Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004317

Physical Location & Seq

Genomic Coordinates Forward (+)

38014810 .. 38017980

Gene Structure 3171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0237500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCCGCCGAAGAAGATGGGCGTGAACAACAAGGCGGAAGCCGCTAGGGCTCGGCGGAGCGCCACCGAAGCCGAGCGCAAGGAGAGCGAGGCTCGCCACAAGGAGGAGCAGTACTGGCGCGAAGCCGAGGGCAGCAAATCACGCGCCGCCAAGAAGCGCGAGGAGGAGGCCGAGAAGCGAGCCGAGGCCGCCGCTCGCAAGGCCGAGGCGCGCCGATTGGCCGAGCTGGAGGAGAAGGAGCTCGAGAAGATGGCCAAGAAGCCTGACAAGAAGGTCAGCCGCGTCGCGATCCCGGTCCCGAAGGTGACGGAGGCCGAGCTGAGGAAGCGCCGGGAGGAGGAGGCGGCGGCGATGGAGAAGAAGTCGGAGGAGTCGAAGAAGAAGCAGACGCGCACGGCGGCGGAGGAGGAGTACGAGAGAATGGTGCTTGTGTCGAACACGAACCGTGATGATTCGACTATTGAGGCGAGGTCGGTGGAGGAAGCGATTGCTCAGATGTCGGTGGCGGAGCCCTTGCCGGTGGATCGCCACCCCGAGAGGAGGCTCAAGGCTTCGTTTAAGGCATTTGAAGAGGCTGAGCTTCCCAGGTTGAAGGAGGAGAAACCAGGACTTACTCACAATCAATACAAGGACATGATATGGAAGCTATGGAAGAAATCTCCCGATAATCCTCTAAATCAGGTTGCTGCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004788 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009987 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0042357 GO:0042723 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

TPK_B1_binding TPK_catalytic

Protein Analysis

231

Amino Acids

26.66

Weight (kDa)

9.23

Isoelectric Point (pI)

