Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006487

Physical Location & Seq

Genomic Coordinates Reverse (-)

13861013 .. 13870329

Gene Structure 9317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011931

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3702 bp

ATGGTTGAAACCAGACGCAGCTCTTCTTCCAAACGCGCCCTATCCGCCTCTCCTCCCCCCAATCCCAAACGCTCAAAGGCCTCTGATGCTTCGTCATCCAACAACGGCGTTCGGAGCGGCACGCCGACGGAGCCTCTGGGTCCGATAAAGGAATCTGAGTCGCAATCTCCTGACCTCGAGCTGCGATCCCCTGATCCGCAGACAGCTGATTCCTTGAAGGCCGTTAACGGCTCTGATGCGGCGGAGAGAGCCCCTGATGACGTGGCGGAAGCGGAGGCCGCCGCCTTGGGGTCGCCGCAGCCTTTGGGCGAGACTGCAGTTCGTTCTGGGCTGAAGAGGACTAAGAAGGTTCCTAAGAGGAGTGCGAAATCGAATCAGAAACTGGCGTGGGGACAGCTTCTTTCCCAGTGCTCTAAGAACCCGCATCAGTTTCTTTGTGATACTTTCACTGTTGGCCAAAGTCGTGAATGCAATTTATGTCTTAAAGATCCATCCGTTAGTACTACACTCTGTAAACTTAAGCCGGGTGAAGGTTCGTCAACTGCAGAAATGGAAATTACAGGGGGTAAAGGTTATGTTCAAGTTAATGGCAAGGTTTACCCACAAGATTCTAAGGTTATTCTAATTGGAGGCGACGAGGTTGTTTTTGGTTCATCTGGAAAACATGCATATATTTTCATGCAGCTCACTAATGGTAATATAGCTGCTCAAGGCATTCCTTCAATTAGCATATTAGAAACCCAGAGCGCTCCGGTTAATGGGTTACATATTGAGGCAAGATCCAGGGACCCCACAGTTGATGGGGCATCTATATTAGCATCTATGTCAAATGTGCCAAATAACTTGTCACTACTTCCAGCATCTGCTAAAGCTGGTGGTGATCTGCAACAGGATGCCGATATGCCTTCTACTCCTTCTGGTTGCGGAGGGTCAGACGATCGTACTCCGGACACTGAGATGAAGGATAGTACTAATGTTAATGATGGTGACAAAGATATTGTTTCATTTCCTGACACTGCCAACGAAAACCCCAATGTTGATAACCTTGCATTGGACATGGATACTGAAACGGGAAAGGCCTCTGGGACTAGGTGGCCGCCTCTTCTCCGAATGTTGGGTTCTGGTGCCAAATTTGATTTCAGTGGCAGCCTTTCAAAGATTCTTAATGAGCCAAGAGAACTTAGAGAACTCCAGGATTTTGATCCTGCAATTTCGCTGTCAACTAGGCGACAAGCATTTAGAGATAAACTGCAACAAGGAATTCTAAATCCTAATGATATTGAAGTCACATTTGAAAGTTTCCCATACTACCTAAGTGACACAACCAAAAATGTTCTGATTGCTTCCATCCACATTCATTTGAAGTGTAATAAGTTTGCAAAGTATGCCTCAGATCTCCCAACTGGGAGCCCACGTATACTACTATCTGGTCCTGCAGGATCAGAGATATATCAGGAAACTTTGGCAAAGGCACTTGCGAATCATTTTGGTGCTAGATTGCTAATTGTCGACTCTCTCGTCATGCCTGGTGGACCAGCATCCCAGAATGCTGATTCTTTTAAAGAAGCAGCTAGGGCCGAAAGAGTTTCCATGTTCACTAAACGAGCTGCACAGGCTGCTGGATTAAGGCATAAGAAACCAACCTCCAGTGTTGAGGCTGAAATTACAGGTGGATCCACTCTAAGCTCGCAAGCTCTGCCAAAGCAGGAGACATCCACTGCATCCTCCAAAGGCATTACATTTAAGCAAGGTGATAGGGTGAAATTTGTCGGTGGCGCTGCGCTTTCTTCGCTGCATAATCCTCTAAGGGGACCACAATACGGTTACAAAGGCAAAGTTGTTCTTCCTTTTGAAGAGAACGGGTCATCTAAAATTGGTGTTAGATTTGAGAAAACGATACCAGATGGCAATGATCTTGGTGGTTTTTGCGAAGAAGATCGTGGTTTTTTCTGTCCTGCTAATCATCTAATTCGCATTGATGTTTCGGGAGGTGATGATATTGATAAGCTTGCTATTAATGAACTTCTTGAGGTTGCATCAAATGAGAGTAAAAGTATGCCTCTAATATTGTTTATGAAAGATGTGGAGAAGGCAATGATAGGTAATTCAGATGCATTTATTCACTTCAAGAGTAAACTTGAAAGTTTGCCAGAGAATGTCGTTATAATTGGCTCCCATACCCAGTTGGACAATCGTAAGGAAAAGTCCCATCCTGGTGGTCTTCTGTTTACGAAGTTCGGTTTTAGCCAAACAGCTTTGCTCGATCTTGCTTTTCCGGATAACCTTGGTAGGCTGCAAGATAGGAGCAAAGAAACCCCTAAATCATTGAAGAATCTTACTCGGATTTTTCCCAACAAGGTGACAATACAGCTGCCTCAGGATGAAGGTCTACTTTCAGACTGGAAGCAGCAGTTGGATCGTGATGTTGAAACTCTGAAAGCACAGTCAAATATTGTTAGCATTCGCACAGTTCTTAACCGTATTAATCTGGATTGCCCCGACCTTGAAAGTCTGTCCGTTAAGGATCCTGCCCTTACAACTGAAAGTGTCGAAAAAATAATAGGCTGGGCTTTGAGTTATCACTCTATGCATTGTTCTGAGGCTGAAGTTAAAGATGGAAAACTTGTCATTTCTACTGAAAGTCTTAAATATGGACTGAACATTCTTCAGGGCATTCAAAGTGAGAACAAAAGCACAAAGAAGTCACTGAAGGATGTGGTCACTGGAAACGAGTTTGAGAAAAAGCTTCTTGCTGATGTTATTCCACCGAGCGACATTGGGGTTACTTTTGATGACATCGGGGCCTTGGAAAATGTGAAGGACACACTGAAGGAGTTGGTGATGCTTCCTCTTCAGAGGCCTGAACTGTTTAGCAAAGGACAGCTGACTAAGCCTTGCAAAGGAATCTTGCTGTTTGGTCCTCCTGGTACTGGAAAAACTATGCTTGCGAAGGCTGTTGCAACTGAAGCTGGTGCAAACTTTATTAACATATCAATGTCAAGTATTACTTCAAAGTGGTTTGGGGAAGGAGAGAAGTACGTTAAAGCAGTGTTCTCGTTAGCTAGTAAAATTGCTCCTAGTGTTGTATTTGTTGACGAGGTTGACAGCATGTTAGGAAGACGTGAAAATCCTGGGGAACATGAGGCTATGCGTAAAATGAAAAACGAGTTCATGGTGAACTGGGATGGTCTACGTACAAAGGATAAAGAACGTGTATTGGTACTCGCTGCTACTAACAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTTCCGAGGAGGTTGATGGTTAACTTGCCAGATGCTCCAAACAGAGAAAAGATACTGAGAGTTATATTAGCCAAAGAAGATTTGGATCCTGACGTTGATTTGGAAGGAGTTGCCAGTATGACAGATGGGTATTCTGGAAGTGACCTAAAGAACCTTTGTGTTACTGCAGCTCACCGTCCTATCAGGGAAATCTTAGAAAAAGAAAAGAAGGAGAGAAGTTTAGCTTTGGAGGAGAACAGACCTGTACCATCGTTGTATTGCAGTGCTGACATCCGCCCTTTAAAGATGGAGGATTTTAAACATGCGCATGAACAGGTCTGTGCAAGTGTGTCATCTGAGTCGACAAACATGAGTGAGCTCCTCCAATGGAATGACTTGTATGGAGAAGGTGGATCAAGAAAGAAGAAATCGCTCAGCTATTTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002090 GO:0002092 GO:0003008 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007610 GO:0007611 GO:0007612 GO:0007613 GO:0008150 GO:0009893 GO:0010604 GO:0010646 GO:0010648 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0023051 GO:0023057 GO:0030100 GO:0031323 GO:0031325 GO:0032501 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044456 GO:0044459 GO:0044464 GO:0045202 GO:0045211 GO:0045807 GO:0048259 GO:0048260 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050804 GO:0050805 GO:0050877 GO:0050890 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051966 GO:0051967 GO:0060255 GO:0060627 GO:0065007 GO:0071944 GO:0097060 GO:0098590 GO:0098794 GO:0099177

