Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004317

Physical Location & Seq

Genomic Coordinates Forward (+)

13877848 .. 13882314

Gene Structure 4467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011932

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4329 bp

ATGGACTCCTCCAAGCTCCCCGCTCCACAACTCCCTCTGCACTCATCAGGTCTGGGTAGTGACGGTGAGGAGGGGTTCGTCAGTGGGGAGGAGGATTTGGATCCTGGTTTGGATAGGGCGTTTGTCAGAGACGAACAACAAACCCTAGCTCCGGCGGAAGGGGAATTAGTAGATAACAGCAGCAGCGCTGTCAAATTTGTTAGTTCTTCCGAGTTTTTTCTGAGGCCGATTGCCAAGGTCTCCGTGGATGATGATGACGGCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGATTCGAAAGCCGGTATGGAGGTGTTTAAGGAGTCTGTTGGGGTGGGTGAGAGTTCTGAGGTGGAGAAGGGTTTGAATTCCGGTGAGTTGGTGAAAGAGAATGGTGTTGGTGGTGAAGTAGGGAAGTCGAAGGTTGCGGAGGGTTTAGGCTCTGTTTCCGTGGCTGAGATAGAGGATAAGAAGGTTGTAGAGCCTAAGGAGATCGAGGTTGTTAATGGTACCGCAGAAGCTGTGAGGGAGAGTAGTGAGAATGGCTTGGTTGAAGAACACGGTGTGCAGTTTACTGGTGGAAGTGACTCAGTTGTGCAAGCTGTGCATGTTGATTTGTCACACACAGAAGCAGCTGTTGTTGGCGATGTGGAGAAGATTGAGGAGTCTGAGATAAAAGGGTTGGAGGTTCCGGTAGGGGTGAGCTTGGATAATGAGTTTGGTCAAATTAGCCGTGAGGTTGAAGAGCCAAAAGATTCAGAGTTGGTTGCTGTGGAGTCTAAGTCTGATGGAGTGGTTGTTACTGAACCAGCAGTTGATAAGTTGGTTGAAGAACATGGTGTTGATATCATTAGTGAAGGTGACTCAGCTGTGGAAGCTGTCCGTGTTGATTTTTCACAAACAGGAGCAGCTGTTGTTGGTGATGTGGAGAAGATTGAAGAATCTGCAATTAAGGGGTTGGAGGTTCCAGCAGGAGTAAGCTTGGAGAATGGATTTGATCAAATTGGCCGTGATTCTGAATTGCCATATGATTCAAAGTTGGTGGATGTGAACTCTGAGTCTGAAAAAGCGGCTGTTGCGGACCCAGCAGATGATAAGTTCGTTGAAGAACATGGTATGGATTTTACTAGCAAGGGCGATTCAGTTGTGCAAGCTGTCGATGTTGATTTGTCACAGACAGGAGCAGCTGTTGTTGGTGATGTGGAGAAGATTGAGGAATCTGAAATTAAGGTTCCAGTAGGCACGAGCTTGGAGAATGGATTTGATCAAATTAGCCGTGATGTTGAATTGCAGTCCGAGTCTGACAAAGTGGTTGTTGCTGAGTCGGGGAACGTGGAGCAGAAAACTGTTGCTGCTGCTGCTGCTGAGGAAGTAGATTTCCAGGAGAGAGAGGAGAAAGAACTTGAACTGAAGTCCAATGCTGCAACTGGACAGGAAGGCCCCACAATGGAGATAGGTGCTTCTGAAGTAAAAGTAGTGCCAGATGAAACCCAGTCTGTGAACCATGTTTCTGATTTTAGTGTACTGAATGCACCCGAGAGTGCTGAAAAGAGTGCAACTGACCAAGAAATAAAATTAGAGGAGGAAGAGGAGAAGCACTCTCTTGATGAAAGTGGCATTGAATCTTTAGAACCAAGTTCCATTTCACATCAAGAGATAAGGGTTGAAGCTGAAGATGATGACGAAGATGATGACGATAAGGACGATGAAGGGGAAAATGATGGTATGATATTTGGGAGCTCTGCAGCTGCCAAACAATTCTTGGAAGAGTTGGAACGGGAATCAGGTACTGGTTCTTACTCAGGTGCAGAGAGTTACGGTGACCGTTCTCTGAGTTATCGTGATGATTCTCAGAGAGTTGATGGGCAGATTGTGACAGACTCAGATGAAGAAGTGGACACTGATGAAGAAGGGGGTGGTAAAGAGTTATTTGATTCTGCTGCATTGGCAGCTCTTCTGAAAGCAGCAACAGGTGGCGCTGCGTCAGATGGTGGCAGTGTCACATTTACCTCCCCAGATGGATCCAGGCTTTTCTCTGTCGAGCGTCCTGCTGGTTTGGGATCCTCAATGCGGCCTATGAAACCTGGTACACGCCCAAACCCTTCTACTCTATTTTCCAATGCTACAGTTGGGGGAGATACTGACAACAGCTTGAGTGAAGAAGAGAAAAAGAAACTGGAAAAATTTCAGCAGATAAGGGTTAAGTTCTTGAGGCTTGTTCAGAGATTAGGTGTATCTACAGAAGATTCAATAGCCAAGCAGGTTCTATACCGCCTAGCTCTTGTTTCAGGAAGGCAAAATAGTCGTGAGTTTAGCCTTGAAGCTGCAAAGACAACAGCTCTTGAGCTTGAAGCAGATGGGAAAGACGATCTTGACTTTTCCTTGAACATACTGGTTCTTGGGAAAACAGGTGTGGGGAAGAGTGCTACGATTAATTCTATTTTTGGTGAAGAAAAGACTCCAATTTATGCCTTTGGACCAGCAACAACCACTGTGAAAGAAATTGTTGGAGTGGTGGATGGAATCAAGATTAGGGTTTTTGATACACCAGGTCTTAAATCTGCTGCAATGGAACAAAATGTAAACCGCAAAATTTTATCTTCTGTGCAGAAGTTCACGAAAAAATGCCCCCCAGATATTGTCCTCTATGTGGATCGGTTGGACACCCAAAGTAGGGATCTAAATGATGTGCCAGTATTAAGATCAATTACTAGTGCTTTTGGCCCTTCAATTTGGCGAAGTACTATAGTCACTCTAACCCATGCTGCTTCTGCTCCTCCTGATGGACCATCAGGCTCTCCTCTGAATTATGAGTTGTTTGTTGCTCAGAGGTCTCAGATCCTCCAGCAGACCATTGGACAAGCTATTGGGGATATAAGGTTTACAAATCCAAATATGATGAGTCCTATATCTCTTGTAGAGAACCATCCCTCCTGTCGAAAGAATAGAGAAGGTCAGAAAGTGCTCCCTAATGGTCAAAGCTGGAGACCTCAGCTATTGCTCTTGAGCTCTTCTATGAAGGTCTTAGCTGAGGCAACTAATCTCTCAAAGCCTGCAGAACCATTTGATCACCGAAAACTATTTGGTTTCCGCACCCGTTCTGCTCCTCTTCCATACTTGTTGTCTTGGCTGCTGCAGTCTCGTACCCATCCAAAGCTCTCTGGTGATCAAGGTGGTGAGAATGCTGACTCAGATATCGACTTGGCTGACTTGTCCGATTCTGATAATGAGGAAGAGGAGGATGAGTATGATCAGCTTCCATCATTCAAGCCTCTCAAGAAATCTCAGATTGCTAAGCTTAGCAAAGAGCAGAAGAAGGCGTACCTTGAAGAGTACGATTACAGGGTTAAGCTCCTCCAGAAGAAGATGTGGAGAGAAGAGTTGAAAAGGATGAAAGAAATGAAGAAGGGTAATAAGGCTAGTGCAGACGAGTATGGTTATCTGGGTGAAGAAGATCCGGAAAATGCTGGTCCAGCAGCTGTGCCAGTTGCATTACCTGATATGGTTCTGCCACCTTCGTTTGATAGTGAAAATCCAGCTTACAGGTACCGCTTCTTGGAGCCAACTTCTCAGTTCTTGGCTAGGCCAGTATTGGATGCCCAAGGTTGGGACCATGACTGTGGGTATGATGGTGTCAATCTTGAATACAGTCAAGCCATTGTTAATACTTTTCCAGCTACTGTTGCTGTTCAAGTTACAAAGGACAAGAAGGAGTTTAATCTCCATTTGGATTCTTCAGTTGCTGCTAAGCATGGGGAGAATGGATCAAGTATGGCAGGTTTTGACATTCAAAACATTGGAAAGCAACTTGCTTACATTGTCAGAGGAGAGACCAAATGGAAAAATTTGAAGAAGAACAAGACTACTGCTGGAGTATCCATGACATTTTTAGGTGAAAATGTATCCACTGGAGTCAAAATTGAGGATCAGATTGCCGTTGGCAAGCGCCTGGTATTTGTGGGTAGTGCTGGAACTGTCAGATCTCAGGGTGACTCGGCATATGGAGCCAATGTAGAGGTGCGGTTGAGGGAAGCAGATTTTCCAATTGGCCAGGATCAATCATCATTGGGTCTGTCTCTGGTGAAGTGGAGGGGTGACTTGGCCCTGGGGGCAAATCTTCAGTCCCAGTTTTCCCTTGGACGAGACTACAAGATAGCTGTTCGTGCAGGATTGAACAACAAGCGCAGCGGACAGATCTCGATTAGAACAAGCAGCTCTGAACAACTTCAAATTGCACTTGTGGCTGTCATTCCAATCGTAAGATCCATCTACAATCTGATCTTCCCTGGAGCTTCACTCAGTGAGAATTACTCAATCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0007186 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043021 GO:0043024 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0060089 GO:0061927 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

