Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004317

Physical Location & Seq

Genomic Coordinates Forward (+)

1092012 .. 1092610

Gene Structure 599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02482.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGGAGTGTCTCTAAAAAATTCGAAAGATGATTTAACAGTCACAGCCAATCTACGACATCAAGTCTCTGTGGGAAGACAGACAAAGGTAACAACTTTTGTAAGTCTTGACAGCAAGAGGACCGGGTGTTTCACTGTCCGAACAAACAGCTCAGATCAGTTGCAGATTGCTGTCATGGCTCTGCTTCTCCTTGCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0007186 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043021 GO:0043024 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0060089 GO:0061927 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

66

Amino Acids

7.2

Weight (kDa)

10.02

Isoelectric Point (pI)

26.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOC159_MAD	PF11886	2 - 65	2e-15	Translocase of chloroplast 159/132, membrane anchor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02482 AT4G02510 AT4G02510 AT4G02510 AT4G02510
fragaria_vesca	FvH4_2g25480
malus_domestica	MD03G1285700.v1.1 MD11G1305100.v1.1
prunus_persica	Prupe.8G258800_v2.0.a1 Prupe.8G258800_v2.0.a1
pyrus_communis	pycom03g22640 pycom11g26690
rosa_chinensis	RchiOBHm_Chr6g0293691
rosa_laevigata	RLG00000011932
rosa_multiflora	Rmu_co8307375.1_g000001 Rmu_co8497971.1_g000001 Rmu_sc0005431.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173980
rosa_rugosa	Rorug06G0237500 Rorug06G0237500
rosa_samantha	Rh4AG062400 Rh4AG063400 Rh4AG067300 Rh4BG061800 Rh4CG068100 Rh4DG056700 Rh6AG350100 Rh6BG357600 Rh6CG364400 Rh6DG351300
rosa_wichuraiana	Rw0G022990 Rw6G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	19
AhdI	GACNNNNNGTC	1 cut(s)	62
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
Alw26I	GTCTC	2 cut(s)	15, 70
ApoI	RAATTY	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	120
AsuC2I	CCSGG	1 cut(s)	124
AsuII	TTCGAA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	15, 70
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	120
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	82
Bpu14I	TTCGAA	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	15, 70
Bsp119I	TTCGAA	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	23
BssMI	GATC	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	40, 136
BstBI	TTCGAA	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	151
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	2 cut(s)	15, 70
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	122
BstV2I	GAAGAC	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	120
CviAII	CATG	2 cut(s)	175, 196
CviJI	RGCY	3 cut(s)	47, 150, 179
CviKI_1	RGCY	3 cut(s)	47, 150, 179
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
DriI	GACNNNNNGTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	120
FaeI	CATG	2 cut(s)	178, 199
FaiI	YATR	2 cut(s)	176, 197
FatI	CATG	2 cut(s)	174, 195
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	2 cut(s)	178, 199
HpaII	CCGG	1 cut(s)	123
Hpy188I	TCNGA	2 cut(s)	140, 154
Hpy188III	TCNNGA	1 cut(s)	107
HpyCH4III	ACNGT	2 cut(s)	40, 136
HpyCH4V	TGCA	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	151
Hsp92II	CATG	2 cut(s)	178, 199
Kzo9I	GATC	1 cut(s)	154
LpnPI	CCDG	1 cut(s)	136
MaeIII	GTNAC	2 cut(s)	40, 88
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	87
MluCI	AATT	1 cut(s)	19
MnlI	CCTC	1 cut(s)	111
MseI	TTAA	1 cut(s)	35
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	176
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	2 cut(s)	178, 199
NmuCI	GTSAC	1 cut(s)	40
NspV	TTCGAA	1 cut(s)	23
PspPI	GGNCC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	35
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	120
ScrFI	CCNGG	1 cut(s)	124
SetI	ASST	2 cut(s)	90, 152
SfuI	TTCGAA	1 cut(s)	23
SgeI	CNNG	6 cut(s)	74, 119, 127, 135, 136, 187
SinI	GGWCC	1 cut(s)	120
Sse9I	AATT	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	122
TaaI	ACNGT	2 cut(s)	40, 136
TaqI	TCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	40
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.