Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006487

Physical Location & Seq

Genomic Coordinates Forward (+)

20655549 .. 20664739

Gene Structure 9191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25490.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3714 bp

ATGGTTGAGACCAGACGCAGTTCCTCTTCCAAACGCGCCCTATCCGCCTCTCCTCCCCCCAATCCCAAACGCTCAAAGGCGTCTGATGCTTCGTCGTCCAACAACGGCGTCCGGAGCGGGACTCCGGCGGAGCCTCTGGGTCCGATAAAGGAATCTGAGTCTCAATCGCCGGACCTTGAGCTGCGATCCCCTGATCCGCAGACAGCTGACTCCTTGAAGGCCGTTAACGGCTCTGATGCGGCGGAGAGGGCCCCTGATGACGTGGCGGAAGCAGAAGCCGCCGCCGCCTTGGAGTCGCCGAAGCCTTTGAGTGACACTGCAGTGCGTTCTGGGTTGAAGAGGAATAAGAAAGTTCCGAAGAGGAGTGCGAAATCGAATCAGAAACTGGCGTGGGGACAGCTTCTTTCCCAGTGCTCTAAGAACCCGCATCAGTTTCTTTGTGATACTTTCACTGTTGGTCAAGGTCGTGAGTGCAATTTATGTCTTAAAGATCCATCCGTTAGTACTACACTCTGTAAACTTAAGCCGGGTGAAGGTTCGTCAACTGCAGAAATGGAAATTACAGGGGCGAAGGGTTATGTTCTGGTCAATGGAAAGATTTATCAACAAGATTCGAAGGTTATTCTAATTGGAGGCGATGAGGTTGTTTTCGGTTCATCCGGGAAACATGCATATATTTTCATGCAGCTGACTAATGGTAACATAGCTAATCAAGGCATTTCTTCAATTAGCATATTAGAAACCCAGAGCGCTCCAGTTAATGGATTACATATTGAGGCAAGATCAAGGGACCCCTCGGTTGATGGGGCATCTATATTAGCATCTATGTCAAATGTGCCAAATAACTTATCACTACTTCCAGCATCTGCTAAAGCTGGTGGTGATCTGCAACAAGATGCCGATATACCTTCTACTCCTTCTGGTTGTGGAGGGTCAGATGATCGTACTCCAGACACTGAGATGAAGGATAGTACTAACATCAATGATGGTGACAAAGATATTGTTTCATACCCCGACACTGCCAACGAAAACCCCAATCTCGATAGCCTTGCATTGGACATGGATACTGAAACGGGAAAGTCCTCTGGGGCTAGGTGGCCTCTCCTCCGAATGTTGGGTTCTGGTGCCAAATTTGACTTCAGTGGCAGCATTTCAAAGATTCTTAATGAACCGAGAGAAATTAGAGAACTCCTTCAGGATTTTGATCCTCCAATTTTGCTGTCAACTAGACGACAAGCATTTAGAGATAAACTGCAACAAGGAATTCTAAATCCTAATGATATTGAAGTCACATTTGAAAGTTTCCCATACTACCTAAGTGACACAACCAAAAATGTTCTTATCGCTTCCATCCACATTCATTTGAAGTGTAATAAGTTTGCGAAGTATGCCTCAGATCTCCCAACTGGAAGCCCACGGATACTATTATCTGGTCCTGCAGGATCGGAGATATATCAGGAAACTTTGGCAAAGGCACTTGCAAAACATTTTGGTGCTAAACTGCTAATTGTCGAATCTCTTGTTATGCCTGGTGGACAAGCATCCCAGAATACTGAGTCTGCTAAAGAAGCAGCTAGGGCTGAAAGAGTTAACATGTTCAGTAAACGAGCTGCACATGCTGCTGGATTAAGGCATAAGAAACCAACCTCCAGTGTTGACGCTGAAATGACAGGCGGATCCACCCTAAGCTCGCAAGCTCTGCCAAAGCAGGAAACATCCACTGCATCTTCCAAAGGCATTACATTTAAACAAGGTGATAAGGTGAAATTTATCGGTACTGCTGGGCTTCCTTATGCAGTGAATCCTATGCCTAATCTAAGGGGACCACAATATGGGTACAAAGGCAAAGTTGTTCTTCCTTTCGAAGAGAATGGGTCGTCTAAAATTGGTGTTAGATTTGAGAAAGCGATACCAGATGGCAATGATCTTGGTGGCCATTGCGAAGAAGATCGTGGTTTTTTCTGTTCAGCTAATCATTTAATGCGCATGGATGTTTCGGGAGGTGATGATATTGACAAGCTTGCCATTAATGAGCTTCTTGAGGTTGCATCAAATGAGAGTAAAAGTATGCCTCTAATATTGTTCATGAAAGATGTGGAGAAGGCAATGGTAGGTAATTCAGATGCATTTATTCACTTCAAGAGTAAGCTTGAAAGTTTGCCAGAGAATGTCGTTATAATTGGCTCCCATACTCAGTTGGACAATCGTAAGGAAAAGTCCCACCCCGGTGGTCTTCTGTTTACAAAGTTCGGTTTCAGCCAAACAGCTTTGCTTGATCTTGCTTTTCCGGATAACCTTGGTAGACTGCAAGATAGGAGCAAAGAAACCCCTAAATCATTGAAGAATCTTACTCGGATTTTTCCGAACAAGGTGACAATACAGCTGCCTCAGGATGAAGCTTTACTTTCAGACTGGAAGCAGCAGTTAGATCGTGATGTTGAAACTCTGAAAGCAGTGTCAAATATTGTTAGCATTCGTGCAGTTCTTAACCGAATTAATCTGGATTGCCCCGACCTTGAAAGTCTGTGCGTTAAGGATCCTACCCTTACAACTGAAAGTGTTGAGAAAGTAATAGGCTGGGCTTTGAGTTATCACTCTATGCATTGTTCTGAGGCTGAAGTTAAAGACGGAAAACTTGTCATTTGTACTGAAAGTCTTAAATATGGACTGAACATCCTACAGGGCATTCAGAGTGAGAACAAAAGCACAAAAAAGTCCCTAAAGGATGTGGTCACTGGAAATGAGTTTGAGAAGAAGCTTCTTGCTGATGTCATTCCACCAAGCGACATTGGTGTCACTTTTGATGACATTGGGGCCTTGGAAAATGTGAAGGACACACTGAAGGAGTTGGTGATGCTTCCGCTTCAGAGGCCTGAACTGTTTAGCAAAGGACAGCTGACTAAGCCTTGCAAAGGAATCTTGTTGTTTGGTCCTCCTGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCAACTGAAGCTGGTGCAAACTTTATTAACATATCAATGTCAAGTATTACTTCAAAGTGGTTTGGGGAAGGAGAGAAGTATGTTAAAGCAGTGTTCTCTTTAGCTAGTAAAATTGCTCCTAGTGTTGTATTTGTTGACGAGGTTGACAGCATGTTAGGAAGACGTGAGAATCCTGGGGAACATGAGGCTATGCGTAAAATGAAAAATGAGTTCATGGTGAATTGGGATGGTCTACGTACAAAGGATAAAGAACGTGTATTGGTACTCGCTGCTACTAACAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTTCCAAGGAGGTTGATGGTTAACTTGCCAGATGCTCCAAACAGAGAAAAGATACTGAGAGTTATATTAGCCAAAGAAGATTTAGAACCTGACGTTGATTTGGAAGGTGTTGCGAGCATGACGGATGGGTATTCTGGAAGTGACCTAAAGAACCTTTGTGTTACCGCAGCTCACCGTCCCATCAGGGAAATCTTAGAAAAAGAAAAGAAGGAGCGAAGTTTTGCTTTGGAGGAGAACAGACCTGTACCGTCCTTGTATTGCAGTGCTGACATTCGCCCTTTAAAGATGGAGGATTTTAAACATGCGCATGAACAGGTCTGTGCAAGTGTGTCATCTGAGTCGACAAATATGAATGAGCTTCTCCAATGGAATGACTTGTACGGAGAAGGTGGATCAAGAAAGAAGAAAGCGCTGAGCTATTTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002090 GO:0002092 GO:0003008 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007610 GO:0007611 GO:0007612 GO:0007613 GO:0008150 GO:0009893 GO:0010604 GO:0010646 GO:0010648 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0023051 GO:0023057 GO:0030100 GO:0031323 GO:0031325 GO:0032501 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044456 GO:0044459 GO:0044464 GO:0045202 GO:0045211 GO:0045807 GO:0048259 GO:0048260 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050804 GO:0050805 GO:0050877 GO:0050890 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051966 GO:0051967 GO:0060255 GO:0060627 GO:0065007 GO:0071944 GO:0097060 GO:0098590 GO:0098794 GO:0099177

