Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005431.1

Orthogroup ID

OG0004317

Physical Location & Seq

Genomic Coordinates Reverse (-)

26984 .. 27934

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005431.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atggactcctccaagctctccgctccacaattccctctacactcatcagcttcttcttcttcttcctccgcttcttctgtttcctctgcttcttccgactctgaaattgatgttaatttagccaaaaccactgttttgaaaattgatatcgatgaaactagttacggtggtgttggtgtttggccaagtctgggtagtgacaatgaggaggggttcgtcagtggggaggaggattttgatcctgttctggataaggcgtttgtcagagatgaacaacaaaccctagctccggcggaaggggaagtagtagataatagcaccagcgctgtcaaatttattagttctttcaagttttttctgaggccaattgccaaggtttcggtggatgatgatgatgccgaagaagaagaagaagatttgaaagccagtatggaagtgtttaaggagtctgttggggtggagaatggtgttggtgttgaagtagagaagtcgaacgttgcggagggtttaggctatgtttctgtggctgagatagatgataagaaggttgtagagcctaaggagagtgaggttgttaatggtaccgcggaagctgggagggacagtagtgagaatggcttagttgaagagcatggtgtgcagtttactagtggaggagcagctgttgttggcgatgtggagaagattgatgagtctgagataaaacggttggaggttccggtaggggtgagcttagataatgagtttgatcaaattagctgggagggtgaaaagccgaaaggttcagagttggtggctgtggagtctaagtctgaacgagtggttgttgctgaaccagcagttgacggagtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0007186 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043021 GO:0043024 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0060089 GO:0061927 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

284

Amino Acids

30.03

Weight (kDa)

