Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004317

Physical Location & Seq

Genomic Coordinates Forward (+)

12730110 .. 12738630

Gene Structure 8521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG068100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTGGATTGGATTTTGGGGAATCTGGGTAGTGACGATGAGGAGGGGTTCGTCAGTGGGGAGGAGGATTTTGATCCTGTTTTGGATAAGGCGTTTGTCAGAGATGAACAACAAACCCTAGCTCCGGCAGAAGGGGAAGTAGTAGATAATAGCACCAGCGTTGTCAAATTTGTTAGTTCTTTCAAGTTTTTTCTGAGGCCAATTGCCAAGGTTTCAGTGGATGATGATGATGTCGAAGAAGAAGAAGAAGAAGATTCGAAAGCTAGTATGGAAGTGTTTAAGGAGTCTGTTGGGGTGGGTGAGAGTTCTGAGGTGAAGAAGGGTTTGAATTCCGGTGGTTTGGCAAAAGAGAATGGTGTTGGTGGTGAAGTAGAGAAGTCGAAAGTTGCGAAGGGTTTAGGCTATGTTTCTGTGGCTGAGATAGATGATAAGAAGGTTGTAGAGCCTAAGGAGAGTGAGGTTGTTAATGGTACGGCGGATGCTGTGAGGGACAGTAGTGAGAATGGCTTGGTTGAAGAGCATGGTGTGCAGTTTACTGGTGGAGGTGACTTAGTCGTGGAAGCTGTCCATGTTGATTTTGTCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0007186 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043021 GO:0043024 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0060089 GO:0061927 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

195

Amino Acids

20.82

Weight (kDa)

4.16

Isoelectric Point (pI)