68.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ccdc124	PF06244	147 - 227	4.5e-34	Coiled-coil domain-containing protein 124 /Oxs1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02482 AT4G02510 AT4G02510 AT4G02510 AT4G02510
fragaria_vesca	FvH4_2g25480
malus_domestica	MD03G1285700.v1.1 MD11G1305100.v1.1
prunus_persica	Prupe.8G258800_v2.0.a1 Prupe.8G258800_v2.0.a1
pyrus_communis	pycom03g22640 pycom11g26690
rosa_chinensis	RchiOBHm_Chr6g0293691
rosa_laevigata	RLG00000011932
rosa_multiflora	Rmu_co8307375.1_g000001 Rmu_co8497971.1_g000001 Rmu_sc0005431.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173980
rosa_rugosa	Rorug06G0237500 Rorug06G0237500
rosa_samantha	Rh4AG062400 Rh4AG063400 Rh4AG067300 Rh4BG061800 Rh4CG068100 Rh4DG056700 Rh6AG350100 Rh6BG357600 Rh6CG364400 Rh6DG351300
rosa_wichuraiana	Rw0G022990 Rw6G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
AccBSI	CCGCTC	1 cut(s)	194
AccII	CGCG	7 cut(s)	120, 144, 159, 211, 282, 287, 391
AclWI	GGATC	2 cut(s)	283, 531
AcoI	YGGCCR	2 cut(s)	219, 252
AfaI	GTAC	2 cut(s)	113, 413
AfiI	CCNNNNNNNGG	4 cut(s)	103, 321, 337, 540
AgsI	TTSAA	2 cut(s)	569, 592
AjnI	CCWGG	2 cut(s)	584, 604
AluBI	AGCT	5 cut(s)	226, 241, 319, 580, 646
AluI	AGCT	5 cut(s)	226, 241, 319, 580, 646
Alw21I	GWGCWC	1 cut(s)	243
AlwI	GGATC	2 cut(s)	283, 531
Ama87I	CYCGRG	2 cut(s)	242, 533
AoxI	GGCC	6 cut(s)	168, 186, 201, 219, 252, 312
ApeKI	GCWGC	2 cut(s)	132, 686
AscI	GGCGCGCC	1 cut(s)	209
AspLEI	GCGC	9 cut(s)	62, 78, 120, 146, 159, 211, 213, 330, 393
AspS9I	GGNCC	1 cut(s)	295
AsuC2I	CCSGG	2 cut(s)	293, 332
AsuHPI	GGTGA	1 cut(s)	316
AvaI	CYCGRG	2 cut(s)	242, 533
AvaII	GGWCC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	254
BanII	GRGCYC	3 cut(s)	52, 243, 513
Bbv12I	GWGCWC	1 cut(s)	243
BbvCI	CCTCAGC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	144, 673
BccI	CCATC	3 cut(s)	10, 244, 346
BceAI	ACGGC	1 cut(s)	411
BciT130I	CCWGG	2 cut(s)	586, 606
BcnI	CCSGG	2 cut(s)	293, 332
BfaI	CTAG	1 cut(s)	45
BfoI	RGCGCY	2 cut(s)	63, 331
BglI	GCCNNNNNGGC	1 cut(s)	47
BlpI	GCTNAGC	1 cut(s)	576
BmcAI	AGTACT	1 cut(s)	113
Bme1390I	CCNGG	4 cut(s)	293, 332, 586, 606
Bme18I	GGWCC	1 cut(s)	295
BmeT110I	CYCGRG	2 cut(s)	242, 533
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	297, 510
BmrFI	CCNGG	4 cut(s)	293, 332, 586, 606
BplI	GAGNNNNNCTC	2 cut(s)	76, 108
BpmI	CTGGAG	1 cut(s)	248
Bpu10I	CCTNAGC	1 cut(s)	320
Bpu1102I	GCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	530
BpuMI	CCSGG	2 cut(s)	293, 332
BsaJI	CCNNGG	4 cut(s)	126, 183, 204, 584
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 347, 377, 395, 425
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 321, 337, 540
Bse118I	RCCGGY	1 cut(s)	517
Bse1I	ACTGG	1 cut(s)	119
BseBI	CCWGG	2 cut(s)	586, 606
BseDI	CCNNGG	4 cut(s)	126, 183, 204, 584
BseLI	CCNNNNNNNGG	4 cut(s)	103, 321, 337, 540
BseMII	CTCAG	4 cut(s)	311, 506, 567, 681
BseNI	ACTGG	1 cut(s)	119
BsePI	GCGCGC	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	144, 673
Bsh1236I	CGCG	7 cut(s)	120, 144, 159, 211, 282, 287, 391
BshFI	GGCC	6 cut(s)	170, 188, 203, 221, 254, 314
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	2 cut(s)	242, 533
BsiSI	CCGG	3 cut(s)	293, 331, 518
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	4 cut(s)	103, 321, 337, 540
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	6 cut(s)	170, 188, 203, 221, 254, 314
BsoBI	CYCGRG	2 cut(s)	242, 533
Bsp1286I	GDGCHC	3 cut(s)	52, 243, 513
Bsp143I	GATC	2 cut(s)	288, 523
Bsp1720I	GCTNAGC	1 cut(s)	576
Bsp68I	TCGCGA	1 cut(s)	287
BspANI	GGCC	6 cut(s)	170, 188, 203, 221, 254, 314
BspCNI	CTCAG	4 cut(s)	312, 505, 568, 682
BspFNI	CGCG	7 cut(s)	120, 144, 159, 211, 282, 287, 391
BspLI	GGNNCC	2 cut(s)	297, 510
BspPI	GGATC	2 cut(s)	283, 531
BsrBI	CCGCTC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	4 cut(s)	126, 183, 204, 584
BssHII	GCGCGC	1 cut(s)	209
BssMI	GATC	2 cut(s)	288, 523
Bst2UI	CCWGG	2 cut(s)	586, 606
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	564
BstC8I	GCNNGC	4 cut(s)	94, 180, 196, 211
BstDEI	CTNAG	4 cut(s)	320, 492, 576, 690
BstFNI	CGCG	7 cut(s)	120, 144, 159, 211, 282, 287, 391
BstH2I	RGCGCY	2 cut(s)	63, 331
BstHHI	GCGC	9 cut(s)	62, 78, 120, 146, 159, 211, 213, 330, 393
BstKTI	GATC	2 cut(s)	291, 526
BstMBI	GATC	2 cut(s)	288, 523