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FHA

Protein Analysis

1234

Amino Acids

134.02

Weight (kDa)

6.17

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7751	PF24933	830 - 890	1.1e-25	Domain of unknown function (DUF7751)
AAA	PF00004	969 - 1099	8.7e-38	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	1122 - 1158	3.5e-13	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02890 AT1G02890 AT4G02480
fragaria_vesca	FvH4_2g25490 FvH4_2g25490 FvH4_2g25490
malus_domestica	MD03G1285800.v1.1 MD11G1305200.v1.1 MD11G1305300.v1.1 MD11G1305400.v1.1
prunus_persica	Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1
pyrus_communis	pycom03g22650 pycom11g26700 pycom11g26720
rosa_chinensis	RchiOBHm_Chr6g0293701
rosa_laevigata	RLG00000011931
rosa_roxburghii	Rroxscaffold_7G00173960
rosa_rugosa	Rorug06G0237500
rosa_samantha	Rh6AG350200 Rh6BG357700 Rh6CG364500 Rh6DG351400
rosa_wichuraiana	Rw6G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2165
AasI	GACNNNNNNGTC	1 cut(s)	1517
Acc16I	TGCGCA	1 cut(s)	3579
AccB1I	GGYRCC	1 cut(s)	1124
AccBSI	CCGCTC	1 cut(s)	117
AccI	GTMKAC	5 cut(s)	1417, 1509, 2389, 3190, 3614
AccII	CGCG	1 cut(s)	36
AccIII	TCCGGA	2 cut(s)	946, 2275
AcoI	YGGCCR	2 cut(s)	454, 1094
AcsI	RAATTY	3 cut(s)	1130, 1260, 1763
AcuI	CTGAAG	7 cut(s)	353, 2625, 2651, 2729, 2837, 2849, 2985
AfaI	GTAC	8 cut(s)	502, 943, 970, 2929, 3038, 3196, 3222, 3519
AfeI	AGCGCT	1 cut(s)	748
AflII	CTTAAG	1 cut(s)	518
AflIII	ACRYGT	1 cut(s)	3211
AjiI	CACGTC	2 cut(s)	262, 3122
AjnI	CCWGG	6 cut(s)	782, 1191, 1525, 2212, 2923, 3130
AjuI	GAANNNNNNNTTGG	4 cut(s)	1121, 1153, 2396, 2428
Alw21I	GWGCWC	2 cut(s)	413, 3633
Alw26I	GTCTC	2 cut(s)	305, 1703
AlwNI	CAGNNNCTG	2 cut(s)	382, 863
Ama87I	CYCGRG	1 cut(s)	176
Aor13HI	TCCGGA	2 cut(s)	946, 2275
Aor51HI	AGCGCT	1 cut(s)	748
ApoI	RAATTY	3 cut(s)	1130, 1260, 1763
ArsI	GACNNNNNNTTYG	2 cut(s)	830, 862
AseI	ATTAAT	2 cut(s)	2016, 2484
AspLEI	GCGC	5 cut(s)	38, 749, 1778, 1783, 3580
AspS9I	GGNCC	8 cut(s)	140, 787, 1430, 1532, 1575, 1811, 2802, 2918
AsuC2I	CCSGG	1 cut(s)	525
