AAA-type ATPase family protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G02890 AT1G02890 AT4G02480 |
| fragaria_vesca | FvH4_2g25490 FvH4_2g25490 FvH4_2g25490 |
| malus_domestica | MD03G1285800.v1.1 MD11G1305200.v1.1 MD11G1305300.v1.1 MD11G1305400.v1.1 |
| prunus_persica | Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1 |
| pyrus_communis | pycom03g22650 pycom11g26700 pycom11g26720 |
| rosa_chinensis | RchiOBHm_Chr6g0293701 |
| rosa_laevigata | RLG00000011931 |
| rosa_roxburghii | Rroxscaffold_7G00173960 |
| rosa_rugosa | Rorug06G0237500 |
| rosa_samantha | Rh6AG350200 Rh6BG357700 Rh6CG364500 Rh6DG351400 |
| rosa_wichuraiana | Rw6G030490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 3 cut(s) | 296, 310, 1772 |
| AatII | GACGTC | 2 cut(s) | 1252, 2799 |
| Acc36I | ACCTGC | 3 cut(s) | 296, 310, 1772 |
| AccB1I | GGYRCC | 1 cut(s) | 127 |
| AccI | GTMKAC | 4 cut(s) | 2329, 2436, 2944, 3408 |
| AccII | CGCG | 1 cut(s) | 3479 |
| AccIII | TCCGGA | 1 cut(s) | 2311 |
| AcsI | RAATTY | 5 cut(s) | 883, 1142, 2179, 2771, 3206 |
| AcuI | CTGAAG | 1 cut(s) | 2495 |
| AcyI | GRCGYC | 5 cut(s) | 293, 815, 1249, 2796, 3644 |
| AfaI | GTAC | 9 cut(s) | 561, 598, 1635, 1878, 1993, 2968, 3077, 3443, 3577 |
| AfeI | AGCGCT | 1 cut(s) | 1497 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 645, 749, 1076, 1847, 1859, 2939, 2969, 3009 |
| AflII | CTTAAG | 1 cut(s) | 1333 |
| AgeI | ACCGGT | 1 cut(s) | 148 |
| AjiI | CACGTC | 2 cut(s) | 68, 3161 |
| AjnI | CCWGG | 6 cut(s) | 160, 643, 1549, 2248, 2962, 3169 |
| AleI | CACNNNNGTG | 2 cut(s) | 242, 2147 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 184, 216, 549, 581 |
| Alw21I | GWGCWC | 6 cut(s) | 516, 1721, 1840, 2735, 3672, 3690 |
| Alw26I | GTCTC | 5 cut(s) | 7, 171, 251, 758, 771 |
| Ama87I | CYCGRG | 1 cut(s) | 3706 |
| Aor13HI | TCCGGA | 1 cut(s) | 2311 |
| Aor51HI | AGCGCT | 1 cut(s) | 1497 |
| AoxI | GGCC | 5 cut(s) | 224, 372, 1515, 1804, 2692 |
| ApoI | RAATTY | 5 cut(s) | 883, 1142, 2179, 2771, 3206 |
| AseI | ATTAAT | 1 cut(s) | 2052 |
| AsiGI | ACCGGT | 1 cut(s) | 148 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 709, 2771, 3206, 3605 |
| AspA2I | CCTAGG | 1 cut(s) | 1844 |
| AspLEI | GCGC | 3 cut(s) | 733, 1258, 1498 |
| AsuC2I | CCSGG | 1 cut(s) | 182 |
| AsuHPI | GGTGA | 7 cut(s) | 301, 320, 628, 1796, 2609, 2890, 3074 |
| AvaI | CYCGRG | 1 cut(s) | 3706 |
| AvaII | GGWCC | 7 cut(s) | 521, 892, 1454, 1850, 2299, 2509, 2957 |