BstNI	CCWGG	2 cut(s)	586, 606
BstSCI	CCNGG	4 cut(s)	291, 330, 584, 604
BstUI	CGCG	7 cut(s)	120, 144, 159, 211, 282, 287, 391
BstV1I	GCAGC	2 cut(s)	144, 673
BsuRI	GGCC	6 cut(s)	170, 188, 203, 221, 254, 314
BtgZI	GCGATG	1 cut(s)	365
BtuMI	TCGCGA	1 cut(s)	287
Cac8I	GCNNGC	4 cut(s)	94, 180, 196, 211
CfoI	GCGC	9 cut(s)	62, 78, 120, 146, 159, 211, 213, 330, 393
Cfr10I	RCCGGY	1 cut(s)	517
Cfr13I	GGNCC	1 cut(s)	295
CseI	GACGC	2 cut(s)	271, 397
Csp6I	GTAC	2 cut(s)	112, 412
CviAII	CATG	1 cut(s)	634
CviQI	GTAC	2 cut(s)	112, 412
DdeI	CTNAG	4 cut(s)	320, 492, 576, 690
DpnI	GATC	2 cut(s)	290, 525
DpnII	GATC	2 cut(s)	288, 523
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	2 cut(s)	219, 252
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
EciI	GGCGGA	4 cut(s)	50, 70, 416, 521
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	3 cut(s)	52, 243, 513
Eco47I	GGWCC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	241
Eco88I	CYCGRG	2 cut(s)	242, 533
EcoICRI	GAGCTC	1 cut(s)	241
EcoRII	CCWGG	2 cut(s)	584, 604
EcoT38I	GRGCYC	3 cut(s)	52, 243, 513
FaeI	CATG	1 cut(s)	637
FaiI	YATR	3 cut(s)	635, 640, 649
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	1 cut(s)	633
FriOI	GRGCYC	3 cut(s)	52, 243, 513
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	9 cut(s)	61, 77, 119, 145, 158, 210, 212, 329, 392
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	2 cut(s)	63, 331
HaeIII	GGCC	6 cut(s)	170, 188, 203, 221, 254, 314
HapII	CCGG	3 cut(s)	293, 331, 518
HgaI	GACGC	2 cut(s)	271, 397
HhaI	GCGC	9 cut(s)	62, 78, 120, 146, 159, 211, 213, 330, 393
Hin1II	CATG	1 cut(s)	637
Hin6I	GCGC	9 cut(s)	60, 76, 118, 144, 157, 209, 211, 328, 391
HinP1I	GCGC	9 cut(s)	60, 76, 118, 144, 157, 209, 211, 328, 391
HinfI	GANTC	2 cut(s)	371, 452
HpaII	CCGG	3 cut(s)	293, 331, 518
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	367, 495
Hpy188III	TCNNGA	4 cut(s)	244, 286, 298, 662
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	4 cut(s)	229, 265, 295, 586
HpyCH4III	ACNGT	1 cut(s)	446
HpyF3I	CTNAG	4 cut(s)	320, 492, 576, 690
Hsp92II	CATG	1 cut(s)	637
HspAI	GCGC	9 cut(s)	60, 76, 118, 144, 157, 209, 211, 328, 391
Kzo9I	GATC	2 cut(s)	288, 523
LmnI	GCTCC	4 cut(s)	57, 106, 238, 508
Lsp1109I	GCAGC	2 cut(s)	144, 673
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	2 cut(s)	290, 525
MbiI	CCGCTC	1 cut(s)	194
MboI	GATC	2 cut(s)	288, 523
MboII	GAAGA	8 cut(s)	22, 25, 259, 370, 388, 391, 581, 664
MhlI	GDGCHC	3 cut(s)	52, 243, 513
MlsI	TGGCCA	1 cut(s)	254
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	345
Mox20I	TGGCCA	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	254
MspI	CCGG	3 cut(s)	293, 331, 518
MspR9I	CCNGG	4 cut(s)	293, 332, 586, 606
MvaI	CCWGG	2 cut(s)	586, 606
MvnI	CGCG	7 cut(s)	120, 144, 159, 211, 282, 287, 391
NciI	CCSGG	2 cut(s)	293, 332
NdeII	GATC	2 cut(s)	288, 523
NlaIII	CATG	1 cut(s)	637
NlaIV	GGNNCC	2 cut(s)	297, 510
NmeAIII	GCCGAG	8 cut(s)	31, 97, 151, 196, 208, 229, 247, 340
NmuCI	GTSAC	1 cut(s)	304
NruI	TCGCGA	1 cut(s)	287
PaeR7I	CTCGAG	1 cut(s)	242
PalAI	GGCGCGCC	1 cut(s)	209
PauI	GCGCGC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	452
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	584, 604
PspGI	CCWGG	2 cut(s)	584, 604
PspN4I	GGNNCC	2 cut(s)	297, 510
PspPI	GGNCC	1 cut(s)	295
PteI	GCGCGC	1 cut(s)	209
RruI	TCGCGA	1 cut(s)	287
RsaI	GTAC	2 cut(s)	113, 413
RsaNI	GTAC	2 cut(s)	112, 412
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	558
Sau3AI	GATC	2 cut(s)	288, 523
Sau96I	GGNCC	1 cut(s)	295
ScaI	AGTACT	1 cut(s)	113
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	4 cut(s)	293, 332, 586, 606
SduI	GDGCHC	3 cut(s)	52, 243, 513
Sfr274I	CTCGAG	1 cut(s)	242
SgsI	GGCGCGCC	1 cut(s)	209
SinI	GGWCC	1 cut(s)	295
SlaI	CTCGAG	1 cut(s)	242
SmlI	CTYRAG	2 cut(s)	242, 545
SmoI	CTYRAG	2 cut(s)	242, 545
SspMI	CTAG	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	4 cut(s)	291, 330, 584, 604
TaaI	ACNGT	1 cut(s)	446
TaqI	TCGA	4 cut(s)	243, 374, 434, 455
TatI	WGTACW	1 cut(s)	111
TauI	GCSGC	9 cut(s)	7, 44, 149, 191, 194, 282, 347, 350, 401
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	2 cut(s)	132, 686
Tsp45I	GTSAC	1 cut(s)	304
TspGWI	ACGGA	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	295
XhoI	CTCGAG	1 cut(s)	242
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.