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FHA

Protein Analysis

1238

Amino Acids

134.67

Weight (kDa)

6.27

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7751	PF24933	707 - 773	2.5e-20	Domain of unknown function (DUF7751)
AAA	PF00004	852 - 982	7.6e-38	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	1005 - 1041	2.7e-13	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02890 AT1G02890 AT4G02480
fragaria_vesca	FvH4_2g25490 FvH4_2g25490 FvH4_2g25490
malus_domestica	MD03G1285800.v1.1 MD11G1305200.v1.1 MD11G1305300.v1.1 MD11G1305400.v1.1
prunus_persica	Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1
pyrus_communis	pycom03g22650 pycom11g26700 pycom11g26720
rosa_chinensis	RchiOBHm_Chr6g0293701
rosa_laevigata	RLG00000011931
rosa_roxburghii	Rroxscaffold_7G00173960
rosa_rugosa	Rorug06G0237500
rosa_samantha	Rh6AG350200 Rh6BG357700 Rh6CG364500 Rh6DG351400
rosa_wichuraiana	Rw6G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2177
AasI	GACNNNNNNGTC	1 cut(s)	2792
Acc16I	TGCGCA	2 cut(s)	1985, 3591
AccB1I	GGYRCC	1 cut(s)	1124
AccB7I	CCANNNNNTGG	2 cut(s)	761, 1832
AccBSI	CCGCTC	1 cut(s)	117
AccI	GTMKAC	3 cut(s)	2302, 3202, 3626
AccII	CGCG	1 cut(s)	36
AccIII	TCCGGA	2 cut(s)	111, 2287
AcoI	YGGCCR	1 cut(s)	1933
AcsI	RAATTY	3 cut(s)	1130, 1263, 1766
AcuI	CTGAAG	6 cut(s)	1123, 1178, 2637, 2849, 2861, 2997
AcyI	GRCGYC	2 cut(s)	80, 108
AfeI	AGCGCT	2 cut(s)	751, 3696
AfiI	CCNNNNNNNGG	8 cut(s)	533, 761, 1054, 1114, 1832, 2912, 2942, 3268
AflII	CTTAAG	1 cut(s)	521
AflIII	ACRYGT	2 cut(s)	1593, 3223
AjiI	CACGTC	2 cut(s)	262, 3134
AjnI	CCWGG	3 cut(s)	1528, 2935, 3142
AjuI	GAANNNNNNNTTGG	2 cut(s)	1121, 1153
AleI	CACNNNNGTG	2 cut(s)	320, 2226
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	2 cut(s)	2, 165
AlwNI	CAGNNNCTG	3 cut(s)	385, 866, 956
Aor13HI	TCCGGA	2 cut(s)	111, 2287
Aor51HI	AGCGCT	2 cut(s)	751, 3696
AoxI	GGCC	7 cut(s)	219, 249, 1097, 1933, 2814, 2870, 3251
ApaI	GGGCCC	1 cut(s)	253
ApoI	RAATTY	3 cut(s)	1130, 1263, 1766
AseI	ATTAAT	2 cut(s)	2028, 2496
Asp700I	GAANNNNTTC	1 cut(s)	1191
AspLEI	GCGC	5 cut(s)	38, 752, 1986, 3592, 3697
AspS9I	GGNCC	9 cut(s)	140, 172, 249, 250, 790, 1433, 1823, 2814, 2930
AsuC2I	CCSGG	3 cut(s)	528, 661, 2226