| AvrII | CCTAGG | 1 cut(s) | 1844 |
| AxyI | CCTNAGG | 3 cut(s) | 1071, 1293, 2415 |
| BaeGI | GKGCMC | 1 cut(s) | 742 |
| BamHI | GGATCC | 3 cut(s) | 157, 1054, 1132 |
| BanI | GGYRCC | 1 cut(s) | 127 |
| BanII | GRGCYC | 4 cut(s) | 1721, 1840, 3672, 3690 |
| BbsI | GAAGAC | 6 cut(s) | 102, 1980, 2981, 3163, 3408, 3722 |
| Bbv12I | GWGCWC | 6 cut(s) | 516, 1721, 1840, 2735, 3672, 3690 |
| BceAI | ACGGC | 3 cut(s) | 458, 3241, 3326 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 93, 109, 127, 135, 143, 169, 3339, 3373 |
| BciT130I | CCWGG | 6 cut(s) | 162, 645, 1551, 2250, 2964, 3171 |
| BciVI | GTATCC | 1 cut(s) | 2308 |
| BclI | TGATCA | 2 cut(s) | 964, 3622 |
| BcnI | CCSGG | 1 cut(s) | 182 |
| BcoDI | GTCTC | 5 cut(s) | 7, 171, 251, 758, 771 |
| BfaI | CTAG | 7 cut(s) | 689, 909, 1245, 1596, 1845, 2379, 2528 |
| BfmI | CTRYAG | 5 cut(s) | 303, 2333, 2643, 2696, 2994 |
| BfoI | RGCGCY | 1 cut(s) | 1499 |
| BfrI | CTTAAG | 1 cut(s) | 1333 |
| BfuAI | ACCTGC | 3 cut(s) | 296, 310, 1772 |
| BfuI | GTATCC | 1 cut(s) | 2308 |
| BglII | AGATCT | 1 cut(s) | 3363 |
| BlnI | CCTAGG | 1 cut(s) | 1844 |
| BmcAI | AGTACT | 3 cut(s) | 561, 598, 1878 |
| Bme1390I | CCNGG | 7 cut(s) | 162, 182, 645, 1551, 2250, 2964, 3171 |
| Bme18I | GGWCC | 7 cut(s) | 521, 892, 1454, 1850, 2299, 2509, 2957 |
| BmeT110I | CYCGRG | 1 cut(s) | 3706 |
| BmgBI | CACGTC | 2 cut(s) | 68, 3161 |
| BmiI | GGNNCC | 9 cut(s) | 99, 129, 159, 366, 894, 1056, 1134, 1516, 1851 |
| BmrFI | CCNGG | 7 cut(s) | 162, 182, 645, 1551, 2250, 2964, 3171 |
| BmrI | ACTGGG | 2 cut(s) | 2212, 3229 |
| BmuI | ACTGGG | 2 cut(s) | 2212, 3229 |
| BpiI | GAAGAC | 6 cut(s) | 102, 1980, 2981, 3163, 3408, 3722 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 727, 759, 1269, 1301 |
| BpmI | CTGGAG | 5 cut(s) | 195, 560, 681, 2271, 3656 |
| Bpu10I | CCTNAGC | 2 cut(s) | 360, 2513 |
| BpuEI | CTTGAG | 5 cut(s) | 736, 2195, 2466, 3388, 3522 |
| BpuMI | CCSGG | 1 cut(s) | 182 |
| Bsa29I | ATCGAT | 1 cut(s) | 1934 |
| BsaBI | GATNNNNATC | 2 cut(s) | 169, 684 |
| BsaHI | GRCGYC | 5 cut(s) | 293, 815, 1249, 2796, 3644 |
| BsaI | GGTCTC | 2 cut(s) | 171, 251 |
| BsaWI | WCCGGW | 3 cut(s) | 148, 2185, 2311 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 549, 579, 586, 616 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 645, 749, 1076, 1847, 1859, 2939, 2969, 3009 |
| Bse118I | RCCGGY | 4 cut(s) | 100, 148, 247, 1852 |
