Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01067

Orthogroup ID

OG0004317

Physical Location & Seq

Genomic Coordinates Reverse (-)

63612 .. 64541

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G022990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGACTCCTCCAAGCTCTCCACTCCACAACTCCCTCTACACTCATCAGCTTCTTCTTCTTCCTCTGCTTCTTCCGACTCTGAAATTGATGTTAATTTAGCCAAAACCACTGTTTTGAAAATTGATATCGATGAAACTAGTTACGGTGGTGTTGGTGTTTGGCCAAGTCTGGGTAGTGACAATGAGGAGGGGTTCGTCAGTGGGGAGGAGGATTTCGATCCTGTTTTGGATAAGGCGTTTGTCAGAGATGAACAACAAACCCTAGCTCCGGCGGAAGGGGAAGTAGTAGATAATAGCACCAGCGCTGTCAAATTTGTTAGTTCTTTCAAGTTTTTTCTGAGGCCAATTGCCAAGGTTTCGGTGGATGATGATGATGCCGAAGAAGAAGAAGAAGATTTGAAATCTAGTATGGAAGTGTTTAAGGAGTCTGTTGGGGTGGGTGAGAGTTCTGAGGTGAAGAAGAATGGTGTTGGTGGTGAAGTAGAGAAGTCGAAAGTTGCGGAGGGTTTAAGCTATGTTTCTGTGGCTGAGATAGATGATAAGAAGGTTGTAGAGCCTAAGGAGAGTGAGGTTGTTAATGGTACCGTGGAAGCTGTGAGGGACAGTAGTGAGAATGGCTTGGTTGAAGAGCATGGTGTGCAGTTTACTAGTGGAGGAGCAGCTGTTGTTGGTGATGTGGAGAAGATTGATGAGTCTGAGATAAAAGGGTTGGAGGTTCCGGTAGGGGTGAGCTTAGATAATGAGTTTGATCAAATTAGCTGGGAGGGTGAAAAGCCGAAAGGTTTAAAGTTGGTGGCTGTGGAGTCTAAGTCTAAACGAGTGGTTGTTGCTGAACCAGCAGTTGACGGAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0007186 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043021 GO:0043024 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0060089 GO:0061927 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

284

Amino Acids

30.14

Weight (kDa)