AsuII	TTCGAA	2 cut(s)	614, 1863
AvaII	GGWCC	6 cut(s)	140, 172, 790, 1433, 1823, 2930
AxyI	CCTNAGG	1 cut(s)	2388
BaeGI	GKGCMC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	1935
BamHI	GGATCC	2 cut(s)	1676, 2536
BanI	GGYRCC	1 cut(s)	1124
BanII	GRGCYC	1 cut(s)	253
BbsI	GAAGAC	2 cut(s)	2225, 3136
Bbv12I	GWGCWC	1 cut(s)	416
BceAI	ACGGC	3 cut(s)	121, 206, 244
BcgI	CGANNNNNNTGC	4 cut(s)	1031, 1065, 2411, 2445
BciT130I	CCWGG	3 cut(s)	1530, 2937, 3144
BciVI	GTATCC	2 cut(s)	1057, 1413
BcnI	CCSGG	3 cut(s)	528, 661, 2226
BcoDI	GTCTC	2 cut(s)	2, 165
BfaI	CTAG	5 cut(s)	1092, 1227, 1575, 3075, 3090
BfmI	CTRYAG	4 cut(s)	318, 546, 1437, 2678
BfoI	RGCGCY	2 cut(s)	753, 3698
BfrI	CTTAAG	1 cut(s)	521
BfuI	GTATCC	2 cut(s)	1057, 1413
BglII	AGATCT	1 cut(s)	1396
BlpI	GCTNAGC	1 cut(s)	3698
BmcAI	AGTACT	2 cut(s)	505, 973
Bme1390I	CCNGG	6 cut(s)	528, 661, 1530, 2226, 2937, 3144
Bme18I	GGWCC	6 cut(s)	140, 172, 790, 1433, 1823, 2930
BmgBI	CACGTC	2 cut(s)	262, 3134
BmgT120I	GGNCC	9 cut(s)	140, 172, 249, 250, 790, 1433, 1823, 2814, 2930
BmrFI	CCNGG	6 cut(s)	528, 661, 1530, 2226, 2937, 3144
BmrI	ACTGGG	2 cut(s)	403, 2952
BmuI	ACTGGG	2 cut(s)	403, 2952
BpiI	GAAGAC	2 cut(s)	2225, 3136
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
BpmI	CTGGAG	3 cut(s)	738, 933, 1633
Bpu10I	CCTNAGC	1 cut(s)	1685
Bpu1102I	GCTNAGC	1 cut(s)	3698
Bpu14I	TTCGAA	2 cut(s)	614, 1863
BpuEI	CTTGAG	2 cut(s)	197, 2060
BpuMI	CCSGG	3 cut(s)	528, 661, 2226
BsaAI	YACGTR	1 cut(s)	3206
BsaBI	GATNNNNATC	1 cut(s)	1203
BsaHI	GRCGYC	2 cut(s)	80, 108
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	8 cut(s)	288, 795, 1415, 2224, 2296, 2817, 3143, 3290
BsaWI	WCCGGW	2 cut(s)	111, 2287
Bsc4I	CCNNNNNNNGG	8 cut(s)	533, 761, 1054, 1114, 1832, 2912, 2942, 3268
Bse1I	ACTGG	8 cut(s)	390, 409, 755, 1411, 1650, 2417, 2740, 2947
Bse21I	CCTNAGG	1 cut(s)	2388
Bse3DI	GCAATG	3 cut(s)	1927, 1936, 2112
Bse8I	GATNNNNATC	1 cut(s)	1203
BseAI	TCCGGA	2 cut(s)	111, 2287
BseBI	CCWGG	3 cut(s)	1530, 2937, 3144
BseDI	CCNNGG	8 cut(s)	288, 795, 1415, 2224, 2296, 2817, 3143, 3290
BseJI	GATNNNNATC	1 cut(s)	1203
BseLI	CCNNNNNNNGG	8 cut(s)	533, 761, 1054, 1114, 1832, 2912, 2942, 3268
BseMI	GCAATG	3 cut(s)	1927, 1936, 2112
BseNI	ACTGG	8 cut(s)	390, 409, 755, 1411, 1650, 2417, 2740, 2947
BseRI	GAGGAG	4 cut(s)	42, 376, 1094, 3530
BseSI	GKGCMC	1 cut(s)	253
BseYI	CCCAGC	2 cut(s)	1781, 2577