31.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02482 AT4G02510 AT4G02510 AT4G02510 AT4G02510
fragaria_vesca	FvH4_2g25480
malus_domestica	MD03G1285700.v1.1 MD11G1305100.v1.1
prunus_persica	Prupe.8G258800_v2.0.a1 Prupe.8G258800_v2.0.a1
pyrus_communis	pycom03g22640 pycom11g26690
rosa_chinensis	RchiOBHm_Chr6g0293691
rosa_laevigata	RLG00000011932
rosa_multiflora	Rmu_co8307375.1_g000001 Rmu_co8497971.1_g000001 Rmu_sc0005431.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173980
rosa_rugosa	Rorug06G0237500 Rorug06G0237500
rosa_samantha	Rh4AG062400 Rh4AG063400 Rh4AG067300 Rh4BG061800 Rh4CG068100 Rh4DG056700 Rh6AG350100 Rh6BG357600 Rh6CG364400 Rh6DG351300
rosa_wichuraiana	Rw0G022990 Rw6G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	476
AclWI	GGATC	1 cut(s)	68
AcsI	RAATTY	2 cut(s)	167, 328
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	2 cut(s)	124, 131
AgsI	TTSAA	3 cut(s)	184, 328, 515
AluBI	AGCT	3 cut(s)	122, 263, 563
AluI	AGCT	3 cut(s)	122, 263, 563
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	197
ApoI	RAATTY	2 cut(s)	167, 328
AsuHPI	GGTGA	4 cut(s)	311, 325, 377, 557
AsuII	TTCGAA	1 cut(s)	257
AxyI	CCTNAGG	1 cut(s)	447
BceAI	ACGGC	1 cut(s)	489
BfaI	CTAG	2 cut(s)	119, 264
BmsI	GCATC	1 cut(s)	469
Bpu14I	TTCGAA	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	332
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 131
Bse1I	ACTGG	1 cut(s)	541
Bse21I	CCTNAGG	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	2 cut(s)	226, 484
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	2 cut(s)	124, 131
BseMII	CTCAG	3 cut(s)	185, 300, 408
BseNI	ACTGG	1 cut(s)	541
BseRI	GAGGAG	2 cut(s)	56, 77
BsgI	GTGCAG	1 cut(s)	548
BshFI	GGCC	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	125, 333
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	2 cut(s)	124, 131
BsmFI	GGGAC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	199
Bsp119I	TTCGAA	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	1 cut(s)	476
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	3 cut(s)	186, 301, 409
BspPI	GGATC	1 cut(s)	68
BspQI	GCTCTTC	1 cut(s)	510
BspT104I	TTCGAA	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	541
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	1 cut(s)	510
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstBI	TTCGAA	1 cut(s)	257
BstDEI	CTNAG	5 cut(s)	194, 309, 417, 447, 550
BstF5I	GGATG	2 cut(s)	226, 484
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	526
Bsu36I	CCTNAGG	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	226, 484
BtsIMutI	CAGTG	2 cut(s)	61, 222
Csp6I	GTAC	1 cut(s)	471
CviAII	CATG	2 cut(s)	521, 569
CviJI	RGCY	8 cut(s)	122, 199, 263, 402, 416, 445, 507, 563
CviKI_1	RGCY	8 cut(s)	122, 199, 263, 402, 416, 445, 507, 563
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	5 cut(s)	194, 309, 417, 447, 550
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
EciI	GGCGGA	1 cut(s)	491
Eco130I	CCWWGG	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	524, 572
FaiI	YATR	5 cut(s)	269, 405, 522, 570, 586
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	2 cut(s)	520, 568
FokI	GGATG	2 cut(s)	233, 491
FspBI	CTAG	2 cut(s)	119, 264
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	2 cut(s)	125, 333
Hin1II	CATG	2 cut(s)	524, 572
HinfI	GANTC	3 cut(s)	22, 254, 284
HpaII	CCGG	2 cut(s)	125, 333
HphI	GGTGA	4 cut(s)	311, 325, 377, 557
Hpy166II	GTNNAC	1 cut(s)	534
Hpy188I	TCNGA	3 cut(s)	101, 195, 310
Hpy8I	GTNNAC	1 cut(s)	534
HpyAV	CCTTC	4 cut(s)	125, 313, 385, 427
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4V	TGCA	1 cut(s)	529
HpyF10VI	GCNNNNNNNGC	1 cut(s)	526
HpyF3I	CTNAG	5 cut(s)	194, 309, 417, 447, 550
Hsp92II	CATG	2 cut(s)	524, 572
Kzo9I	GATC	1 cut(s)	73
LguI	GCTCTTC	1 cut(s)	510
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	6 cut(s)	11, 90, 138, 169, 346, 522
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	119, 264
MaeIII	GTNAC	3 cut(s)	32, 545, 580
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	8 cut(s)	248, 251, 254, 257, 260, 263, 328, 527
MfeI	CAATTG	1 cut(s)	201
MluCI	AATT	3 cut(s)	167, 201, 328
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	9 cut(s)	34, 37, 55, 58, 189, 304, 451, 480, 536
MseI	TTAA	2 cut(s)	279, 465
MspI	CCGG	2 cut(s)	125, 333
MunI	CAATTG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	526
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	524, 572
NmuCI	GTSAC	3 cut(s)	32, 545, 580
NspV	TTCGAA	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	22, 254
PflFI	GACNNNGTC	1 cut(s)	551
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	551
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
SapI	GCTCTTC	1 cut(s)	510
SaqAI	TTAA	2 cut(s)	279, 465
Sau3AI	GATC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	293
SetI	ASST	8 cut(s)	124, 213, 265, 315, 438, 462, 547, 565
SfaNI	GCATC	1 cut(s)	469
SfuI	TTCGAA	1 cut(s)	257
Sse9I	AATT	3 cut(s)	167, 201, 328
SsiI	CCGC	1 cut(s)	476
SspMI	CTAG	2 cut(s)	119, 264
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	494
TaqI	TCGA	3 cut(s)	234, 257, 380
TasI	AATT	3 cut(s)	167, 201, 328
TfiI	GAWTC	2 cut(s)	22, 254
Tru1I	TTAA	2 cut(s)	279, 465
Tru9I	TTAA	2 cut(s)	279, 465
TscAI	CASTG	2 cut(s)	61, 222
TseFI	GTSAC	3 cut(s)	32, 545, 580
Tsp45I	GTSAC	3 cut(s)	32, 545, 580
TspDTI	ATGAA	1 cut(s)	120
TspRI	CASTG	2 cut(s)	61, 222
Tth111I	GACNNNGTC	1 cut(s)	551
XapI	RAATTY	2 cut(s)	167, 328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XspI	CTAG	2 cut(s)	119, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.