4.24

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02482 AT4G02510 AT4G02510 AT4G02510 AT4G02510
fragaria_vesca	FvH4_2g25480
malus_domestica	MD03G1285700.v1.1 MD11G1305100.v1.1
prunus_persica	Prupe.8G258800_v2.0.a1 Prupe.8G258800_v2.0.a1
pyrus_communis	pycom03g22640 pycom11g26690
rosa_chinensis	RchiOBHm_Chr6g0293691
rosa_laevigata	RLG00000011932
rosa_multiflora	Rmu_co8307375.1_g000001 Rmu_co8497971.1_g000001 Rmu_sc0005431.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173980
rosa_rugosa	Rorug06G0237500 Rorug06G0237500
rosa_samantha	Rh4AG062400 Rh4AG063400 Rh4AG067300 Rh4BG061800 Rh4CG068100 Rh4DG056700 Rh6AG350100 Rh6BG357600 Rh6CG364400 Rh6DG351300
rosa_wichuraiana	Rw0G022990 Rw6G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	581
AccB1I	GGYRCC	1 cut(s)	581
AciI	CCGC	2 cut(s)	272, 500
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	311
AfaI	GTAC	1 cut(s)	583
AfeI	AGCGCT	1 cut(s)	304
AfiI	CCNNNNNNNGG	3 cut(s)	170, 268, 275
AgsI	TTSAA	4 cut(s)	118, 328, 400, 626
AhlI	ACTAGT	2 cut(s)	137, 647
AluBI	AGCT	8 cut(s)	16, 50, 266, 513, 593, 662, 732, 759
AluI	AGCT	8 cut(s)	16, 50, 266, 513, 593, 662, 732, 759
AlwI	GGATC	1 cut(s)	212
Aor51HI	AGCGCT	1 cut(s)	304
AoxI	GGCC	2 cut(s)	161, 341
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	1 cut(s)	311
Asp718I	GGTACC	1 cut(s)	581
AspLEI	GCGC	1 cut(s)	305
AsuHPI	GGTGA	6 cut(s)	452, 466, 488, 683, 739, 779
AxyI	CCTNAGG	1 cut(s)	558
BalI	TGGCCA	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	581
BbvI	GCAGC	1 cut(s)	671
BclI	TGATCA	1 cut(s)	748
BcuI	ACTAGT	2 cut(s)	137, 647
BfaI	CTAG	4 cut(s)	138, 263, 405, 648
BfoI	RGCGCY	1 cut(s)	306
BisI	GCNGC	1 cut(s)	660
BlsI	GCNGC	1 cut(s)	661
BmiI	GGNNCC	2 cut(s)	583, 717
BmsI	GCATC	1 cut(s)	364
Bsa29I	ATCGAT	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	351, 585
BsaWI	WCCGGW	1 cut(s)	718
BsaXI	ACNNNNNCTCC	6 cut(s)	250, 280, 648, 678, 794, 824
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 268, 275
Bse21I	CCTNAGG	1 cut(s)	558
Bse8I	GATNNNNATC	1 cut(s)	216
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	351, 585
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	3 cut(s)	170, 268, 275
BseMII	CTCAG	4 cut(s)	329, 441, 519, 687
BseRI	GAGGAG	3 cut(s)	200, 221, 669
BseXI	GCAGC	1 cut(s)	671
BseYI	CCCAGC	1 cut(s)	759
BsgI	GTGCAG	1 cut(s)	659
BshFI	GGCC	2 cut(s)	163, 343
BshNI	GGYRCC	1 cut(s)	581
BshVI	ATCGAT	1 cut(s)	129
BsiSI	CCGG	2 cut(s)	269, 719
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	3 cut(s)	170, 268, 275
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	2 cut(s)	163, 343
Bsp143I	GATC	2 cut(s)	217, 748
BspACI	CCGC	2 cut(s)	272, 500
BspANI	GGCC	2 cut(s)	163, 343
BspCNI	CTCAG	4 cut(s)	330, 442, 520, 688
BspDI	ATCGAT	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	583, 717
BspPI	GGATC	1 cut(s)	212
BspQI	GCTCTTC	1 cut(s)	621
BspT107I	GGYRCC	1 cut(s)	581
BssECI	CCNNGG	2 cut(s)	351, 585
BssMI	GATC	2 cut(s)	217, 748
BssT1I	CCWWGG	1 cut(s)	351
Bst4CI	ACNGT	4 cut(s)	112, 146, 586, 605
Bst6I	CTCTTC	1 cut(s)	621
BstAPI	GCANNNNNTGC	1 cut(s)	637
BstDEI	CTNAG	7 cut(s)	338, 450, 528, 558, 696, 733, 807
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	370
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	2 cut(s)	220, 751
BstMBI	GATC	2 cut(s)	217, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	637, 836
BstV1I	GCAGC	1 cut(s)	671
Bsu15I	ATCGAT	1 cut(s)	129
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	163, 343
BsuTUI	ATCGAT	1 cut(s)	129
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	370
BtsIMutI	CAGTG	2 cut(s)	108, 205
CfoI	GCGC	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	582
CviAII	CATG	1 cut(s)	632
CviQI	GTAC	1 cut(s)	582
DdeI	CTNAG	7 cut(s)	338, 450, 528, 558, 696, 733, 807