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	6 cut(s)	140, 787, 1430, 1532, 1811, 2918
AxyI	CCTNAGG	1 cut(s)	2376
BalI	TGGCCA	1 cut(s)	456
BamHI	GGATCC	3 cut(s)	1673, 2524, 3358
BanI	GGYRCC	1 cut(s)	1124
BanII	GRGCYC	3 cut(s)	253, 1412, 3633
BbsI	GAAGAC	2 cut(s)	2213, 3124
Bbv12I	GWGCWC	2 cut(s)	413, 3633
BceAI	ACGGC	3 cut(s)	121, 206, 244
BcgI	CGANNNNNNTGC	4 cut(s)	2399, 2433, 3036, 3070
BciT130I	CCWGG	6 cut(s)	784, 1193, 1527, 2214, 2925, 3132
BciVI	GTATCC	1 cut(s)	1054
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	2 cut(s)	305, 1703
BfaI	CTAG	6 cut(s)	1089, 1224, 1494, 1572, 3063, 3078
BfmI	CTRYAG	4 cut(s)	315, 543, 1434, 3438
BfoI	RGCGCY	2 cut(s)	750, 1779
BfrI	CTTAAG	1 cut(s)	518
BfuI	GTATCC	1 cut(s)	1054
BglII	AGATCT	1 cut(s)	1393
BlpI	GCTNAGC	1 cut(s)	3686
BmcAI	AGTACT	2 cut(s)	502, 970
Bme1390I	CCNGG	7 cut(s)	525, 784, 1193, 1527, 2214, 2925, 3132
Bme18I	GGWCC	6 cut(s)	140, 787, 1430, 1532, 1811, 2918
BmeT110I	CYCGRG	1 cut(s)	176
BmgBI	CACGTC	2 cut(s)	262, 3122
BmgT120I	GGNCC	8 cut(s)	140, 787, 1430, 1532, 1575, 1811, 2802, 2918
BmrFI	CCNGG	7 cut(s)	525, 784, 1193, 1527, 2214, 2925, 3132
BmrI	ACTGGG	4 cut(s)	400, 1413, 2176, 3190
BmuI	ACTGGG	4 cut(s)	400, 1413, 2176, 3190
BpiI	GAAGAC	2 cut(s)	2213, 3124
BpmI	CTGGAG	2 cut(s)	1175, 1630
Bpu1102I	GCTNAGC	1 cut(s)	3686
BpuEI	CTTGAG	2 cut(s)	693, 2048
BpuMI	CCSGG	1 cut(s)	525
BsaAI	YACGTR	2 cut(s)	1415, 3194
BsaBI	GATNNNNATC	2 cut(s)	1200, 3357
BsaJI	CCNNGG	6 cut(s)	285, 783, 2284, 2805, 3131, 3278
BsaWI	WCCGGW	3 cut(s)	751, 946, 2275
BsaXI	ACNNNNNCTCC	2 cut(s)	1399, 1429
Bse21I	CCTNAGG	1 cut(s)	2376
Bse3DI	GCAATG	2 cut(s)	1915, 2100
Bse8I	GATNNNNATC	2 cut(s)	1200, 3357
BseAI	TCCGGA	2 cut(s)	946, 2275
BseBI	CCWGG	6 cut(s)	784, 1193, 1527, 2214, 2925, 3132
BseDI	CCNNGG	6 cut(s)	285, 783, 2284, 2805, 3131, 3278
BseJI	GATNNNNATC	2 cut(s)	1200, 3357
BseMI	GCAATG	2 cut(s)	1915, 2100
BseMII	CTCAG	8 cut(s)	147, 945, 1404, 2390, 2589, 3320, 3600, 3700
BseRI	GAGGAG	5 cut(s)	42, 373, 3295, 3518, 3623
BseYI	CCCAGC	1 cut(s)	2565
BsgI	GTGCAG	1 cut(s)	1593
Bsh1236I	CGCG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	940
BshNI	GGYRCC	1 cut(s)	1124
BsiEI	CGRYCG	1 cut(s)	940
BsiHKAI	GWGCWC	2 cut(s)	413, 3633
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	4 cut(s)	524, 752, 947, 2276
