Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004317

Physical Location & Seq

Genomic Coordinates Forward (+)

11080851 .. 11084228

Gene Structure 3378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG061800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGGCAAACACTGAAAAACCAGAAATGGAGATGGTTTCACAAGATGATCATGAAGAAAGAGCAGACACTGAAAGAAAAAGACAGAGAATGTATAGTGATCAACCTCCTGCTACTGGGTGGAGATCATGTGCAGTGACCACGCTGAGTAGAGATGGTAGTGATTTGACAGCTACAACCATTGGTAAAGCACGTTGGCAGGAACTTGACCATGTTGTCGAAGAAATGGAGAAAATTGTTGTTGTCAATCTTCAGCACCGATCAATATCTCATTGGAAATGTGTAGAAATCATCACTAATATTAGAGCTTTTGCCAATCTGGGTAGTGACGATGAGGAGGGGTTCGTCAGTGGGGAGGAGGATTTTGATCCTGTTTTGGATAAGGCGTTTGTCAGAGATGAACAACAAACCCTAGCTCCGGCAGAAGGGGAAGTAGTAGATAATAGCACCAGCGTTGTCAAATTTGTTAGTTCTTTCAAGTTTTTTCTGAGGCCAATTGCCAAGGTTTCAGTGGATGATGATGATGTCGAAGAAGAAGAAGAAGAAGATTCGAAAGCTAGTATGGAAGTGTTTAAGGAGTCTGTTGGGGTGGGTGAGAGTTCTGAGGTGAAGAAGGGTTTGAATTCCGGTGGTTTGGCAAAAGAGAATGGTGTTGGTGGTGAAGTAGAGAAGTCGAAAGTTGCGAAGGGTTTAGGCTATGTTTCTGTGGCTGAGATAGATGATAAGAAGGTTGTAGAGCCTAAGGAGAGTGAGGTTGTTAATGGTACGGCGGATGCTGTGAGGGACAGTAGTGAGAATGGCTTGGTTGAAGAGCATGGTGTGCAGTTTACTGGTGGAGGTGACTTAGTCGTGGAAGCTGTCCATGTTGATTTTGTCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0007186 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043021 GO:0043024 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0060089 GO:0061927 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

293

Amino Acids

32.09

Weight (kDa)