BsgI	GTGCAG	2 cut(s)	1596, 2499
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	7 cut(s)	221, 251, 1099, 1935, 2816, 2872, 3253
BshNI	GGYRCC	1 cut(s)	1124
BsiHKAI	GWGCWC	1 cut(s)	416
BsiSI	CCGG	7 cut(s)	112, 125, 170, 527, 660, 2226, 2288
BslFI	GGGAC	7 cut(s)	133, 408, 803, 1836, 2203, 2701, 3447
BslI	CCNNNNNNNGG	8 cut(s)	533, 761, 1054, 1114, 1832, 2912, 2942, 3268
BsmAI	GTCTC	2 cut(s)	2, 165
BsmFI	GGGAC	7 cut(s)	133, 408, 803, 1836, 2203, 2701, 3447
BsmI	GAATGC	2 cut(s)	2472, 2685
BsnI	GGCC	7 cut(s)	221, 251, 1099, 1935, 2816, 2872, 3253
Bso31I	GGTCTC	1 cut(s)	2
Bsp119I	TTCGAA	2 cut(s)	614, 1863
Bsp120I	GGGCCC	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	253, 416
Bsp13I	TCCGGA	2 cut(s)	111, 2287
Bsp1720I	GCTNAGC	1 cut(s)	3698
BspANI	GGCC	7 cut(s)	221, 251, 1099, 1935, 2816, 2872, 3253
BspEI	TCCGGA	2 cut(s)	111, 2287
BspFNI	CGCG	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	2085
BspMAI	CTGCAG	3 cut(s)	322, 550, 1441
BspT104I	TTCGAA	2 cut(s)	614, 1863
BspT107I	GGYRCC	1 cut(s)	1124
BspTI	CTTAAG	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	2
BsrBI	CCGCTC	1 cut(s)	117
BsrDI	GCAATG	3 cut(s)	1927, 1936, 2112
BsrI	ACTGG	8 cut(s)	390, 409, 755, 1411, 1650, 2417, 2740, 2947
BssECI	CCNNGG	8 cut(s)	288, 795, 1415, 2224, 2296, 2817, 3143, 3290
BssNI	GRCGYC	2 cut(s)	80, 108
BssT1I	CCWWGG	4 cut(s)	288, 2296, 2817, 3290
Bst2UI	CCWGG	3 cut(s)	1530, 2937, 3144
Bst4CI	ACNGT	4 cut(s)	454, 2880, 3461, 3534
Bst6I	CTCTTC	4 cut(s)	31, 332, 353, 1860
BstACI	GRCGYC	2 cut(s)	80, 108
BstAFI	CTTAAG	1 cut(s)	521
BstAPI	GCANNNNNTGC	2 cut(s)	1619, 1699
BstBAI	YACGTR	1 cut(s)	3206
BstBI	TTCGAA	2 cut(s)	614, 1863
BstC8I	GCNNGC	5 cut(s)	1691, 1695, 2022, 2958, 3400
BstDSI	CCRYGG	1 cut(s)	1415
BstENI	CCTNNNNNAGG	2 cut(s)	2910, 3266
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	2 cut(s)	753, 3698
BstHHI	GCGC	5 cut(s)	38, 752, 1986, 3592, 3697
BstMAI	GTCTC	2 cut(s)	2, 165
BstNI	CCWGG	3 cut(s)	1530, 2937, 3144
BstNSI	RCATGY	5 cut(s)	671, 1597, 1619, 3124, 3590
BstSCI	CCNGG	6 cut(s)	526, 659, 1528, 2224, 2935, 3142
BstSFI	CTRYAG	4 cut(s)	318, 546, 1437, 2678
BstSLI	GKGCMC	1 cut(s)	253
BstSNI	TACGTA	1 cut(s)	3206
BstUI	CGCG	1 cut(s)	36
BstV2I	GAAGAC	2 cut(s)	2225, 3136
BstX2I	RGATCY	4 cut(s)	490, 1396, 1676, 2536
BstXI	CCANNNNNNTGG	1 cut(s)	2228
