Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004317

Physical Location & Seq

Genomic Coordinates Reverse (-)

14147213 .. 14162899

Gene Structure 15687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG067300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGGTGGAGATCATGTGCAGTGACCACGCTGAGTAGAGATGGTAGTGATTTGACAGCTACAACCATTGCCAAAACCACTGTTTTGAAAATCGATATCGATGAAACTAGTTACGGTGGTGTTGGTGTTTGGCCAAGTCTGGGTAGTGACGATGAGGAGGGGTTCGTCAGTGGGGAGGAGGATTTTGATCCTGTTTTGGATAAGGCGTTTGTCAGAGATGAACAACAAACCCTAGCTCCGGCAGAAGGGGAAGTAGTAGATAATAGCACCAGCGTTGTCAAATTTGTTAGTTCTTTCAAGTTTTTTCTGAGGCCAATTGCCAAGGTTTCAGTGGATGATGATGATGTCGAAGAAGAAGAAGAAGAAGATTCGAAAGCTAGTATGGAAGTGTTTAAGGAGTCTGTTGGGGTGGGTGAGAGTTCTGAGGTGAAGAAGGGTTTGAATTCCGGTGGTTTGGCAAAAGAGAATGGTGTTGGTGGTGAAGTAGAGAAGTCGAAAGTTGCGAAGGGTTTAGGCTATGTTTCTGTGGCTGAGATAGATGATAAGAAGGTTGTAGAGCCTAAGGAGAGTGAGGTTGTTAATGGTACGGCGGATGCTGTGAGGGACAGTAGTGAGAATGGCTTGGTTGAAGAGCATGGTGTGCAGTTTACTGGTGGAGATATTGATGTAGATGTTGAACAGGTACCAGAGGCCGAACAACGACCCGAGCTCGAGAGTCTTGAACAAGTTGCTCTTAGGCTCGGCGGTCTTGTCGGAGCTCTCGGCAGTAGCAGCGACCTCAAAACTGGTCCGACCGACGACAGGAGAAGTCTAGGGCCTGAGCTTGAAATCGGAGGAGGAGAGGGACCAGGATCGGCGGGAAAGAGCGGCGGAGAGGAGGAGGTTTGGGCGGAGAGGCGGAGGTTTGGGCGGAGAGGCGGTGAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0007186 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043021 GO:0043024 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0060089 GO:0061927 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

309

Amino Acids

32.7

Weight (kDa)

