Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004317

Physical Location & Seq

Genomic Coordinates Forward (+)

13524027 .. 13527404

Gene Structure 3378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG063400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGGCAAACACTGAAAAACCAGAAATGGAGATGGTTTCACAAGATGATCATGAAGAAAGAGCAGACACTGAAAGAAAAAGACAGAGAATTCTGGGTAGTGACGATGAGGAGGGGTTCGTCAGTGGGGAGGAGGATTTTGATCCTGTTTTGGATAAGGCGTTTGTCAGAGATGAACAACAAACCCTAGCTCCGGCAGAAGGGGAAGTAGTAGATAATAGCACCAGCGTTGTCAAATTTGTTAGTTCTTTCAAGTTTTTTCTGAGGCCAATTGCCAAGGTTTCAGTGGATGATGATGATGTCGAAGAAGAAGAAGAAGAAGATTCGAAAGCTAGTATGGAAGTGTTTAAGGAGTCTGTTGGGGTGGGTGAGAGTTCTGAGGTGAAGAAGGGTTTGAATTCCGGTGGTTTGGCAAAAGAGAATGGTGTTGGTGGTGAAGTAGAGAAGTCGAAAGTTGCGAAGGGTTTAGGCTATGTTTCTGTGGCTGAGATAGATGATAAGAAGGTTGTAGAGCCTAAGGAGAGTGAGGTTGTTAATGGTACGGCGGATGCTGTGAGGGACAGTAGTGAGAATGGCTTGGTTGAAGAGCATGGTGTGCAGTTTACTGGTGGAGGTGACTTAGTCGTGGAAGCTGTCCATGTTGATTTTGTCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0007186 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043021 GO:0043024 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0060089 GO:0061927 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

218

Amino Acids

23.61

Weight (kDa)