DpnI	GATC	2 cut(s)	219, 750
DpnII	GATC	2 cut(s)	217, 748
DraI	TTTAAA	1 cut(s)	786
EaeI	YGGCCR	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
EciI	GGCGGA	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	351
Eco32I	GATATC	1 cut(s)	127
Eco47III	AGCGCT	1 cut(s)	304
Eco81I	CCTNAGG	1 cut(s)	558
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	1 cut(s)	635
FaiI	YATR	3 cut(s)	410, 516, 633
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	1 cut(s)	631
FbaI	TGATCA	1 cut(s)	748
Fnu4HI	GCNGC	1 cut(s)	660
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	660
FspBI	CTAG	4 cut(s)	138, 263, 405, 648
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	660
GsaI	CCCAGC	1 cut(s)	763
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	163, 343
HapII	CCGG	2 cut(s)	269, 719
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	1 cut(s)	635
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	844
HindII	GTYRAC	1 cut(s)	844
HinfI	GANTC	6 cut(s)	5, 77, 425, 692, 803, 849
HpaII	CCGG	2 cut(s)	269, 719
HphI	GGTGA	6 cut(s)	452, 466, 488, 683, 739, 779
Hpy166II	GTNNAC	2 cut(s)	645, 844
Hpy188I	TCNGA	6 cut(s)	76, 82, 245, 339, 451, 697
Hpy8I	GTNNAC	2 cut(s)	645, 844
HpyAV	CCTTC	2 cut(s)	269, 538
HpyCH4III	ACNGT	4 cut(s)	112, 146, 586, 605
HpyCH4V	TGCA	1 cut(s)	640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	637, 836
HpyF3I	CTNAG	7 cut(s)	338, 450, 528, 558, 696, 733, 807
Hsp92II	CATG	1 cut(s)	635
HspAI	GCGC	1 cut(s)	303
KpnI	GGTACC	1 cut(s)	585
Ksp22I	TGATCA	1 cut(s)	748
Kzo9I	GATC	2 cut(s)	217, 748
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	2 cut(s)	271, 656
LpnPI	CCDG	7 cut(s)	155, 234, 282, 313, 732, 745, 849
Lsp1109I	GCAGC	1 cut(s)	671
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	4 cut(s)	138, 263, 405, 648
MaeIII	GTNAC	2 cut(s)	140, 176
MalI	GATC	2 cut(s)	219, 750
MboI	GATC	2 cut(s)	217, 748
MfeI	CAATTG	1 cut(s)	345
MlsI	TGGCCA	1 cut(s)	163
MluCI	AATT	6 cut(s)	84, 94, 120, 311, 345, 753
MluNI	TGGCCA	1 cut(s)	163
MlyI	GAGTC	4 cut(s)	71, 434, 701, 812
MmeI	TCCRAC	2 cut(s)	99, 690
Mox20I	TGGCCA	1 cut(s)	163
MscI	TGGCCA	1 cut(s)	163
MseI	TTAA	5 cut(s)	93, 420, 509, 576, 785
Msp20I	TGGCCA	1 cut(s)	163
MspA1I	CMGCKG	1 cut(s)	662
MspI	CCGG	2 cut(s)	269, 719
MunI	CAATTG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	637, 836
NdeII	GATC	2 cut(s)	217, 748
NlaIII	CATG	1 cut(s)	635
NlaIV	GGNNCC	2 cut(s)	583, 717
NmuCI	GTSAC	1 cut(s)	176
PciSI	GCTCTTC	1 cut(s)	621
PflFI	GACNNNGTC	1 cut(s)	848
PkrI	GCNGC	1 cut(s)	661
PleI	GAGTC	4 cut(s)	71, 433, 700, 811
PpsI	GAGTC	4 cut(s)	71, 433, 700, 811
PspFI	CCCAGC	1 cut(s)	759
PspN4I	GGNNCC	2 cut(s)	583, 717
PsyI	GACNNNGTC	1 cut(s)	848
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	1 cut(s)	583
RsaNI	GTAC	1 cut(s)	582
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	5 cut(s)	93, 420, 509, 576, 785
SatI	GCNGC	1 cut(s)	660
Sau3AI	GATC	2 cut(s)	217, 748
SchI	GAGTC	4 cut(s)	71, 434, 701, 812
SfaNI	GCATC	1 cut(s)	364
SpeI	ACTAGT	2 cut(s)	137, 647
Sse9I	AATT	6 cut(s)	84, 94, 120, 311, 345, 753
SsiI	CCGC	2 cut(s)	272, 500
SspMI	CTAG	4 cut(s)	138, 263, 405, 648
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	4 cut(s)	112, 146, 586, 605
TaqI	TCGA	3 cut(s)	129, 216, 491
TasI	AATT	6 cut(s)	84, 94, 120, 311, 345, 753
Tru1I	TTAA	5 cut(s)	93, 420, 509, 576, 785
Tru9I	TTAA	5 cut(s)	93, 420, 509, 576, 785
TscAI	CASTG	2 cut(s)	115, 205
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	1 cut(s)	659
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	147, 264
TspRI	CASTG	2 cut(s)	115, 205
Tth111I	GACNNNGTC	1 cut(s)	848
XapI	RAATTY	1 cut(s)	311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XspI	CTAG	4 cut(s)	138, 263, 405, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.