BslFI	GGGAC	5 cut(s)	405, 800, 1099, 1824, 2191
BsmAI	GTCTC	2 cut(s)	305, 1703
BsmFI	GGGAC	5 cut(s)	405, 800, 1099, 1824, 2191
BsmI	GAATGC	5 cut(s)	473, 714, 1552, 2460, 2673
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	4 cut(s)	253, 413, 1412, 3633
Bsp13I	TCCGGA	2 cut(s)	946, 2275
Bsp1720I	GCTNAGC	1 cut(s)	3686
BspCNI	CTCAG	8 cut(s)	148, 946, 1403, 2389, 2590, 3321, 3601, 3699
BspEI	TCCGGA	2 cut(s)	946, 2275
BspFNI	CGCG	1 cut(s)	36
BspMAI	CTGCAG	4 cut(s)	319, 547, 1438, 3442
BspQI	GCTCTTC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	1124
BspTI	CTTAAG	1 cut(s)	518
BsrBI	CCGCTC	1 cut(s)	117
BsrDI	GCAATG	2 cut(s)	1915, 2100
BssECI	CCNNGG	6 cut(s)	285, 783, 2284, 2805, 3131, 3278
BssNAI	GTATAC	1 cut(s)	1418
BssT1I	CCWWGG	3 cut(s)	285, 2284, 2805
Bst1107I	GTATAC	1 cut(s)	1418
Bst2UI	CCWGG	6 cut(s)	784, 1193, 1527, 2214, 2925, 3132
Bst4CI	ACNGT	8 cut(s)	451, 796, 1823, 2445, 2470, 2480, 2868, 3449
Bst6I	CTCTTC	5 cut(s)	28, 329, 1107, 1848, 2856
BstAFI	CTTAAG	1 cut(s)	518
BstAPI	GCANNNNNTGC	3 cut(s)	1385, 1616, 1696
BstBAI	YACGTR	2 cut(s)	1415, 3194
BstC8I	GCNNGC	5 cut(s)	122, 1688, 1692, 2010, 2946
BstENI	CCTNNNNNAGG	2 cut(s)	2898, 3254
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	2 cut(s)	750, 1779
BstHHI	GCGC	5 cut(s)	38, 749, 1778, 1783, 3580
BstMAI	GTCTC	2 cut(s)	305, 1703
BstMCI	CGRYCG	1 cut(s)	940
BstNI	CCWGG	6 cut(s)	784, 1193, 1527, 2214, 2925, 3132
BstNSI	RCATGY	3 cut(s)	668, 3112, 3578
BstSCI	CCNGG	7 cut(s)	523, 782, 1191, 1525, 2212, 2923, 3130
BstSFI	CTRYAG	4 cut(s)	315, 543, 1434, 3438
BstSNI	TACGTA	1 cut(s)	3194
BstUI	CGCG	1 cut(s)	36
BstV2I	GAAGAC	2 cut(s)	2213, 3124
BstX2I	RGATCY	6 cut(s)	487, 779, 1393, 1673, 2524, 3358
BstXI	CCANNNNNNTGG	1 cut(s)	2216
BstYI	RGATCY	6 cut(s)	487, 779, 1393, 1673, 2524, 3358
BstZ17I	GTATAC	1 cut(s)	1418
Bsu36I	CCTNAGG	1 cut(s)	2376
BsuI	GTATCC	1 cut(s)	1054
BtrI	CACGTC	2 cut(s)	262, 3122
BtsI	GCAGTG	4 cut(s)	1014, 1716, 3054, 3541
Cac8I	GCNNGC	5 cut(s)	122, 1688, 1692, 2010, 2946
CaiI	CAGNNNCTG	2 cut(s)	382, 863
CfoI	GCGC	5 cut(s)	38, 749, 1778, 1783, 3580
Cfr13I	GGNCC	8 cut(s)	140, 787, 1430, 1532, 1575, 1811, 2802, 2918
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	8 cut(s)	501, 942, 969, 2928, 3037, 3195, 3221, 3518
CviQI	GTAC	8 cut(s)	501, 942, 969, 2928, 3037, 3195, 3221, 3518