4.11

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02482 AT4G02510 AT4G02510 AT4G02510 AT4G02510
fragaria_vesca	FvH4_2g25480
malus_domestica	MD03G1285700.v1.1 MD11G1305100.v1.1
prunus_persica	Prupe.8G258800_v2.0.a1 Prupe.8G258800_v2.0.a1
pyrus_communis	pycom03g22640 pycom11g26690
rosa_chinensis	RchiOBHm_Chr6g0293691
rosa_laevigata	RLG00000011932
rosa_multiflora	Rmu_co8307375.1_g000001 Rmu_co8497971.1_g000001 Rmu_sc0005431.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173980
rosa_rugosa	Rorug06G0237500 Rorug06G0237500
rosa_samantha	Rh4AG062400 Rh4AG063400 Rh4AG067300 Rh4BG061800 Rh4CG068100 Rh4DG056700 Rh6AG350100 Rh6BG357600 Rh6CG364400 Rh6DG351300
rosa_wichuraiana	Rw0G022990 Rw6G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	581
AccB1I	GGYRCC	1 cut(s)	581
AccBSI	CCGCTC	1 cut(s)	23
AccII	CGCG	1 cut(s)	587
AciI	CCGC	6 cut(s)	21, 69, 293, 500, 585, 587
AclI	AACGTT	1 cut(s)	495
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	1 cut(s)	583
AfeI	AGCGCT	1 cut(s)	325
AfiI	CCNNNNNNNGG	3 cut(s)	191, 289, 296
AgsI	TTSAA	5 cut(s)	139, 349, 421, 479, 626
AhlI	ACTAGT	2 cut(s)	158, 647
AluBI	AGCT	7 cut(s)	16, 50, 287, 593, 662, 732, 759
AluI	AGCT	7 cut(s)	16, 50, 287, 593, 662, 732, 759
AlwI	GGATC	1 cut(s)	233
Aor51HI	AGCGCT	1 cut(s)	325
AoxI	GGCC	2 cut(s)	182, 362
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	1 cut(s)	332
Asp718I	GGTACC	1 cut(s)	581
AspLEI	GCGC	1 cut(s)	326
AsuHPI	GGTGA	2 cut(s)	739, 779
AxyI	CCTNAGG	1 cut(s)	558
BalI	TGGCCA	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	581
BbvI	GCAGC	1 cut(s)	671
BclI	TGATCA	1 cut(s)	748
BcuI	ACTAGT	2 cut(s)	158, 647
BfaI	CTAG	3 cut(s)	159, 284, 648
BfoI	RGCGCY	1 cut(s)	327
BisI	GCNGC	1 cut(s)	660
BlsI	GCNGC	1 cut(s)	661
BmiI	GGNNCC	2 cut(s)	583, 717
BmsI	GCATC	1 cut(s)	385
Bsa29I	ATCGAT	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	372, 585
BsaWI	WCCGGW	1 cut(s)	718
BsaXI	ACNNNNNCTCC	8 cut(s)	271, 301, 589, 619, 648, 678, 794, 824
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 289, 296
Bse1I	ACTGG	1 cut(s)	426
Bse21I	CCTNAGG	1 cut(s)	558
Bse8I	GATNNNNATC	1 cut(s)	237
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	372, 585
BseGI	GGATG	1 cut(s)	391
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	3 cut(s)	191, 289, 296
BseMII	CTCAG	3 cut(s)	350, 519, 687
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	3 cut(s)	221, 242, 669
BseXI	GCAGC	1 cut(s)	671
BseYI	CCCAGC	2 cut(s)	593, 759
BsgI	GTGCAG	1 cut(s)	659
Bsh1236I	CGCG	1 cut(s)	587
BshFI	GGCC	2 cut(s)	184, 364
BshNI	GGYRCC	1 cut(s)	581
BshVI	ATCGAT	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	290, 719
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	3 cut(s)	191, 289, 296
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	2 cut(s)	184, 364
Bsp143I	GATC	2 cut(s)	238, 748
BspACI	CCGC	6 cut(s)	21, 69, 293, 500, 585, 587
BspANI	GGCC	2 cut(s)	184, 364
BspCNI	CTCAG	3 cut(s)	351, 520, 688
BspDI	ATCGAT	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	587
BspLI	GGNNCC	2 cut(s)	583, 717
BspPI	GGATC	1 cut(s)	233
BspQI	GCTCTTC	1 cut(s)	621
BspT107I	GGYRCC	1 cut(s)	581
BsrBI	CCGCTC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	2 cut(s)	372, 585
BssMI	GATC	2 cut(s)	238, 748
BssT1I	CCWWGG	1 cut(s)	372
Bst4CI	ACNGT	4 cut(s)	133, 167, 605, 708
Bst6I	CTCTTC	1 cut(s)	621
BstAPI	GCANNNNNTGC	1 cut(s)	637
BstDEI	CTNAG	7 cut(s)	359, 528, 558, 619, 696, 733, 807
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	587
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	2 cut(s)	241, 751
BstMBI	GATC	2 cut(s)	238, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	637, 836
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	1 cut(s)	671
Bsu15I	ATCGAT	1 cut(s)	150
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	184, 364
BsuTUI	ATCGAT	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	585
BtgZI	GCGATG	1 cut(s)	687
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	129, 226
CfoI	GCGC	1 cut(s)	326
Cfr42I	CCGCGG	1 cut(s)	588
ClaI	ATCGAT	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	582
CviAII	CATG	1 cut(s)	632
CviQI	GTAC	1 cut(s)	582