BstYI	RGATCY	4 cut(s)	490, 1396, 1676, 2536
Bsu36I	CCTNAGG	1 cut(s)	2388
BsuI	GTATCC	2 cut(s)	1057, 1413
BsuRI	GGCC	7 cut(s)	221, 251, 1099, 1935, 2816, 2872, 3253
BtgI	CCRYGG	1 cut(s)	1415
BtgZI	GCGATG	1 cut(s)	651
BtrI	CACGTC	2 cut(s)	262, 3134
BtsI	GCAGTG	8 cut(s)	315, 327, 1017, 1719, 1803, 2460, 3066, 3553
Cac8I	GCNNGC	5 cut(s)	1691, 1695, 2022, 2958, 3400
CaiI	CAGNNNCTG	3 cut(s)	385, 866, 956
CciI	TCATGA	1 cut(s)	2085
CfoI	GCGC	5 cut(s)	38, 752, 1986, 3592, 3697
Cfr13I	GGNCC	9 cut(s)	140, 172, 249, 250, 790, 1433, 1823, 2814, 2930
CseI	GACGC	4 cut(s)	24, 69, 97, 1667
DraI	TTTAAA	3 cut(s)	1747, 3567, 3583
DrdI	GACNNNNNNGTC	1 cut(s)	2792
DseDI	GACNNNNNNGTC	1 cut(s)	2792
EaeI	YGGCCR	1 cut(s)	1933
Eam1104I	CTCTTC	4 cut(s)	31, 332, 353, 1860
EarI	CTCTTC	4 cut(s)	31, 332, 353, 1860
EciI	GGCGGA	5 cut(s)	34, 143, 257, 281, 1689
Eco105I	TACGTA	1 cut(s)	3206
Eco130I	CCWWGG	4 cut(s)	288, 2296, 2817, 3290
Eco147I	AGGCCT	2 cut(s)	2872, 3253
Eco24I	GRGCYC	1 cut(s)	253
Eco31I	GGTCTC	1 cut(s)	2
Eco47I	GGWCC	6 cut(s)	140, 172, 790, 1433, 1823, 2930
Eco47III	AGCGCT	2 cut(s)	751, 3696
Eco57I	CTGAAG	6 cut(s)	1123, 1178, 2637, 2849, 2861, 2997
Eco81I	CCTNAGG	1 cut(s)	2388
EcoNI	CCTNNNNNAGG	2 cut(s)	2910, 3266
EcoO109I	RGGNCCY	4 cut(s)	249, 250, 790, 2814
EcoRI	GAATTC	1 cut(s)	1263
EcoRII	CCWGG	3 cut(s)	1528, 2935, 3142
EcoT14I	CCWWGG	4 cut(s)	288, 2296, 2817, 3290
EcoT22I	ATGCAT	3 cut(s)	673, 2128, 2604
EcoT38I	GRGCYC	1 cut(s)	253
ErhI	CCWWGG	4 cut(s)	288, 2296, 2817, 3290
FalI	AAGNNNNNCTT	8 cut(s)	1839, 1871, 2388, 2420, 3004, 3036, 3493, 3525
FaqI	GGGAC	7 cut(s)	133, 408, 803, 1836, 2203, 2701, 3447
FauI	CCCGC	2 cut(s)	110, 432
FblI	GTMKAC	3 cut(s)	2302, 3202, 3626
FriOI	GRGCYC	1 cut(s)	253
FspAI	RTGCGCAY	2 cut(s)	1985, 3591
FspBI	CTAG	5 cut(s)	1092, 1227, 1575, 3075, 3090
FspI	TGCGCA	2 cut(s)	1985, 3591
GlaI	GCGC	5 cut(s)	37, 751, 1985, 3591, 3696
GsaI	CCCAGC	2 cut(s)	1785, 2581
GsuI	CTGGAG	3 cut(s)	738, 933, 1633
HaeII	RGCGCY	2 cut(s)	753, 3698
HaeIII	GGCC	7 cut(s)	221, 251, 1099, 1935, 2816, 2872, 3253
HapII	CCGG	7 cut(s)	112, 125, 170, 527, 660, 2226, 2288
HgaI	GACGC	4 cut(s)	24, 69, 97, 1667
HhaI	GCGC	5 cut(s)	38, 752, 1986, 3592, 3697
Hin1I	GRCGYC	2 cut(s)	80, 108
Hin6I	GCGC	5 cut(s)	36, 750, 1984, 3590, 3695
HinP1I	GCGC	5 cut(s)	36, 750, 1984, 3590, 3695
HincII	GTYRAC	9 cut(s)	226, 543, 1224, 1591, 1657, 3106, 3115, 3307, 3627