4.3

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02482 AT4G02510 AT4G02510 AT4G02510 AT4G02510
fragaria_vesca	FvH4_2g25480
malus_domestica	MD03G1285700.v1.1 MD11G1305100.v1.1
prunus_persica	Prupe.8G258800_v2.0.a1 Prupe.8G258800_v2.0.a1
pyrus_communis	pycom03g22640 pycom11g26690
rosa_chinensis	RchiOBHm_Chr6g0293691
rosa_laevigata	RLG00000011932
rosa_multiflora	Rmu_co8307375.1_g000001 Rmu_co8497971.1_g000001 Rmu_sc0005431.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173980
rosa_rugosa	Rorug06G0237500 Rorug06G0237500
rosa_samantha	Rh4AG062400 Rh4AG063400 Rh4AG067300 Rh4BG061800 Rh4CG068100 Rh4DG056700 Rh6AG350100 Rh6BG357600 Rh6CG364400 Rh6DG351300
rosa_wichuraiana	Rw0G022990 Rw6G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	682
AccB1I	GGYRCC	1 cut(s)	682
AccBSI	CCGCTC	1 cut(s)	867
AciI	CCGC	9 cut(s)	590, 744, 857, 867, 870, 890, 898, 910, 918
AclWI	GGATC	2 cut(s)	182, 859
AcoI	YGGCCR	1 cut(s)	131
AcsI	RAATTY	2 cut(s)	281, 442
AfaI	GTAC	2 cut(s)	586, 684
AfiI	CCNNNNNNNGG	4 cut(s)	140, 238, 245, 801
AgsI	TTSAA	7 cut(s)	88, 298, 442, 629, 677, 722, 827
AhlI	ACTAGT	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	847
AluBI	AGCT	6 cut(s)	59, 236, 377, 709, 758, 823
AluI	AGCT	6 cut(s)	59, 236, 377, 709, 758, 823
Alw21I	GWGCWC	2 cut(s)	711, 760
Alw26I	GTCTC	1 cut(s)	917
AlwI	GGATC	2 cut(s)	182, 859
Ama87I	CYCGRG	2 cut(s)	704, 710
AoxI	GGCC	4 cut(s)	131, 311, 690, 815
ApeKI	GCWGC	1 cut(s)	771
ApoI	RAATTY	2 cut(s)	281, 442
Asp718I	GGTACC	1 cut(s)	682
AspS9I	GGNCC	3 cut(s)	788, 815, 845
AsuHPI	GGTGA	3 cut(s)	425, 439, 491
AsuII	TTCGAA	1 cut(s)	371
AvaI	CYCGRG	2 cut(s)	704, 710
AvaII	GGWCC	2 cut(s)	788, 845
AxyI	CCTNAGG	1 cut(s)	561
BalI	TGGCCA	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	682
BanII	GRGCYC	2 cut(s)	711, 760
Bbv12I	GWGCWC	2 cut(s)	711, 760
BbvI	GCAGC	1 cut(s)	783
BccI	CCATC	1 cut(s)	35
BceAI	ACGGC	1 cut(s)	603
BciT130I	CCWGG	1 cut(s)	849
BcoDI	GTCTC	1 cut(s)	917
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	4 cut(s)	108, 233, 378, 812
BisI	GCNGC	2 cut(s)	772, 868
BlsI	GCNGC	2 cut(s)	773, 869
Bme1390I	CCNGG	1 cut(s)	849
Bme18I	GGWCC	2 cut(s)	788, 845
BmeT110I	CYCGRG	2 cut(s)	704, 710
BmgT120I	GGNCC	3 cut(s)	788, 815, 845
BmiI	GGNNCC	2 cut(s)	684, 846
BmrFI	CCNGG	1 cut(s)	849
BmsI	GCATC	1 cut(s)	583
Bpu10I	CCTNAGC	1 cut(s)	819
Bpu14I	TTCGAA	1 cut(s)	371
Bsa29I	ATCGAT	2 cut(s)	93, 99
BsaBI	GATNNNNATC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	321
BsaWI	WCCGGW	1 cut(s)	446
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 220, 250, 904
Bsc4I	CCNNNNNNNGG	4 cut(s)	140, 238, 245, 801
Bse1I	ACTGG	2 cut(s)	655, 790
Bse21I	CCTNAGG	1 cut(s)	561
Bse3DI	GCAATG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	849
BseCI	ATCGAT	2 cut(s)	93, 99
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	2 cut(s)	340, 598
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	4 cut(s)	140, 238, 245, 801
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	5 cut(s)	23, 299, 414, 522, 810
BseNI	ACTGG	2 cut(s)	655, 790
BseRI	GAGGAG	6 cut(s)	170, 191, 849, 852, 890, 893
BseXI	GCAGC	1 cut(s)	783
BsgI	GTGCAG	2 cut(s)	39, 662
Bsh1285I	CGRYCG	1 cut(s)	795
BshFI	GGCC	4 cut(s)	133, 313, 692, 817
BshNI	GGYRCC	1 cut(s)	682