1443

Amino Acids

155.93

Weight (kDa)

4.49

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIG1	PF04548	797 - 944	4e-21	AIG1 family
MMR_HSR1	PF01926	799 - 887	2.9e-09	50S ribosome-binding GTPase
TOC159_MAD	PF11886	1163 - 1427	3.8e-128	Translocase of chloroplast 159/132, membrane anchor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02482 AT4G02510 AT4G02510 AT4G02510 AT4G02510
fragaria_vesca	FvH4_2g25480
malus_domestica	MD03G1285700.v1.1 MD11G1305100.v1.1
prunus_persica	Prupe.8G258800_v2.0.a1 Prupe.8G258800_v2.0.a1
pyrus_communis	pycom03g22640 pycom11g26690
rosa_chinensis	RchiOBHm_Chr6g0293691
rosa_laevigata	RLG00000011932
rosa_multiflora	Rmu_co8307375.1_g000001 Rmu_co8497971.1_g000001 Rmu_sc0005431.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173980
rosa_rugosa	Rorug06G0237500 Rorug06G0237500
rosa_samantha	Rh4AG062400 Rh4AG063400 Rh4AG067300 Rh4BG061800 Rh4CG068100 Rh4DG056700 Rh6AG350100 Rh6BG357600 Rh6CG364400 Rh6DG351300
rosa_wichuraiana	Rw0G022990 Rw6G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	2257, 3773
Acc65I	GGTACC	2 cut(s)	515, 3552
AccB1I	GGYRCC	2 cut(s)	515, 3552
AccBSI	CCGCTC	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	3463
AcoI	YGGCCR	2 cut(s)	1012, 4054
AcsI	RAATTY	5 cut(s)	194, 373, 2189, 2598, 3850
AcuI	CTGAAG	5 cut(s)	1436, 1491, 1698, 3726, 4109
AdeI	CACNNNGTG	2 cut(s)	571, 4307
AfaI	GTAC	9 cut(s)	517, 1530, 1795, 2095, 2749, 3151, 3329, 3341, 3554
AfeI	AGCGCT	1 cut(s)	187
AhlI	ACTAGT	1 cut(s)	2717
AjnI	CCWGG	9 cut(s)	103, 1386, 2030, 2089, 2554, 3954, 4056, 4110, 4291
AjuI	GAANNNNNNNTTGG	2 cut(s)	1633, 1665
AloI	GAACNNNNNNTCC	2 cut(s)	2921, 2953
Alw21I	GWGCWC	3 cut(s)	1748, 2973, 3017
Alw26I	GTCTC	8 cut(s)	123, 244, 2844, 2986, 3150, 3830, 4086, 4143
AlwNI	CAGNNNCTG	5 cut(s)	527, 1796, 3485, 3686, 3749
Ama87I	CYCGRG	1 cut(s)	1541
Aor13HI	TCCGGA	1 cut(s)	3463
Aor51HI	AGCGCT	1 cut(s)	187
AoxI	GGCC	8 cut(s)	224, 1012, 1444, 2078, 2728, 3590, 4054, 4107
ApoI	RAATTY	5 cut(s)	194, 373, 2189, 2598, 3850