| Bse1I | ACTGG | 6 cut(s) | 227, 1179, 2025, 2218, 2444, 3224 |
| Bse21I | CCTNAGG | 3 cut(s) | 1071, 1293, 2415 |
| Bse3DI | GCAATG | 4 cut(s) | 1903, 1954, 3561, 3683 |
| Bse8I | GATNNNNATC | 2 cut(s) | 169, 684 |
| BseAI | TCCGGA | 1 cut(s) | 2311 |
| BseBI | CCWGG | 6 cut(s) | 162, 645, 1551, 2250, 2964, 3171 |
| BseCI | ATCGAT | 1 cut(s) | 1934 |
| BseGI | GGATG | 7 cut(s) | 59, 937, 1186, 1357, 2403, 2425, 2499 |
| BseJI | GATNNNNATC | 2 cut(s) | 169, 684 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 645, 749, 1076, 1847, 1859, 2939, 2969, 3009 |
| BseMI | GCAATG | 4 cut(s) | 1903, 1954, 3561, 3683 |
| BseNI | ACTGG | 6 cut(s) | 227, 1179, 2025, 2218, 2444, 3224 |
| BseRI | GAGGAG | 1 cut(s) | 1290 |
| BseSI | GKGCMC | 1 cut(s) | 742 |
| BseYI | CCCAGC | 2 cut(s) | 3008, 3151 |
| BsgI | GTGCAG | 1 cut(s) | 1626 |
| Bsh1236I | CGCG | 1 cut(s) | 3479 |
| BshFI | GGCC | 5 cut(s) | 226, 374, 1517, 1806, 2694 |
| BshNI | GGYRCC | 1 cut(s) | 127 |
| BshTI | ACCGGT | 1 cut(s) | 148 |
| BshVI | ATCGAT | 1 cut(s) | 1934 |
| BsiHKAI | GWGCWC | 6 cut(s) | 516, 1721, 1840, 2735, 3672, 3690 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3706 |
| BsiSI | CCGG | 8 cut(s) | 101, 149, 182, 248, 1853, 2186, 2312, 3341 |
| BslFI | GGGAC | 5 cut(s) | 824, 878, 1419, 1863, 3236 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 645, 749, 1076, 1847, 1859, 2939, 2969, 3009 |
| BsmAI | GTCTC | 5 cut(s) | 7, 171, 251, 758, 771 |
| BsmBI | CGTCTC | 1 cut(s) | 7 |
| BsmFI | GGGAC | 5 cut(s) | 824, 878, 1419, 1863, 3236 |
| BsnI | GGCC | 5 cut(s) | 226, 374, 1517, 1806, 2694 |
| Bso31I | GGTCTC | 2 cut(s) | 171, 251 |
| BsoBI | CYCGRG | 1 cut(s) | 3706 |
| Bsp1286I | GDGCHC | 7 cut(s) | 516, 742, 1721, 1840, 2735, 3672, 3690 |
| Bsp13I | TCCGGA | 1 cut(s) | 2311 |
| Bsp1407I | TGTACA | 1 cut(s) | 1633 |
| Bsp19I | CCATGG | 1 cut(s) | 1978 |
| BspANI | GGCC | 5 cut(s) | 226, 374, 1517, 1806, 2694 |
| BspDI | ATCGAT | 1 cut(s) | 1934 |
| BspEI | TCCGGA | 1 cut(s) | 2311 |
| BspFNI | CGCG | 1 cut(s) | 3479 |
| BspHI | TCATGA | 2 cut(s) | 414, 3210 |
| BspLI | GGNNCC | 9 cut(s) | 99, 129, 159, 366, 894, 1056, 1134, 1516, 1851 |
| BspMAI | CTGCAG | 3 cut(s) | 307, 2337, 2700 |
| BspMI | ACCTGC | 3 cut(s) | 296, 310, 1772 |
| BspQI | GCTCTTC | 2 cut(s) | 28, 2159 |
| BspT107I | GGYRCC | 1 cut(s) | 127 |
| BspTI | CTTAAG | 1 cut(s) | 1333 |
| BspTNI | GGTCTC | 2 cut(s) | 171, 251 |