HindII	GTYRAC	9 cut(s)	226, 543, 1224, 1591, 1657, 3106, 3115, 3307, 3627
HindIII	AAGCTT	4 cut(s)	2018, 2147, 2397, 2756
HpaI	GTTAAC	3 cut(s)	226, 1591, 3307
HpaII	CCGG	7 cut(s)	112, 125, 170, 527, 660, 2226, 2288
Hpy99I	CGWCG	1 cut(s)	97
HpyCH4III	ACNGT	4 cut(s)	454, 2880, 3461, 3534
HpyCH4IV	ACGT	5 cut(s)	261, 3133, 3205, 3223, 3378
HpySE526I	ACGT	5 cut(s)	261, 3133, 3205, 3223, 3378
Hsp92I	GRCGYC	2 cut(s)	80, 108
HspAI	GCGC	5 cut(s)	36, 750, 1984, 3590, 3695
KflI	GGGWCCC	1 cut(s)	790
Kpn2I	TCCGGA	2 cut(s)	111, 2287
KspAI	GTTAAC	3 cut(s)	226, 1591, 3307
LmnI	GCTCC	8 cut(s)	114, 130, 757, 2189, 2316, 3091, 3325, 3496
MaeI	CTAG	5 cut(s)	1092, 1227, 1575, 3075, 3090
MaeII	ACGT	5 cut(s)	261, 3133, 3205, 3223, 3378
MbiI	CCGCTC	1 cut(s)	117
MflI	RGATCY	4 cut(s)	490, 1396, 1676, 2536
MhlI	GDGCHC	2 cut(s)	253, 416
MlsI	TGGCCA	1 cut(s)	1935
MluNI	TGGCCA	1 cut(s)	1935
MlyI	GAGTC	6 cut(s)	115, 167, 203, 302, 1565, 3632
MmeI	TCCRAC	2 cut(s)	123, 2178
Mox20I	TGGCCA	1 cut(s)	1935
Mph1103I	ATGCAT	3 cut(s)	673, 2128, 2604
MroI	TCCGGA	2 cut(s)	111, 2287
MroXI	GAANNNNTTC	1 cut(s)	1191
MscI	TGGCCA	1 cut(s)	1935
MslI	CAYNNNNRTG	6 cut(s)	320, 959, 1491, 2226, 3005, 3591
Msp20I	TGGCCA	1 cut(s)	1935
MspA1I	CMGCKG	4 cut(s)	206, 688, 2383, 2896
MspCI	CTTAAG	1 cut(s)	521
MspI	CCGG	7 cut(s)	112, 125, 170, 527, 660, 2226, 2288
MspR9I	CCNGG	6 cut(s)	528, 661, 1530, 2226, 2937, 3144
Mva1269I	GAATGC	2 cut(s)	2472, 2685
MvaI	CCWGG	3 cut(s)	1530, 2937, 3144
MvnI	CGCG	1 cut(s)	36
NciI	CCSGG	3 cut(s)	528, 661, 2226
NmuCI	GTSAC	8 cut(s)	311, 989, 1288, 1319, 2371, 2731, 2794, 3425
NsbI	TGCGCA	2 cut(s)	1985, 3591
NsiI	ATGCAT	3 cut(s)	673, 2128, 2604
NspI	RCATGY	5 cut(s)	671, 1597, 1619, 3124, 3590
NspV	TTCGAA	2 cut(s)	614, 1863
OliI	CACNNNNGTG	2 cut(s)	320, 2226
PagI	TCATGA	1 cut(s)	2085
PceI	AGGCCT	2 cut(s)	2872, 3253
PciI	ACATGT	1 cut(s)	1593
PctI	GAATGC	2 cut(s)	2472, 2685
PdmI	GAANNNNTTC	1 cut(s)	1191
PfeI	GAWTC	9 cut(s)	152, 376, 611, 1159, 1514, 1801, 2344, 2916, 3139
PflMI	CCANNNNNTGG	2 cut(s)	761, 1832
PfoI	TCCNGGA	1 cut(s)	659
PleI	GAGTC	6 cut(s)	115, 166, 203, 301, 1564, 3631
PpsI	GAGTC	6 cut(s)	115, 166, 203, 301, 1564, 3631
Ppu21I	YACGTR	1 cut(s)	3206
PpuMI	RGGWCCY	1 cut(s)	790
PscI	ACATGT	1 cut(s)	1593
PshBI	ATTAAT	2 cut(s)	2028, 2496
PsiI	TTATAA	1 cut(s)	2177
Psp5II	RGGWCCY	1 cut(s)	790