ArsI	GACNNNNNNTTYG	2 cut(s)	4112, 4144
AseI	ATTAAT	1 cut(s)	2439
Asp700I	GAANNNNTTC	2 cut(s)	2190, 4230
Asp718I	GGTACC	2 cut(s)	515, 3552
AspLEI	GCGC	4 cut(s)	188, 1985, 3954, 4191
AspS9I	GGNCC	8 cut(s)	1087, 1445, 2483, 2729, 2792, 3476, 3616, 4108
AsuII	TTCGAA	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	1541
AvaII	GGWCC	5 cut(s)	1087, 2483, 2792, 3476, 3616
AxyI	CCTNAGG	1 cut(s)	492
BalI	TGGCCA	1 cut(s)	4056
BamHI	GGATCC	3 cut(s)	100, 2027, 2066
BanI	GGYRCC	2 cut(s)	515, 3552
BanII	GRGCYC	2 cut(s)	1748, 3017
BarI	GAAGNNNNNNTAC	2 cut(s)	3311, 3343
BauI	CACGAG	1 cut(s)	1249
Bbv12I	GWGCWC	3 cut(s)	1748, 2973, 3017
BbvCI	CCTCAGC	3 cut(s)	1371, 2997, 3036
BceAI	ACGGC	5 cut(s)	274, 723, 999, 1266, 3926
BcgI	CGANNNNNNTGC	4 cut(s)	2036, 2070, 2291, 2325
BciT130I	CCWGG	9 cut(s)	105, 1388, 2032, 2091, 2556, 3956, 4058, 4112, 4293
BciVI	GTATCC	2 cut(s)	3892, 3919
BclI	TGATCA	5 cut(s)	1003, 1270, 3073, 3172, 3256
BcoDI	GTCTC	8 cut(s)	123, 244, 2844, 2986, 3150, 3830, 4086, 4143
BcuI	ACTAGT	1 cut(s)	2717
BfaI	CTAG	7 cut(s)	146, 1134, 2282, 2718, 3426, 3588, 4327
BfmI	CTRYAG	6 cut(s)	1749, 2130, 2244, 2751, 3060, 3140
BfoI	RGCGCY	3 cut(s)	189, 1986, 3955
BfuAI	ACCTGC	2 cut(s)	2257, 3773
BfuI	GTATCC	2 cut(s)	3892, 3919
BglI	GCCNNNNNGGC	1 cut(s)	4115
BglII	AGATCT	2 cut(s)	3986, 4200
BlpI	GCTNAGC	3 cut(s)	3300, 3305, 3753
BmcAI	AGTACT	1 cut(s)	2749
Bme1390I	CCNGG	9 cut(s)	105, 1388, 2032, 2091, 2556, 3956, 4058, 4112, 4293
Bme18I	GGWCC	5 cut(s)	1087, 2483, 2792, 3476, 3616
BmeT110I	CYCGRG	1 cut(s)	1541
BmgT120I	GGNCC	8 cut(s)	1087, 1445, 2483, 2729, 2792, 3476, 3616, 4108
BmrFI	CCNGG	9 cut(s)	105, 1388, 2032, 2091, 2556, 3956, 4058, 4112, 4293
BmrI	ACTGGG	2 cut(s)	1492, 4126
BmsI	GCATC	1 cut(s)	3592
BmuI	ACTGGG	2 cut(s)	1492, 4126
BplI	GAGNNNNNCTC	5 cut(s)	1589, 1621, 4287, 4319, 4301
BpmI	CTGGAG	6 cut(s)	2834, 3010, 3347, 3897, 3936, 4314
Bpu10I	CCTNAGC	3 cut(s)	1371, 2997, 3036
Bpu1102I	GCTNAGC	3 cut(s)	3300, 3305, 3753
Bpu14I	TTCGAA	1 cut(s)	302