| BsrDI | GCAATG | 4 cut(s) | 1903, 1954, 3561, 3683 |
| BsrFI | RCCGGY | 4 cut(s) | 100, 148, 247, 1852 |
| BsrGI | TGTACA | 1 cut(s) | 1633 |
| BsrI | ACTGG | 6 cut(s) | 227, 1179, 2025, 2218, 2444, 3224 |
| BssAI | RCCGGY | 4 cut(s) | 100, 148, 247, 1852 |
| BssNAI | GTATAC | 1 cut(s) | 2945 |
| BssNI | GRCGYC | 5 cut(s) | 293, 815, 1249, 2796, 3644 |
| BssT1I | CCWWGG | 5 cut(s) | 84, 368, 1566, 1844, 1978 |
| Bst1107I | GTATAC | 1 cut(s) | 2945 |
| Bst2UI | CCWGG | 6 cut(s) | 162, 645, 1551, 2250, 2964, 3171 |
| Bst4CI | ACNGT | 4 cut(s) | 436, 997, 1611, 2647 |
| Bst6I | CTCTTC | 6 cut(s) | 28, 787, 2010, 2159, 2895, 3384 |
| BstACI | GRCGYC | 5 cut(s) | 293, 815, 1249, 2796, 3644 |
| BstAFI | CTTAAG | 1 cut(s) | 1333 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1409, 1649, 2704 |
| BstAUI | TGTACA | 1 cut(s) | 1633 |
| BstC8I | GCNNGC | 9 cut(s) | 249, 447, 451, 1500, 1620, 2171, 2696, 2985, 3149 |
| BstDSI | CCRYGG | 2 cut(s) | 1978, 3477 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 747 |
| BstF5I | GGATG | 7 cut(s) | 59, 937, 1186, 1357, 2403, 2425, 2499 |
| BstFNI | CGCG | 1 cut(s) | 3479 |
| BstH2I | RGCGCY | 1 cut(s) | 1499 |
| BstHHI | GCGC | 3 cut(s) | 733, 1258, 1498 |
| BstMAI | GTCTC | 5 cut(s) | 7, 171, 251, 758, 771 |
| BstNI | CCWGG | 6 cut(s) | 162, 645, 1551, 2250, 2964, 3171 |
| BstNSI | RCATGY | 2 cut(s) | 656, 3151 |
| BstSCI | CCNGG | 7 cut(s) | 160, 180, 643, 1549, 2248, 2962, 3169 |
| BstSFI | CTRYAG | 5 cut(s) | 303, 2333, 2643, 2696, 2994 |
| BstSLI | GKGCMC | 1 cut(s) | 742 |
| BstUI | CGCG | 1 cut(s) | 3479 |
| BstV2I | GAAGAC | 6 cut(s) | 102, 1980, 2981, 3163, 3408, 3722 |
| BstX2I | RGATCY | 6 cut(s) | 157, 1054, 1132, 1901, 2469, 3363 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1174 |
| BstYI | RGATCY | 6 cut(s) | 157, 1054, 1132, 1901, 2469, 3363 |
| BstZ17I | GTATAC | 1 cut(s) | 2945 |
| Bsu15I | ATCGAT | 1 cut(s) | 1934 |
| Bsu36I | CCTNAGG | 3 cut(s) | 1071, 1293, 2415 |
| BsuI | GTATCC | 1 cut(s) | 2308 |
| BsuRI | GGCC | 5 cut(s) | 226, 374, 1517, 1806, 2694 |
| BsuTUI | ATCGAT | 1 cut(s) | 1934 |
| BtgI | CCRYGG | 2 cut(s) | 1978, 3477 |
| BtgZI | GCGATG | 4 cut(s) | 266, 519, 636, 930 |
| BtrI | CACGTC | 2 cut(s) | 68, 3161 |
| BtsCI | GGATG | 7 cut(s) | 59, 937, 1186, 1357, 2403, 2425, 2499 |
| BtsI | GCAGTG | 2 cut(s) | 2291, 2370 |
| BtsIMutI | CAGTG | 6 cut(s) | 2032, 2142, 2291, 2370, 2836, 3722 |