BshVI	ATCGAT	2 cut(s)	93, 99
BsiEI	CGRYCG	1 cut(s)	795
BsiHKAI	GWGCWC	2 cut(s)	711, 760
BsiHKCI	CYCGRG	2 cut(s)	704, 710
BsiSI	CCGG	2 cut(s)	239, 447
BslFI	GGGAC	2 cut(s)	617, 858
BslI	CCNNNNNNNGG	4 cut(s)	140, 238, 245, 801
BsmAI	GTCTC	1 cut(s)	917
BsmFI	GGGAC	2 cut(s)	617, 858
BsnI	GGCC	4 cut(s)	133, 313, 692, 817
BsoBI	CYCGRG	2 cut(s)	704, 710
Bsp119I	TTCGAA	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	711, 760
Bsp143I	GATC	3 cut(s)	11, 187, 851
BspACI	CCGC	9 cut(s)	590, 744, 857, 867, 870, 890, 898, 910, 918
BspANI	GGCC	4 cut(s)	133, 313, 692, 817
BspCNI	CTCAG	5 cut(s)	24, 300, 415, 523, 811
BspDI	ATCGAT	2 cut(s)	93, 99
BspLI	GGNNCC	2 cut(s)	684, 846
BspPI	GGATC	2 cut(s)	182, 859
BspQI	GCTCTTC	1 cut(s)	624
BspT104I	TTCGAA	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	682
BsrBI	CCGCTC	1 cut(s)	867
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	655, 790
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	3 cut(s)	11, 187, 851
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	849
Bst4CI	ACNGT	3 cut(s)	82, 116, 608
Bst6I	CTCTTC	1 cut(s)	624
BstAPI	GCANNNNNTGC	1 cut(s)	640
BstBI	TTCGAA	1 cut(s)	371
BstDEI	CTNAG	7 cut(s)	32, 308, 423, 531, 561, 734, 819
BstF5I	GGATG	2 cut(s)	340, 598
BstKTI	GATC	3 cut(s)	14, 190, 854
BstMAI	GTCTC	1 cut(s)	917
BstMBI	GATC	3 cut(s)	11, 187, 851
BstMCI	CGRYCG	1 cut(s)	795
BstMWI	GCNNNNNNNGC	2 cut(s)	640, 771
BstNI	CCWGG	1 cut(s)	849
BstSCI	CCNGG	1 cut(s)	847
BstV1I	GCAGC	1 cut(s)	783
Bsu15I	ATCGAT	2 cut(s)	93, 99
Bsu36I	CCTNAGG	1 cut(s)	561
BsuRI	GGCC	4 cut(s)	133, 313, 692, 817
BsuTUI	ATCGAT	2 cut(s)	93, 99
BtsCI	GGATG	2 cut(s)	340, 598
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	4 cut(s)	27, 78, 175, 336
Cfr13I	GGNCC	3 cut(s)	788, 815, 845
ClaI	ATCGAT	2 cut(s)	93, 99
Csp6I	GTAC	2 cut(s)	585, 683
CviAII	CATG	2 cut(s)	15, 635
CviQI	GTAC	2 cut(s)	585, 683
DdeI	CTNAG	7 cut(s)	32, 308, 423, 531, 561, 734, 819
DpnI	GATC	3 cut(s)	13, 189, 853
DpnII	GATC	3 cut(s)	11, 187, 851
EaeI	YGGCCR	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
EciI	GGCGGA	5 cut(s)	605, 885, 905, 913, 925
Ecl136II	GAGCTC	2 cut(s)	709, 758
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	2 cut(s)	711, 760
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	2 cut(s)	788, 845
Eco53kI	GAGCTC	2 cut(s)	709, 758
Eco81I	CCTNAGG	1 cut(s)	561
Eco88I	CYCGRG	2 cut(s)	704, 710
EcoICRI	GAGCTC	2 cut(s)	709, 758
EcoO109I	RGGNCCY	1 cut(s)	815
EcoRI	GAATTC	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	847
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	2 cut(s)	711, 760
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	2 cut(s)	18, 638
FaiI	YATR	4 cut(s)	16, 383, 519, 636
FalI	AAGNNNNNCTT	2 cut(s)	717, 749
FaqI	GGGAC	2 cut(s)	617, 858
FatI	CATG	2 cut(s)	14, 634
FauI	CCCGC	1 cut(s)	850
Fnu4HI	GCNGC	2 cut(s)	772, 868
FokI	GGATG	2 cut(s)	347, 605
FriOI	GRGCYC	2 cut(s)	711, 760
Fsp4HI	GCNGC	2 cut(s)	772, 868
FspBI	CTAG	4 cut(s)	108, 233, 378, 812
GluI	GCNGC	2 cut(s)	772, 868
HaeIII	GGCC	4 cut(s)	133, 313, 692, 817
HapII	CCGG	2 cut(s)	239, 447
Hin1II	CATG	2 cut(s)	18, 638
HinfI	GANTC	3 cut(s)	368, 398, 715
HpaII	CCGG	2 cut(s)	239, 447
HphI	GGTGA	3 cut(s)	425, 439, 491
Hpy166II	GTNNAC	1 cut(s)	648