4.29

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02482 AT4G02510 AT4G02510 AT4G02510 AT4G02510
fragaria_vesca	FvH4_2g25480
malus_domestica	MD03G1285700.v1.1 MD11G1305100.v1.1
prunus_persica	Prupe.8G258800_v2.0.a1 Prupe.8G258800_v2.0.a1
pyrus_communis	pycom03g22640 pycom11g26690
rosa_chinensis	RchiOBHm_Chr6g0293691
rosa_laevigata	RLG00000011932
rosa_multiflora	Rmu_co8307375.1_g000001 Rmu_co8497971.1_g000001 Rmu_sc0005431.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173980
rosa_rugosa	Rorug06G0237500 Rorug06G0237500
rosa_samantha	Rh4AG062400 Rh4AG063400 Rh4AG067300 Rh4BG061800 Rh4CG068100 Rh4DG056700 Rh6AG350100 Rh6BG357600 Rh6CG364400 Rh6DG351300
rosa_wichuraiana	Rw0G022990 Rw6G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 545
AclWI	GGATC	1 cut(s)	137
AcsI	RAATTY	3 cut(s)	90, 236, 397
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	2 cut(s)	193, 200
AgsI	TTSAA	3 cut(s)	253, 397, 584
AluBI	AGCT	3 cut(s)	191, 332, 632
AluI	AGCT	3 cut(s)	191, 332, 632
AlwI	GGATC	1 cut(s)	137
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	266
ApoI	RAATTY	3 cut(s)	90, 236, 397
AsuHPI	GGTGA	4 cut(s)	380, 394, 446, 626
AsuII	TTCGAA	1 cut(s)	326
AxyI	CCTNAGG	1 cut(s)	516
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	558
BclI	TGATCA	1 cut(s)	49
BfaI	CTAG	2 cut(s)	188, 333
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmsI	GCATC	1 cut(s)	538
Bpu14I	TTCGAA	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	401
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 200
Bse1I	ACTGG	1 cut(s)	610
Bse21I	CCTNAGG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	2 cut(s)	295, 553
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	193, 200
BseMII	CTCAG	3 cut(s)	254, 369, 477
BseNI	ACTGG	1 cut(s)	610
BseRI	GAGGAG	2 cut(s)	125, 146
BsgI	GTGCAG	1 cut(s)	617
BshFI	GGCC	1 cut(s)	268
BsiSI	CCGG	2 cut(s)	194, 402
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	2 cut(s)	193, 200
BsmFI	GGGAC	1 cut(s)	572
BsnI	GGCC	1 cut(s)	268
Bsp119I	TTCGAA	1 cut(s)	326
Bsp143I	GATC	2 cut(s)	49, 142
BspACI	CCGC	2 cut(s)	5, 545
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	3 cut(s)	255, 370, 478
BspHI	TCATGA	1 cut(s)	52
BspPI	GGATC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	579
BspT104I	TTCGAA	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	610
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	2 cut(s)	49, 142
BssT1I	CCWWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	563
Bst6I	CTCTTC	1 cut(s)	579
BstAPI	GCANNNNNTGC	1 cut(s)	595
BstBI	TTCGAA	1 cut(s)	326
BstDEI	CTNAG	5 cut(s)	263, 378, 486, 516, 619
BstF5I	GGATG	2 cut(s)	295, 553
BstKTI	GATC	2 cut(s)	52, 145
BstMBI	GATC	2 cut(s)	49, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	595
Bsu36I	CCTNAGG	1 cut(s)	516
BsuRI	GGCC	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	295, 553
BtsIMutI	CAGTG	4 cut(s)	12, 69, 130, 291
CaiI	CAGNNNCTG	1 cut(s)	71
CciI	TCATGA	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	540
CviAII	CATG	3 cut(s)	53, 590, 638
CviJI	RGCY	8 cut(s)	191, 268, 332, 471, 485, 514, 576, 632
CviKI_1	RGCY	8 cut(s)	191, 268, 332, 471, 485, 514, 576, 632
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	5 cut(s)	263, 378, 486, 516, 619
DpnI	GATC	2 cut(s)	51, 144
DpnII	GATC	2 cut(s)	49, 142
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
EciI	GGCGGA	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	276
Eco81I	CCTNAGG	1 cut(s)	516
EcoRI	GAATTC	2 cut(s)	90, 397
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	3 cut(s)	56, 593, 641
FaiI	YATR	6 cut(s)	54, 338, 474, 591, 639, 655
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	3 cut(s)	52, 589, 637
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	302, 560
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	188, 333
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	2 cut(s)	194, 402
Hin1II	CATG	3 cut(s)	56, 593, 641
HinfI	GANTC	2 cut(s)	323, 353
HpaII	CCGG	2 cut(s)	194, 402
HphI	GGTGA	4 cut(s)	380, 394, 446, 626
Hpy166II	GTNNAC	1 cut(s)	603
Hpy188I	TCNGA	3 cut(s)	170, 264, 379
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	603
HpyAV	CCTTC	4 cut(s)	194, 382, 454, 496
HpyCH4III	ACNGT	1 cut(s)	563
HpyCH4V	TGCA	1 cut(s)	598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	595
HpyF3I	CTNAG	5 cut(s)	263, 378, 486, 516, 619
Hsp92II	CATG	3 cut(s)	56, 593, 641
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	49, 142
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	7 cut(s)	36, 80, 159, 207, 238, 415, 591
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	2 cut(s)	188, 333
MaeIII	GTNAC	3 cut(s)	101, 614, 649
MalI	GATC	2 cut(s)	51, 144
MboI	GATC	2 cut(s)	49, 142
MboII	GAAGA	9 cut(s)	68, 317, 320, 323, 326, 329, 332, 397, 596
MfeI	CAATTG	1 cut(s)	270
MluCI	AATT	4 cut(s)	90, 236, 270, 397
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	9 cut(s)	103, 106, 124, 127, 258, 373, 520, 549, 605
MseI	TTAA	2 cut(s)	348, 534
MspI	CCGG	2 cut(s)	194, 402
MunI	CAATTG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	595
NdeII	GATC	2 cut(s)	49, 142
NlaIII	CATG	3 cut(s)	56, 593, 641
NmuCI	GTSAC	3 cut(s)	101, 614, 649
NspV	TTCGAA	1 cut(s)	326
PagI	TCATGA	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	323
PflFI	GACNNNGTC	1 cut(s)	620
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	71
PsyI	GACNNNGTC	1 cut(s)	620
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
SapI	GCTCTTC	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	348, 534
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	49, 142
SchI	GAGTC	1 cut(s)	362
SetI	ASST	8 cut(s)	193, 282, 334, 384, 507, 531, 616, 634
SfaNI	GCATC	1 cut(s)	538
SfuI	TTCGAA	1 cut(s)	326
Sse9I	AATT	4 cut(s)	90, 236, 270, 397
SsiI	CCGC	2 cut(s)	5, 545
SspMI	CTAG	2 cut(s)	188, 333
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	563
TaqI	TCGA	3 cut(s)	303, 326, 449
TasI	AATT	4 cut(s)	90, 236, 270, 397
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	2 cut(s)	348, 534
Tru9I	TTAA	2 cut(s)	348, 534
TscAI	CASTG	4 cut(s)	19, 76, 130, 291
TseFI	GTSAC	3 cut(s)	101, 614, 649
Tsp45I	GTSAC	3 cut(s)	101, 614, 649
TspDTI	ATGAA	2 cut(s)	69, 189
TspRI	CASTG	4 cut(s)	19, 76, 130, 291
Tth111I	GACNNNGTC	1 cut(s)	620
XapI	RAATTY	3 cut(s)	90, 236, 397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XspI	CTAG	2 cut(s)	188, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.