DraI	TTTAAA	3 cut(s)	1561, 3555, 3571
DrdI	GACNNNNNNGTC	1 cut(s)	1517
DseDI	GACNNNNNNGTC	1 cut(s)	1517
EaeI	YGGCCR	2 cut(s)	454, 1094
Eam1104I	CTCTTC	5 cut(s)	28, 329, 1107, 1848, 2856
EarI	CTCTTC	5 cut(s)	28, 329, 1107, 1848, 2856
EciI	GGCGGA	4 cut(s)	34, 257, 281, 3536
Ecl136II	GAGCTC	1 cut(s)	3631
Eco105I	TACGTA	1 cut(s)	3194
Eco130I	CCWWGG	3 cut(s)	285, 2284, 2805
Eco147I	AGGCCT	4 cut(s)	80, 1079, 2860, 3241
Eco24I	GRGCYC	3 cut(s)	253, 1412, 3633
Eco47I	GGWCC	6 cut(s)	140, 787, 1430, 1532, 1811, 2918
Eco47III	AGCGCT	1 cut(s)	748
Eco53kI	GAGCTC	1 cut(s)	3631
Eco57I	CTGAAG	7 cut(s)	353, 2625, 2651, 2729, 2837, 2849, 2985
Eco81I	CCTNAGG	1 cut(s)	2376
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	3631
EcoNI	CCTNNNNNAGG	2 cut(s)	2898, 3254
EcoO109I	RGGNCCY	2 cut(s)	787, 2802
EcoRI	GAATTC	1 cut(s)	1260
EcoRII	CCWGG	6 cut(s)	782, 1191, 1525, 2212, 2923, 3130
EcoT14I	CCWWGG	3 cut(s)	285, 2284, 2805
EcoT22I	ATGCAT	3 cut(s)	670, 2116, 2592
EcoT38I	GRGCYC	3 cut(s)	253, 1412, 3633
ErhI	CCWWGG	3 cut(s)	285, 2284, 2805
FalI	AAGNNNNNCTT	8 cut(s)	1827, 1859, 2376, 2408, 2992, 3024, 3481, 3513
FaqI	GGGAC	5 cut(s)	405, 800, 1099, 1824, 2191
FauI	CCCGC	1 cut(s)	429
FblI	GTMKAC	5 cut(s)	1417, 1509, 2389, 3190, 3614
FriOI	GRGCYC	3 cut(s)	253, 1412, 3633
FspAI	RTGCGCAY	1 cut(s)	3579
FspBI	CTAG	6 cut(s)	1089, 1224, 1494, 1572, 3063, 3078
FspI	TGCGCA	1 cut(s)	3579
GlaI	GCGC	5 cut(s)	37, 748, 1777, 1782, 3579
GsaI	CCCAGC	1 cut(s)	2569
GsuI	CTGGAG	2 cut(s)	1175, 1630
HaeII	RGCGCY	2 cut(s)	750, 1779
HapII	CCGG	4 cut(s)	524, 752, 947, 2276
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	5 cut(s)	38, 749, 1778, 1783, 3580
Hin6I	GCGC	5 cut(s)	36, 747, 1776, 1781, 3578
HinP1I	GCGC	5 cut(s)	36, 747, 1776, 1781, 3578
HincII	GTYRAC	8 cut(s)	226, 540, 1221, 1510, 3094, 3103, 3295, 3615
HindII	GTYRAC	8 cut(s)	226, 540, 1221, 1510, 3094, 3103, 3295, 3615
HindIII	AAGCTT	2 cut(s)	2006, 2744
HpaI	GTTAAC	2 cut(s)	226, 3295
HpaII	CCGG	4 cut(s)	524, 752, 947, 2276
Hpy99I	CGWCG	2 cut(s)	130, 638
HpyCH4III	ACNGT	8 cut(s)	451, 796, 1823, 2445, 2470, 2480, 2868, 3449
HpyCH4IV	ACGT	7 cut(s)	261, 1414, 3039, 3121, 3193, 3211, 3366
HpySE526I	ACGT	7 cut(s)	261, 1414, 3039, 3121, 3193, 3211, 3366
HspAI	GCGC	5 cut(s)	36, 747, 1776, 1781, 3578