| BveI | ACCTGC | 3 cut(s) | 296, 310, 1772 |
| Cac8I | GCNNGC | 9 cut(s) | 249, 447, 451, 1500, 1620, 2171, 2696, 2985, 3149 |
| CciI | TCATGA | 2 cut(s) | 414, 3210 |
| CfoI | GCGC | 3 cut(s) | 733, 1258, 1498 |
| Cfr10I | RCCGGY | 4 cut(s) | 100, 148, 247, 1852 |
| Cfr42I | CCGCGG | 1 cut(s) | 3480 |
| ClaI | ATCGAT | 1 cut(s) | 1934 |
| CseI | GACGC | 4 cut(s) | 301, 804, 3109, 3633 |
| Csp6I | GTAC | 9 cut(s) | 560, 597, 1634, 1877, 1992, 2967, 3076, 3442, 3576 |
| CspAI | ACCGGT | 1 cut(s) | 148 |
| CviQI | GTAC | 9 cut(s) | 560, 597, 1634, 1877, 1992, 2967, 3076, 3442, 3576 |
| Eam1104I | CTCTTC | 6 cut(s) | 28, 787, 2010, 2159, 2895, 3384 |
| EarI | CTCTTC | 6 cut(s) | 28, 787, 2010, 2159, 2895, 3384 |
| EciI | GGCGGA | 1 cut(s) | 110 |
| Ecl136II | GAGCTC | 4 cut(s) | 1719, 1838, 3670, 3688 |
| Eco130I | CCWWGG | 5 cut(s) | 84, 368, 1566, 1844, 1978 |
| Eco24I | GRGCYC | 4 cut(s) | 1721, 1840, 3672, 3690 |
| Eco31I | GGTCTC | 2 cut(s) | 171, 251 |
| Eco32I | GATATC | 2 cut(s) | 1365, 2815 |
| Eco47I | GGWCC | 7 cut(s) | 521, 892, 1454, 1850, 2299, 2509, 2957 |
| Eco47III | AGCGCT | 1 cut(s) | 1497 |
| Eco53kI | GAGCTC | 4 cut(s) | 1719, 1838, 3670, 3688 |
| Eco57I | CTGAAG | 1 cut(s) | 2495 |
| Eco81I | CCTNAGG | 3 cut(s) | 1071, 1293, 2415 |
| Eco88I | CYCGRG | 1 cut(s) | 3706 |
| EcoICRI | GAGCTC | 4 cut(s) | 1719, 1838, 3670, 3688 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 747 |
| EcoO109I | RGGNCCY | 2 cut(s) | 892, 1805 |
| EcoRI | GAATTC | 2 cut(s) | 2771, 3206 |
| EcoRII | CCWGG | 6 cut(s) | 160, 643, 1549, 2248, 2962, 3169 |
| EcoRV | GATATC | 2 cut(s) | 1365, 2815 |
| EcoT14I | CCWWGG | 5 cut(s) | 84, 368, 1566, 1844, 1978 |
| EcoT22I | ATGCAT | 1 cut(s) | 1414 |
| EcoT38I | GRGCYC | 4 cut(s) | 1721, 1840, 3672, 3690 |
| ErhI | CCWWGG | 5 cut(s) | 84, 368, 1566, 1844, 1978 |
| Esp3I | CGTCTC | 1 cut(s) | 7 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 583, 615, 766, 798, 1866, 1898, 2907, 2939 |
| FaqI | GGGAC | 5 cut(s) | 824, 878, 1419, 1863, 3236 |
| FauNDI | CATATG | 2 cut(s) | 1372, 2689 |
| FbaI | TGATCA | 2 cut(s) | 964, 3622 |
| FblI | GTMKAC | 4 cut(s) | 2329, 2436, 2944, 3408 |
| FokI | GGATG | 7 cut(s) | 46, 944, 1193, 1364, 2390, 2432, 2486 |
| FriOI | GRGCYC | 4 cut(s) | 1721, 1840, 3672, 3690 |
| FspBI | CTAG | 7 cut(s) | 689, 909, 1245, 1596, 1845, 2379, 2528 |
| GlaI | GCGC | 3 cut(s) | 732, 1257, 1497 |
| GsaI | CCCAGC | 2 cut(s) | 3012, 3155 |