4.47

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02482 AT4G02510 AT4G02510 AT4G02510 AT4G02510
fragaria_vesca	FvH4_2g25480
malus_domestica	MD03G1285700.v1.1 MD11G1305100.v1.1
prunus_persica	Prupe.8G258800_v2.0.a1 Prupe.8G258800_v2.0.a1
pyrus_communis	pycom03g22640 pycom11g26690
rosa_chinensis	RchiOBHm_Chr6g0293691
rosa_laevigata	RLG00000011932
rosa_multiflora	Rmu_co8307375.1_g000001 Rmu_co8497971.1_g000001 Rmu_sc0005431.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173980
rosa_rugosa	Rorug06G0237500 Rorug06G0237500
rosa_samantha	Rh4AG062400 Rh4AG063400 Rh4AG067300 Rh4BG061800 Rh4CG068100 Rh4DG056700 Rh6AG350100 Rh6BG357600 Rh6CG364400 Rh6DG351300
rosa_wichuraiana	Rw0G022990 Rw6G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AciI	CCGC	2 cut(s)	5, 770
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	2 cut(s)	461, 622
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	766
AfiI	CCNNNNNNNGG	3 cut(s)	116, 418, 425
AgsI	TTSAA	3 cut(s)	478, 622, 809
AluBI	AGCT	5 cut(s)	173, 308, 416, 557, 857
AluI	AGCT	5 cut(s)	173, 308, 416, 557, 857
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	491
ApoI	RAATTY	2 cut(s)	461, 622
AsuHPI	GGTGA	4 cut(s)	605, 619, 671, 851
AsuII	TTCGAA	1 cut(s)	551
AxyI	CCTNAGG	1 cut(s)	741
BccI	CCATC	2 cut(s)	28, 149
BceAI	ACGGC	1 cut(s)	783
BclI	TGATCA	2 cut(s)	49, 100
BfaI	CTAG	2 cut(s)	413, 558
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	763
BmuI	ACTGGG	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	551
BsaBI	GATNNNNATC	2 cut(s)	265, 366
BsaJI	CCNNGG	1 cut(s)	501
BsaWI	WCCGGW	1 cut(s)	626
BsaXI	ACNNNNNCTCC	4 cut(s)	115, 145, 400, 430
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 418, 425
Bse1I	ACTGG	2 cut(s)	121, 835
Bse21I	CCTNAGG	1 cut(s)	741
Bse8I	GATNNNNATC	2 cut(s)	265, 366
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	2 cut(s)	520, 778
BseJI	GATNNNNATC	2 cut(s)	265, 366
BseLI	CCNNNNNNNGG	3 cut(s)	116, 418, 425
BseMII	CTCAG	4 cut(s)	137, 479, 594, 702
BseNI	ACTGG	2 cut(s)	121, 835
BseRI	GAGGAG	2 cut(s)	350, 371
BsgI	GTGCAG	2 cut(s)	153, 842
BshFI	GGCC	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	419, 627
BslFI	GGGAC	1 cut(s)	797
BslI	CCNNNNNNNGG	3 cut(s)	116, 418, 425
BsmFI	GGGAC	1 cut(s)	797
BsnI	GGCC	1 cut(s)	493
Bsp119I	TTCGAA	1 cut(s)	551
Bsp143I	GATC	5 cut(s)	49, 100, 125, 260, 367
BspACI	CCGC	2 cut(s)	5, 770
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	4 cut(s)	138, 480, 595, 703
BspHI	TCATGA	1 cut(s)	52
BspPI	GGATC	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	804
BspT104I	TTCGAA	1 cut(s)	551
BsrI	ACTGG	2 cut(s)	121, 835
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	5 cut(s)	49, 100, 125, 260, 367
BssT1I	CCWWGG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	788
Bst6I	CTCTTC	1 cut(s)	804
BstAPI	GCANNNNNTGC	1 cut(s)	820
BstBI	TTCGAA	1 cut(s)	551
BstDEI	CTNAG	6 cut(s)	146, 488, 603, 711, 741, 844
BstF5I	GGATG	2 cut(s)	520, 778
BstKTI	GATC	5 cut(s)	52, 103, 128, 263, 370
BstMBI	GATC	5 cut(s)	49, 100, 125, 260, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	820
Bsu36I	CCTNAGG	1 cut(s)	741
BsuRI	GGCC	1 cut(s)	493
BtsCI	GGATG	2 cut(s)	520, 778
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	5 cut(s)	12, 69, 141, 355, 516
CaiI	CAGNNNCTG	1 cut(s)	71
CciI	TCATGA	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	765
CviAII	CATG	5 cut(s)	53, 129, 212, 815, 863
CviQI	GTAC	1 cut(s)	765
DdeI	CTNAG	6 cut(s)	146, 488, 603, 711, 741, 844
DpnI	GATC	5 cut(s)	51, 102, 127, 262, 369
DpnII	GATC	5 cut(s)	49, 100, 125, 260, 367
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
EciI	GGCGGA	1 cut(s)	785
Eco130I	CCWWGG	1 cut(s)	501
Eco57I	CTGAAG	1 cut(s)	236
Eco81I	CCTNAGG	1 cut(s)	741
EcoRI	GAATTC	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	5 cut(s)	56, 132, 215, 818, 866
FaiI	YATR	9 cut(s)	54, 96, 130, 213, 563, 699, 816, 864, 880
FaqI	GGGAC	1 cut(s)	797
FatI	CATG	5 cut(s)	52, 128, 211, 814, 862
FbaI	TGATCA	2 cut(s)	49, 100
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	527, 785
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	413, 558
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	493
HapII	CCGG	2 cut(s)	419, 627
Hin1II	CATG	5 cut(s)	56, 132, 215, 818, 866
HinfI	GANTC	2 cut(s)	548, 578
HpaII	CCGG	2 cut(s)	419, 627
HphI	GGTGA	4 cut(s)	605, 619, 671, 851
Hpy166II	GTNNAC	1 cut(s)	828
Hpy188I	TCNGA	3 cut(s)	395, 489, 604
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	828
HpyAV	CCTTC	4 cut(s)	419, 607, 679, 721
HpyCH4III	ACNGT	1 cut(s)	788
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	2 cut(s)	134, 823
HpyF10VI	GCNNNNNNNGC	1 cut(s)	820
HpyF3I	CTNAG	6 cut(s)	146, 488, 603, 711, 741, 844
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	5 cut(s)	56, 132, 215, 818, 866
Ksp22I	TGATCA	2 cut(s)	49, 100
Kzo9I	GATC	5 cut(s)	49, 100, 125, 260, 367
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	1 cut(s)	421
LweI	GCATC	1 cut(s)	763
MaeI	CTAG	2 cut(s)	413, 558
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	4 cut(s)	136, 326, 839, 874
MalI	GATC	5 cut(s)	51, 102, 127, 262, 369
MboI	GATC	5 cut(s)	49, 100, 125, 260, 367
MfeI	CAATTG	1 cut(s)	495
MluCI	AATT	4 cut(s)	234, 461, 495, 622
MlyI	GAGTC	1 cut(s)	587
MseI	TTAA	2 cut(s)	573, 759
MspI	CCGG	2 cut(s)	419, 627
MunI	CAATTG	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	820
NdeII	GATC	5 cut(s)	49, 100, 125, 260, 367
NlaIII	CATG	5 cut(s)	56, 132, 215, 818, 866
NmuCI	GTSAC	4 cut(s)	136, 326, 839, 874
NspV	TTCGAA	1 cut(s)	551
PagI	TCATGA	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	804
PcsI	WCGNNNNNNNCGW	1 cut(s)	680
PfeI	GAWTC	1 cut(s)	548
PflFI	GACNNNGTC	1 cut(s)	845
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
PstNI	CAGNNNCTG	1 cut(s)	71
PsyI	GACNNNGTC	1 cut(s)	845
RsaI	GTAC	1 cut(s)	766
RsaNI	GTAC	1 cut(s)	765
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	2 cut(s)	573, 759
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	5 cut(s)	49, 100, 125, 260, 367
SchI	GAGTC	1 cut(s)	587
SfaNI	GCATC	1 cut(s)	763
SfuI	TTCGAA	1 cut(s)	551
Sse9I	AATT	4 cut(s)	234, 461, 495, 622
SsiI	CCGC	2 cut(s)	5, 770
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	2 cut(s)	413, 558
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	788
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	4 cut(s)	219, 528, 551, 674
TasI	AATT	4 cut(s)	234, 461, 495, 622
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	2 cut(s)	573, 759
Tru9I	TTAA	2 cut(s)	573, 759
TscAI	CASTG	5 cut(s)	19, 76, 141, 355, 516
TseFI	GTSAC	4 cut(s)	136, 326, 839, 874
Tsp45I	GTSAC	4 cut(s)	136, 326, 839, 874
TspDTI	ATGAA	2 cut(s)	69, 414
TspRI	CASTG	5 cut(s)	19, 76, 141, 355, 516
Tth111I	GACNNNGTC	1 cut(s)	845
XapI	RAATTY	2 cut(s)	461, 622
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XspI	CTAG	2 cut(s)	413, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.