Hpy188I	TCNGA	6 cut(s)	215, 309, 424, 755, 792, 833
Hpy188III	TCNNGA	2 cut(s)	712, 719
Hpy8I	GTNNAC	1 cut(s)	648
Hpy99I	CGWCG	1 cut(s)	800
HpyAV	CCTTC	4 cut(s)	239, 427, 499, 541
HpyCH4III	ACNGT	3 cut(s)	82, 116, 608
HpyCH4V	TGCA	2 cut(s)	20, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	640, 771
HpyF3I	CTNAG	7 cut(s)	32, 308, 423, 531, 561, 734, 819
Hsp92II	CATG	2 cut(s)	18, 638
KpnI	GGTACC	1 cut(s)	686
Kzo9I	GATC	3 cut(s)	11, 187, 851
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	2 cut(s)	241, 755
Lsp1109I	GCAGC	1 cut(s)	783
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	4 cut(s)	108, 233, 378, 812
MaeIII	GTNAC	3 cut(s)	22, 110, 146
MalI	GATC	3 cut(s)	13, 189, 853
MbiI	CCGCTC	1 cut(s)	867
MboI	GATC	3 cut(s)	11, 187, 851
MboII	GAAGA	8 cut(s)	362, 365, 368, 371, 374, 377, 442, 641
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	2 cut(s)	711, 760
MlsI	TGGCCA	1 cut(s)	133
MluCI	AATT	3 cut(s)	281, 315, 442
MluNI	TGGCCA	1 cut(s)	133
MlyI	GAGTC	2 cut(s)	407, 724
MmeI	TCCRAC	2 cut(s)	733, 815
Mox20I	TGGCCA	1 cut(s)	133
MscI	TGGCCA	1 cut(s)	133
MseI	TTAA	2 cut(s)	393, 579
Msp20I	TGGCCA	1 cut(s)	133
MspI	CCGG	2 cut(s)	239, 447
MspR9I	CCNGG	1 cut(s)	849
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	849
MwoI	GCNNNNNNNGC	2 cut(s)	640, 771
NdeII	GATC	3 cut(s)	11, 187, 851
NlaIII	CATG	2 cut(s)	18, 638
NlaIV	GGNNCC	2 cut(s)	684, 846
NmeAIII	GCCGAG	2 cut(s)	720, 741
NmuCI	GTSAC	2 cut(s)	22, 146
NspV	TTCGAA	1 cut(s)	371
PaeR7I	CTCGAG	1 cut(s)	710
PciSI	GCTCTTC	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	773, 869
PleI	GAGTC	2 cut(s)	406, 723
PpsI	GAGTC	2 cut(s)	406, 723
Psp124BI	GAGCTC	2 cut(s)	711, 760
Psp6I	CCWGG	1 cut(s)	847
PspGI	CCWGG	1 cut(s)	847
PspN4I	GGNNCC	2 cut(s)	684, 846
PspPI	GGNCC	3 cut(s)	788, 815, 845
RsaI	GTAC	2 cut(s)	586, 684
RsaNI	GTAC	2 cut(s)	585, 683
SacI	GAGCTC	2 cut(s)	711, 760
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	2 cut(s)	393, 579
SatI	GCNGC	2 cut(s)	772, 868
Sau3AI	GATC	3 cut(s)	11, 187, 851
Sau96I	GGNCC	3 cut(s)	788, 815, 845
SchI	GAGTC	2 cut(s)	407, 724
ScrFI	CCNGG	1 cut(s)	849
SduI	GDGCHC	2 cut(s)	711, 760
SfaNI	GCATC	1 cut(s)	583
Sfr274I	CTCGAG	1 cut(s)	710
SfuI	TTCGAA	1 cut(s)	371
SinI	GGWCC	2 cut(s)	788, 845
SlaI	CTCGAG	1 cut(s)	710
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
SpeI	ACTAGT	1 cut(s)	107
Sse9I	AATT	3 cut(s)	281, 315, 442
SsiI	CCGC	9 cut(s)	590, 744, 857, 867, 870, 890, 898, 910, 918
SspMI	CTAG	4 cut(s)	108, 233, 378, 812
SstI	GAGCTC	2 cut(s)	711, 760
StyD4I	CCNGG	1 cut(s)	847
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	3 cut(s)	82, 116, 608
TaqI	TCGA	6 cut(s)	93, 99, 348, 371, 494, 711
TaqII	GACCGA	1 cut(s)	809
TasI	AATT	3 cut(s)	281, 315, 442
TauI	GCSGC	1 cut(s)	870
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	393, 579
Tru9I	TTAA	2 cut(s)	393, 579
TscAI	CASTG	4 cut(s)	27, 85, 175, 336
TseFI	GTSAC	2 cut(s)	22, 146
TseI	GCWGC	1 cut(s)	771
Tsp45I	GTSAC	2 cut(s)	22, 146
TspDTI	ATGAA	2 cut(s)	117, 234
TspRI	CASTG	4 cut(s)	27, 85, 175, 336
VpaK11BI	GGWCC	2 cut(s)	788, 845
XapI	RAATTY	2 cut(s)	281, 442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XhoI	CTCGAG	1 cut(s)	710
XspI	CTAG	4 cut(s)	108, 233, 378, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.