| GsuI | CTGGAG | 5 cut(s) | 195, 560, 681, 2271, 3656 |
| HaeII | RGCGCY | 1 cut(s) | 1499 |
| HaeIII | GGCC | 5 cut(s) | 226, 374, 1517, 1806, 2694 |
| HapII | CCGG | 8 cut(s) | 101, 149, 182, 248, 1853, 2186, 2312, 3341 |
| HgaI | GACGC | 4 cut(s) | 301, 804, 3109, 3633 |
| HhaI | GCGC | 3 cut(s) | 733, 1258, 1498 |
| Hin1I | GRCGYC | 5 cut(s) | 293, 815, 1249, 2796, 3644 |
| Hin6I | GCGC | 3 cut(s) | 731, 1256, 1496 |
| HinP1I | GCGC | 3 cut(s) | 731, 1256, 1496 |
| HincII | GTYRAC | 4 cut(s) | 937, 1534, 2437, 2921 |
| HindII | GTYRAC | 4 cut(s) | 937, 1534, 2437, 2921 |
| HindIII | AAGCTT | 4 cut(s) | 377, 2171, 2424, 2660 |
| HinfI | GANTC | 8 cut(s) | 779, 1535, 2713, 3166, 3344, 3463, 3502, 3650 |
| HpaII | CCGG | 8 cut(s) | 101, 149, 182, 248, 1853, 2186, 2312, 3341 |
| HphI | GGTGA | 7 cut(s) | 301, 320, 628, 1796, 2609, 2890, 3074 |
| Hpy99I | CGWCG | 1 cut(s) | 118 |
| HpyCH4III | ACNGT | 4 cut(s) | 436, 997, 1611, 2647 |
| Hsp92I | GRCGYC | 5 cut(s) | 293, 815, 1249, 2796, 3644 |
| HspAI | GCGC | 3 cut(s) | 731, 1256, 1496 |
| Kpn2I | TCCGGA | 1 cut(s) | 2311 |
| KroI | GCCGGC | 1 cut(s) | 247 |
| KroNI | GCCGGC | 1 cut(s) | 249 |
| Ksp22I | TGATCA | 2 cut(s) | 964, 3622 |
| KspI | CCGCGG | 1 cut(s) | 3480 |
| LguI | GCTCTTC | 2 cut(s) | 28, 2159 |
| LmnI | GCTCC | 5 cut(s) | 370, 700, 1843, 3118, 3675 |
| MaeI | CTAG | 7 cut(s) | 689, 909, 1245, 1596, 1845, 2379, 2528 |
| MflI | RGATCY | 6 cut(s) | 157, 1054, 1132, 1901, 2469, 3363 |
| MhlI | GDGCHC | 7 cut(s) | 516, 742, 1721, 1840, 2735, 3672, 3690 |
| MlyI | GAGTC | 2 cut(s) | 773, 1529 |
| MmeI | TCCRAC | 2 cut(s) | 418, 2202 |
| Mph1103I | ATGCAT | 1 cut(s) | 1414 |
| MroI | TCCGGA | 1 cut(s) | 2311 |
| MroNI | GCCGGC | 1 cut(s) | 247 |
| MroXI | GAANNNNTTC | 4 cut(s) | 709, 2771, 3206, 3605 |
| MseI | TTAA | 9 cut(s) | 675, 1151, 1241, 1334, 2052, 2076, 3081, 3333, 3458 |
| MslI | CAYNNNNRTG | 3 cut(s) | 242, 2147, 2351 |
| MspA1I | CMGCKG | 2 cut(s) | 2701, 3479 |
| MspCI | CTTAAG | 1 cut(s) | 1333 |
| MspI | CCGG | 8 cut(s) | 101, 149, 182, 248, 1853, 2186, 2312, 3341 |
| MspR9I | CCNGG | 7 cut(s) | 162, 182, 645, 1551, 2250, 2964, 3171 |
| MvaI | CCWGG | 6 cut(s) | 162, 645, 1551, 2250, 2964, 3171 |
| MvnI | CGCG | 1 cut(s) | 3479 |
| NaeI | GCCGGC | 1 cut(s) | 249 |
| NciI | CCSGG | 1 cut(s) | 182 |
| NcoI | CCATGG | 1 cut(s) | 1978 |
| NdeI | CATATG | 2 cut(s) | 1372, 2689 |