KflI	GGGWCCC	1 cut(s)	787
Kpn2I	TCCGGA	2 cut(s)	946, 2275
KspAI	GTTAAC	2 cut(s)	226, 3295
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	9 cut(s)	114, 130, 754, 1407, 2177, 2304, 3079, 3313, 3636
MaeI	CTAG	6 cut(s)	1089, 1224, 1494, 1572, 3063, 3078
MaeII	ACGT	7 cut(s)	261, 1414, 3039, 3121, 3193, 3211, 3366
MbiI	CCGCTC	1 cut(s)	117
MflI	RGATCY	6 cut(s)	487, 779, 1393, 1673, 2524, 3358
MhlI	GDGCHC	4 cut(s)	253, 413, 1412, 3633
MlsI	TGGCCA	1 cut(s)	456
MluNI	TGGCCA	1 cut(s)	456
MlyI	GAGTC	3 cut(s)	167, 1505, 3620
MmeI	TCCRAC	3 cut(s)	123, 2166, 2394
Mox20I	TGGCCA	1 cut(s)	456
Mph1103I	ATGCAT	3 cut(s)	670, 2116, 2592
MroI	TCCGGA	2 cut(s)	946, 2275
MscI	TGGCCA	1 cut(s)	456
MslI	CAYNNNNRTG	5 cut(s)	956, 1488, 2214, 2993, 3579
Msp20I	TGGCCA	1 cut(s)	456
MspA1I	CMGCKG	3 cut(s)	206, 2371, 2884
MspCI	CTTAAG	1 cut(s)	518
MspI	CCGG	4 cut(s)	524, 752, 947, 2276
MspR9I	CCNGG	7 cut(s)	525, 784, 1193, 1527, 2214, 2925, 3132
MteI	GCGCNGCGC	1 cut(s)	1779
Mva1269I	GAATGC	5 cut(s)	473, 714, 1552, 2460, 2673
MvaI	CCWGG	6 cut(s)	784, 1193, 1527, 2214, 2925, 3132
MvnI	CGCG	1 cut(s)	36
NciI	CCSGG	1 cut(s)	525
NmuCI	GTSAC	8 cut(s)	846, 986, 1285, 1316, 2359, 2703, 2719, 3413
NsbI	TGCGCA	1 cut(s)	3579
NsiI	ATGCAT	3 cut(s)	670, 2116, 2592
NspI	RCATGY	3 cut(s)	668, 3112, 3578
PaeR7I	CTCGAG	1 cut(s)	176
PceI	AGGCCT	4 cut(s)	80, 1079, 2860, 3241
PciSI	GCTCTTC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	1515
PctI	GAATGC	5 cut(s)	473, 714, 1552, 2460, 2673
PfeI	GAWTC	9 cut(s)	152, 209, 373, 608, 1159, 1480, 1553, 2332, 2904
PfoI	TCCNGGA	1 cut(s)	1191
Ple19I	CGATCG	1 cut(s)	940
PleI	GAGTC	3 cut(s)	166, 1505, 3619
PpsI	GAGTC	3 cut(s)	166, 1505, 3619
Ppu21I	YACGTR	2 cut(s)	1415, 3194
PpuMI	RGGWCCY	1 cut(s)	787
PshBI	ATTAAT	2 cut(s)	2016, 2484
PsiI	TTATAA	1 cut(s)	2165
Psp124BI	GAGCTC	1 cut(s)	3633
Psp5II	RGGWCCY	1 cut(s)	787
Psp6I	CCWGG	6 cut(s)	782, 1191, 1525, 2212, 2923, 3130
PspFI	CCCAGC	1 cut(s)	2565
PspGI	CCWGG	6 cut(s)	782, 1191, 1525, 2212, 2923, 3130
PspPI	GGNCC	8 cut(s)	140, 787, 1430, 1532, 1575, 1811, 2802, 2918
PspPPI	RGGWCCY	1 cut(s)	787
PspXI	VCTCGAGB	1 cut(s)	176
PstI	CTGCAG	4 cut(s)	319, 547, 1438, 3442
PstNI	CAGNNNCTG	2 cut(s)	382, 863
PsuI	RGATCY	6 cut(s)	487, 779, 1393, 1673, 2524, 3358
PvuI	CGATCG	1 cut(s)	940
PvuII	CAGCTG	3 cut(s)	206, 2371, 2884