Psp6I	CCWGG	3 cut(s)	1528, 2935, 3142
PspFI	CCCAGC	2 cut(s)	1781, 2577
PspGI	CCWGG	3 cut(s)	1528, 2935, 3142
PspOMI	GGGCCC	1 cut(s)	249
PspPI	GGNCC	9 cut(s)	140, 172, 249, 250, 790, 1433, 1823, 2814, 2930
PspPPI	RGGWCCY	1 cut(s)	790
PstI	CTGCAG	3 cut(s)	322, 550, 1441
PstNI	CAGNNNCTG	3 cut(s)	385, 866, 956
PsuI	RGATCY	4 cut(s)	490, 1396, 1676, 2536
PvuII	CAGCTG	4 cut(s)	206, 688, 2383, 2896
RseI	CAYNNNNRTG	6 cut(s)	320, 959, 1491, 2226, 3005, 3591
SalI	GTCGAC	1 cut(s)	3625
Sau96I	GGNCC	9 cut(s)	140, 172, 249, 250, 790, 1433, 1823, 2814, 2930
SbfI	CCTGCAGG	1 cut(s)	1441
ScaI	AGTACT	2 cut(s)	505, 973
SchI	GAGTC	6 cut(s)	115, 167, 203, 302, 1565, 3632
ScrFI	CCNGG	6 cut(s)	528, 661, 1530, 2226, 2937, 3144
SdaI	CCTGCAGG	1 cut(s)	1441
SduI	GDGCHC	2 cut(s)	253, 416
SfcI	CTRYAG	4 cut(s)	318, 546, 1437, 2678
SfuI	TTCGAA	2 cut(s)	614, 1863
SinI	GGWCC	6 cut(s)	140, 172, 790, 1433, 1823, 2930
SmiMI	CAYNNNNRTG	6 cut(s)	320, 959, 1491, 2226, 3005, 3591
SmlI	CTYRAG	3 cut(s)	176, 521, 2039
SmoI	CTYRAG	3 cut(s)	176, 521, 2039
SnaBI	TACGTA	1 cut(s)	3206
Sse8387I	CCTGCAGG	1 cut(s)	1441
SseBI	AGGCCT	2 cut(s)	2872, 3253
SspI	AATATT	2 cut(s)	2079, 2464
SspMI	CTAG	5 cut(s)	1092, 1227, 1575, 3075, 3090
StuI	AGGCCT	2 cut(s)	2872, 3253
StyD4I	CCNGG	6 cut(s)	526, 659, 1528, 2224, 2935, 3142
StyI	CCWWGG	4 cut(s)	288, 2296, 2817, 3290
TaaI	ACNGT	4 cut(s)	454, 2880, 3461, 3534
TaiI	ACGT	5 cut(s)	264, 3136, 3208, 3226, 3381
TaqI	TCGA	6 cut(s)	374, 614, 1041, 1512, 1863, 3626
TatI	WGTACW	3 cut(s)	503, 971, 2645
TauI	GCSGC	4 cut(s)	242, 281, 284, 287
TfiI	GAWTC	9 cut(s)	152, 376, 611, 1159, 1514, 1801, 2344, 2916, 3139
TseFI	GTSAC	8 cut(s)	311, 989, 1288, 1319, 2371, 2731, 2794, 3425
Tsp45I	GTSAC	8 cut(s)	311, 989, 1288, 1319, 2371, 2731, 2794, 3425
TspGWI	ACGGA	5 cut(s)	487, 1432, 2643, 3422, 3681
Van91I	CCANNNNNTGG	2 cut(s)	761, 1832
Vha464I	CTTAAG	1 cut(s)	521
VpaK11BI	GGWCC	6 cut(s)	140, 172, 790, 1433, 1823, 2930
VspI	ATTAAT	2 cut(s)	2028, 2496
XagI	CCTNNNNNAGG	2 cut(s)	2910, 3266
XapI	RAATTY	3 cut(s)	1130, 1263, 1766
XceI	RCATGY	5 cut(s)	671, 1597, 1619, 3124, 3590
XmiI	GTMKAC	3 cut(s)	2302, 3202, 3626
XmnI	GAANNNNTTC	1 cut(s)	1191
XspI	CTAG	5 cut(s)	1092, 1227, 1575, 3075, 3090
ZrmI	AGTACT	2 cut(s)	505, 973
Zsp2I	ATGCAT	3 cut(s)	673, 2128, 2604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.