| NgoMIV | GCCGGC | 1 cut(s) | 247 |
| NlaIV | GGNNCC | 9 cut(s) | 99, 129, 159, 366, 894, 1056, 1134, 1516, 1851 |
| NmeAIII | GCCGAG | 1 cut(s) | 2651 |
| NmuCI | GTSAC | 5 cut(s) | 289, 2027, 2398, 3452, 3472 |
| NsiI | ATGCAT | 1 cut(s) | 1414 |
| NspI | RCATGY | 2 cut(s) | 656, 3151 |
| OliI | CACNNNNGTG | 2 cut(s) | 242, 2147 |
| PaeI | GCATGC | 1 cut(s) | 3151 |
| PaeR7I | CTCGAG | 1 cut(s) | 3706 |
| PagI | TCATGA | 2 cut(s) | 414, 3210 |
| PaqCI | CACCTGC | 3 cut(s) | 296, 310, 1772 |
| PasI | CCCWGGG | 1 cut(s) | 644 |
| PciSI | GCTCTTC | 2 cut(s) | 28, 2159 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3316 |
| PdiI | GCCGGC | 1 cut(s) | 249 |
| PdmI | GAANNNNTTC | 4 cut(s) | 709, 2771, 3206, 3605 |
| PfeI | GAWTC | 6 cut(s) | 2713, 3166, 3344, 3463, 3502, 3650 |
| PfoI | TCCNGGA | 2 cut(s) | 160, 3169 |
| PinAI | ACCGGT | 1 cut(s) | 148 |
| PleI | GAGTC | 2 cut(s) | 773, 1529 |
| PpsI | GAGTC | 2 cut(s) | 773, 1529 |
| PpuMI | RGGWCCY | 1 cut(s) | 892 |
| PshBI | ATTAAT | 1 cut(s) | 2052 |
| Psp124BI | GAGCTC | 4 cut(s) | 1721, 1840, 3672, 3690 |
| Psp5II | RGGWCCY | 1 cut(s) | 892 |
| Psp6I | CCWGG | 6 cut(s) | 160, 643, 1549, 2248, 2962, 3169 |
| PspFI | CCCAGC | 2 cut(s) | 3008, 3151 |
| PspGI | CCWGG | 6 cut(s) | 160, 643, 1549, 2248, 2962, 3169 |
| PspN4I | GGNNCC | 9 cut(s) | 99, 129, 159, 366, 894, 1056, 1134, 1516, 1851 |
| PspPPI | RGGWCCY | 1 cut(s) | 892 |
| PspXI | VCTCGAGB | 1 cut(s) | 3706 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1984, 2016 |
| PstI | CTGCAG | 3 cut(s) | 307, 2337, 2700 |
| PsuI | RGATCY | 6 cut(s) | 157, 1054, 1132, 1901, 2469, 3363 |
| PvuII | CAGCTG | 1 cut(s) | 2701 |
| RsaI | GTAC | 9 cut(s) | 561, 598, 1635, 1878, 1993, 2968, 3077, 3443, 3577 |
| RsaNI | GTAC | 9 cut(s) | 560, 597, 1634, 1877, 1992, 2967, 3076, 3442, 3576 |
| RseI | CAYNNNNRTG | 3 cut(s) | 242, 2147, 2351 |
| SacI | GAGCTC | 4 cut(s) | 1721, 1840, 3672, 3690 |
| SacII | CCGCGG | 1 cut(s) | 3480 |
| SalI | GTCGAC | 1 cut(s) | 2435 |
| SapI | GCTCTTC | 2 cut(s) | 28, 2159 |
| SaqAI | TTAA | 9 cut(s) | 675, 1151, 1241, 1334, 2052, 2076, 3081, 3333, 3458 |
| SbfI | CCTGCAGG | 1 cut(s) | 307 |
| ScaI | AGTACT | 3 cut(s) | 561, 598, 1878 |
| SchI | GAGTC | 2 cut(s) | 773, 1529 |
| ScrFI | CCNGG | 7 cut(s) | 162, 182, 645, 1551, 2250, 2964, 3171 |
| SdaI | CCTGCAGG | 1 cut(s) | 307 |
| SduI | GDGCHC | 7 cut(s) | 516, 742, 1721, 1840, 2735, 3672, 3690 |