RsaI	GTAC	8 cut(s)	502, 943, 970, 2929, 3038, 3196, 3222, 3519
RsaNI	GTAC	8 cut(s)	501, 942, 969, 2928, 3037, 3195, 3221, 3518
RseI	CAYNNNNRTG	5 cut(s)	956, 1488, 2214, 2993, 3579
SacI	GAGCTC	1 cut(s)	3633
SalI	GTCGAC	2 cut(s)	1508, 3613
SapI	GCTCTTC	1 cut(s)	28
Sau96I	GGNCC	8 cut(s)	140, 787, 1430, 1532, 1575, 1811, 2802, 2918
SbfI	CCTGCAGG	1 cut(s)	1438
ScaI	AGTACT	2 cut(s)	502, 970
SchI	GAGTC	3 cut(s)	167, 1505, 3620
ScrFI	CCNGG	7 cut(s)	525, 784, 1193, 1527, 2214, 2925, 3132
SdaI	CCTGCAGG	1 cut(s)	1438
SduI	GDGCHC	4 cut(s)	253, 413, 1412, 3633
SfcI	CTRYAG	4 cut(s)	315, 543, 1434, 3438
Sfr274I	CTCGAG	1 cut(s)	176
SinI	GGWCC	6 cut(s)	140, 787, 1430, 1532, 1811, 2918
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	5 cut(s)	956, 1488, 2214, 2993, 3579
SmlI	CTYRAG	4 cut(s)	176, 518, 708, 2027
SmoI	CTYRAG	4 cut(s)	176, 518, 708, 2027
SnaBI	TACGTA	1 cut(s)	3194
Sse8387I	CCTGCAGG	1 cut(s)	1438
SseBI	AGGCCT	4 cut(s)	80, 1079, 2860, 3241
SspI	AATATT	2 cut(s)	2067, 2452
SspMI	CTAG	6 cut(s)	1089, 1224, 1494, 1572, 3063, 3078
SstI	GAGCTC	1 cut(s)	3633
StuI	AGGCCT	4 cut(s)	80, 1079, 2860, 3241
StyD4I	CCNGG	7 cut(s)	523, 782, 1191, 1525, 2212, 2923, 3130
StyI	CCWWGG	3 cut(s)	285, 2284, 2805
TaaI	ACNGT	8 cut(s)	451, 796, 1823, 2445, 2470, 2480, 2868, 3449
TaiI	ACGT	7 cut(s)	264, 1417, 3042, 3124, 3196, 3214, 3369
TaqI	TCGA	6 cut(s)	177, 371, 1509, 2262, 2550, 3614
TatI	WGTACW	2 cut(s)	500, 968
TauI	GCSGC	6 cut(s)	120, 242, 281, 284, 298, 1099
TfiI	GAWTC	9 cut(s)	152, 209, 373, 608, 1159, 1480, 1553, 2332, 2904
TseFI	GTSAC	8 cut(s)	846, 986, 1285, 1316, 2359, 2703, 2719, 3413
Tsp45I	GTSAC	8 cut(s)	846, 986, 1285, 1316, 2359, 2703, 2719, 3413
TspGWI	ACGGA	3 cut(s)	143, 484, 2506
Vha464I	CTTAAG	1 cut(s)	518
VpaK11BI	GGWCC	6 cut(s)	140, 787, 1430, 1532, 1811, 2918
VspI	ATTAAT	2 cut(s)	2016, 2484
XagI	CCTNNNNNAGG	2 cut(s)	2898, 3254
XapI	RAATTY	3 cut(s)	1130, 1260, 1763
XceI	RCATGY	3 cut(s)	668, 3112, 3578
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3352
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	5 cut(s)	1417, 1509, 2389, 3190, 3614
XspI	CTAG	6 cut(s)	1089, 1224, 1494, 1572, 3063, 3078
ZrmI	AGTACT	2 cut(s)	502, 970
Zsp2I	ATGCAT	3 cut(s)	670, 2116, 2592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.