2 cut(s) 402, 670
NlaIV GGNNCC 2 cut(s) 87, 309
NmeAIII GCCGAG 2 cut(s) 41, 646
NmuCI GTSAC 4 cut(s) 110, 127, 237, 483
PceI AGGCCT 1 cut(s) 601
PctI GAATGC 1 cut(s) 667
PfeI GAWTC 1 cut(s) 731
PflMI CCANNNNNTGG 1 cut(s) 260
PkrI GCNGC 3 cut(s) 300, 609, 643
Psp6I CCWGG 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 101
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 87, 309
PspPI GGNCC 1 cut(s) 85
PsuI RGATCY 3 cut(s) 68, 139, 307
PvuII CAGCTG 1 cut(s) 610
RsaI GTAC 2 cut(s) 79, 464
RsaNI GTAC 2 cut(s) 78, 463
SaqAI TTAA 2 cut(s) 501, 757
SatI GCNGC 3 cut(s) 299, 608, 642
Sau3AI GATC 6 cut(s) 40, 68, 139, 307, 676, 750
Sau96I GGNCC 1 cut(s) 85
ScaI AGTACT 1 cut(s) 464
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 1 cut(s) 284
SfaNI GCATC 3 cut(s) 206, 481, 673
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 2 cut(s) 173, 355
SseBI AGGCCT 1 cut(s) 601
SsiI CCGC 4 cut(s) 83, 242, 424, 532
SspI AATATT 1 cut(s) 31
SspMI CTAG 3 cut(s) 275, 558, 696
StuI AGGCCT 1 cut(s) 601
StyD4I CCNGG 1 cut(s) 269
StyI CCWWGG 1 cut(s) 398
TaaI ACNGT 3 cut(s) 110, 237, 343
TaqI TCGA 3 cut(s) 8, 734, 753
TasI AATT 2 cut(s) 173, 355
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 1 cut(s) 731
Tru1I TTAA 2 cut(s) 501, 757
Tru9I TTAA 2 cut(s) 501, 757
TscAI CASTG 3 cut(s) 240, 418, 636
TseFI GTSAC 4 cut(s) 110, 127, 237, 483
TseI GCWGC 3 cut(s) 298, 607, 641
Tsp45I GTSAC 4 cut(s) 110, 127, 237, 483
TspDTI ATGAA 3 cut(s) 198, 348, 468
TspRI CASTG 3 cut(s) 240, 418, 636
Van91I CCANNNNNTGG 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 85
XspI CTAG 3 cut(s) 275, 558, 696
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.