| SfcI | CTRYAG | 5 cut(s) | 303, 2333, 2643, 2696, 2994 |
| Sfr274I | CTCGAG | 1 cut(s) | 3706 |
| Sfr303I | CCGCGG | 1 cut(s) | 3480 |
| SgrBI | CCGCGG | 1 cut(s) | 3480 |
| SinI | GGWCC | 7 cut(s) | 521, 892, 1454, 1850, 2299, 2509, 2957 |
| SlaI | CTCGAG | 1 cut(s) | 3706 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 242, 2147, 2351 |
| SmlI | CTYRAG | 7 cut(s) | 715, 1333, 2174, 2481, 3367, 3537, 3706 |
| SmoI | CTYRAG | 7 cut(s) | 715, 1333, 2174, 2481, 3367, 3537, 3706 |
| SphI | GCATGC | 1 cut(s) | 3151 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 307 |
| SspI | AATATT | 4 cut(s) | 1084, 2194, 2491, 3028 |
| SspMI | CTAG | 7 cut(s) | 689, 909, 1245, 1596, 1845, 2379, 2528 |
| SstI | GAGCTC | 4 cut(s) | 1721, 1840, 3672, 3690 |
| StyD4I | CCNGG | 7 cut(s) | 160, 180, 643, 1549, 2248, 2962, 3169 |
| StyI | CCWWGG | 5 cut(s) | 84, 368, 1566, 1844, 1978 |
| TaaI | ACNGT | 4 cut(s) | 436, 997, 1611, 2647 |
| TaqI | TCGA | 9 cut(s) | 335, 1004, 1789, 1934, 2436, 2775, 3359, 3656, 3707 |
| TaqII | GACCGA | 1 cut(s) | 275 |
| TatI | WGTACW | 6 cut(s) | 559, 596, 1633, 1876, 1991, 3575 |
| TauI | GCSGC | 3 cut(s) | 92, 95, 3482 |
| TfiI | GAWTC | 6 cut(s) | 2713, 3166, 3344, 3463, 3502, 3650 |
| Tru1I | TTAA | 9 cut(s) | 675, 1151, 1241, 1334, 2052, 2076, 3081, 3333, 3458 |
| Tru9I | TTAA | 9 cut(s) | 675, 1151, 1241, 1334, 2052, 2076, 3081, 3333, 3458 |
| TscAI | CASTG | 6 cut(s) | 2032, 2149, 2298, 2370, 2836, 3729 |
| TseFI | GTSAC | 5 cut(s) | 289, 2027, 2398, 3452, 3472 |
| Tsp45I | GTSAC | 5 cut(s) | 289, 2027, 2398, 3452, 3472 |
| TspGWI | ACGGA | 3 cut(s) | 531, 1603, 2492 |
| TspRI | CASTG | 6 cut(s) | 2032, 2149, 2298, 2370, 2836, 3729 |
| Vha464I | CTTAAG | 1 cut(s) | 1333 |
| VpaK11BI | GGWCC | 7 cut(s) | 521, 892, 1454, 1850, 2299, 2509, 2957 |
| VspI | ATTAAT | 1 cut(s) | 2052 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 747 |
| XapI | RAATTY | 5 cut(s) | 883, 1142, 2179, 2771, 3206 |
| XceI | RCATGY | 2 cut(s) | 656, 3151 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1037, 1174, 1385 |
| XhoI | CTCGAG | 1 cut(s) | 3706 |
| XmaJI | CCTAGG | 1 cut(s) | 1844 |
| XmiI | GTMKAC | 4 cut(s) | 2329, 2436, 2944, 3408 |
| XmnI | GAANNNNTTC | 4 cut(s) | 709, 2771, 3206, 3605 |
| XspI | CTAG | 7 cut(s) | 689, 909, 1245, 1596, 1845, 2379, 2528 |
| ZraI | GACGTC | 2 cut(s) | 1250, 2797 |
| ZrmI | AGTACT | 3 cut(s) | 561, 598, 1878 |
| Zsp2I | ATGCAT | 1 cut(s) | 1414 |