DdeI	CTNAG	7 cut(s)	359, 528, 558, 619, 696, 733, 807
DpnI	GATC	2 cut(s)	240, 750
DpnII	GATC	2 cut(s)	238, 748
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
EciI	GGCGGA	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	372
Eco32I	GATATC	1 cut(s)	148
Eco47III	AGCGCT	1 cut(s)	325
Eco81I	CCTNAGG	1 cut(s)	558
EcoRV	GATATC	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	1 cut(s)	635
FaiI	YATR	3 cut(s)	431, 516, 633
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	1 cut(s)	631
FbaI	TGATCA	1 cut(s)	748
Fnu4HI	GCNGC	1 cut(s)	660
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	660
FspBI	CTAG	3 cut(s)	159, 284, 648
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	1 cut(s)	660
GsaI	CCCAGC	2 cut(s)	597, 763
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	184, 364
HapII	CCGG	2 cut(s)	290, 719
HhaI	GCGC	1 cut(s)	326
Hin1II	CATG	1 cut(s)	635
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HincII	GTYRAC	1 cut(s)	844
HindII	GTYRAC	1 cut(s)	844
HinfI	GANTC	6 cut(s)	5, 98, 446, 692, 803, 849
HpaII	CCGG	2 cut(s)	290, 719
HphI	GGTGA	2 cut(s)	739, 779
Hpy166II	GTNNAC	2 cut(s)	645, 844
Hpy188I	TCNGA	7 cut(s)	97, 103, 266, 360, 697, 787, 814
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	2 cut(s)	645, 844
HpyAV	CCTTC	2 cut(s)	290, 538
HpyCH4III	ACNGT	4 cut(s)	133, 167, 605, 708
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	1 cut(s)	640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	637, 836
HpyF3I	CTNAG	7 cut(s)	359, 528, 558, 619, 696, 733, 807
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	1 cut(s)	635
HspAI	GCGC	1 cut(s)	324
KpnI	GGTACC	1 cut(s)	585
Ksp22I	TGATCA	1 cut(s)	748
KspI	CCGCGG	1 cut(s)	588
Kzo9I	GATC	2 cut(s)	238, 748
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	3 cut(s)	28, 292, 656
Lsp1109I	GCAGC	1 cut(s)	671
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	3 cut(s)	159, 284, 648
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	2 cut(s)	161, 197
MalI	GATC	2 cut(s)	240, 750
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	2 cut(s)	238, 748
MfeI	CAATTG	1 cut(s)	366
MlsI	TGGCCA	1 cut(s)	184
MluCI	AATT	7 cut(s)	29, 105, 115, 141, 332, 366, 753
MluNI	TGGCCA	1 cut(s)	184
MlyI	GAGTC	4 cut(s)	92, 455, 701, 812
MmeI	TCCRAC	2 cut(s)	120, 690
Mox20I	TGGCCA	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	184
MseI	TTAA	3 cut(s)	114, 441, 576
Msp20I	TGGCCA	1 cut(s)	184
MspA1I	CMGCKG	2 cut(s)	587, 662
MspI	CCGG	2 cut(s)	290, 719
MunI	CAATTG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	2 cut(s)	637, 836
NdeII	GATC	2 cut(s)	238, 748
NlaIII	CATG	1 cut(s)	635
NlaIV	GGNNCC	2 cut(s)	583, 717
NmuCI	GTSAC	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	621
PflFI	GACNNNGTC	1 cut(s)	848
PkrI	GCNGC	1 cut(s)	661
PleI	GAGTC	4 cut(s)	92, 454, 700, 811
PpsI	GAGTC	4 cut(s)	92, 454, 700, 811
Psp1406I	AACGTT	1 cut(s)	495
PspFI	CCCAGC	2 cut(s)	593, 759
PspN4I	GGNNCC	2 cut(s)	583, 717
PsyI	GACNNNGTC	1 cut(s)	848
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	1 cut(s)	583
RsaNI	GTAC	1 cut(s)	582
SacII	CCGCGG	1 cut(s)	588
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	3 cut(s)	114, 441, 576
SatI	GCNGC	1 cut(s)	660
Sau3AI	GATC	2 cut(s)	238, 748
SchI	GAGTC	4 cut(s)	92, 455, 701, 812
SfaNI	GCATC	1 cut(s)	385
Sfr303I	CCGCGG	1 cut(s)	588
SgrBI	CCGCGG	1 cut(s)	588
SpeI	ACTAGT	2 cut(s)	158, 647
Sse9I	AATT	7 cut(s)	29, 105, 115, 141, 332, 366, 753
SsiI	CCGC	6 cut(s)	21, 69, 293, 500, 585, 587
SspMI	CTAG	3 cut(s)	159, 284, 648
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	4 cut(s)	133, 167, 605, 708
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	2 cut(s)	150, 491
TasI	AATT	7 cut(s)	29, 105, 115, 141, 332, 366, 753
Tru1I	TTAA	3 cut(s)	114, 441, 576
Tru9I	TTAA	3 cut(s)	114, 441, 576
TscAI	CASTG	2 cut(s)	136, 226
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	659
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	168, 285
TspRI	CASTG	2 cut(s)	136, 226
Tth111I	GACNNNGTC	1 cut(s)	848
XapI	RAATTY	1 cut(s)	332
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XspI	CTAG	3 cut(s)	159, 284, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.