BpuEI	CTTGAG	5 cut(s)	2179, 2236, 2369, 3031, 3266
BsaBI	GATNNNNATC	1 cut(s)	99
BsaI	GGTCTC	4 cut(s)	244, 2844, 2986, 3830
BsaJI	CCNNGG	8 cut(s)	234, 243, 456, 3607, 4110, 4111, 4141, 4291
BsaWI	WCCGGW	3 cut(s)	377, 697, 3463
Bse118I	RCCGGY	1 cut(s)	308
Bse21I	CCTNAGG	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	2580
Bse8I	GATNNNNATC	1 cut(s)	99
BseAI	TCCGGA	1 cut(s)	3463
BseBI	CCWGG	9 cut(s)	105, 1388, 2032, 2091, 2556, 3956, 4058, 4112, 4293
BseDI	CCNNGG	8 cut(s)	234, 243, 456, 3607, 4110, 4111, 4141, 4291
BseGI	GGATG	8 cut(s)	253, 1057, 2530, 2932, 3154, 3253, 3402, 3607
BseJI	GATNNNNATC	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	2580
BseYI	CCCAGC	1 cut(s)	1090
BsgI	GTGCAG	6 cut(s)	23, 593, 1833, 2633, 3450, 4191
BshFI	GGCC	8 cut(s)	226, 1014, 1446, 2080, 2730, 3592, 4056, 4109
BshNI	GGYRCC	2 cut(s)	515, 3552
BsiHKAI	GWGCWC	3 cut(s)	1748, 2973, 3017
BsiHKCI	CYCGRG	1 cut(s)	1541
BsiSI	CCGG	5 cut(s)	152, 309, 378, 698, 3464
BslFI	GGGAC	2 cut(s)	3629, 4114
BsmAI	GTCTC	8 cut(s)	123, 244, 2844, 2986, 3150, 3830, 4086, 4143
BsmBI	CGTCTC	1 cut(s)	123
BsmFI	GGGAC	2 cut(s)	3629, 4114
BsmI	GAATGC	2 cut(s)	1540, 3193
BsnI	GGCC	8 cut(s)	226, 1014, 1446, 2080, 2730, 3592, 4056, 4109
Bso31I	GGTCTC	4 cut(s)	244, 2844, 2986, 3830
BsoBI	CYCGRG	1 cut(s)	1541
Bsp119I	TTCGAA	1 cut(s)	302
Bsp1286I	GDGCHC	3 cut(s)	1748, 2973, 3017
Bsp13I	TCCGGA	1 cut(s)	3463
Bsp1720I	GCTNAGC	3 cut(s)	3300, 3305, 3753
BspANI	GGCC	8 cut(s)	226, 1014, 1446, 2080, 2730, 3592, 4056, 4109
BspEI	TCCGGA	1 cut(s)	3463
BspMAI	CTGCAG	3 cut(s)	1753, 3064, 3144
BspMI	ACCTGC	2 cut(s)	2257, 3773
BspQI	GCTCTTC	3 cut(s)	744, 1965, 3022
BspT104I	TTCGAA	1 cut(s)	302
BspT107I	GGYRCC	2 cut(s)	515, 3552
BspTNI	GGTCTC	4 cut(s)	244, 2844, 2986, 3830
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	2580
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	8 cut(s)	234, 243, 456, 3607, 4110, 4111, 4141, 4291
BssSI	CACGAG	1 cut(s)	1249
BssT1I	CCWWGG	3 cut(s)	234, 3607, 4141
Bst2BI	CACGAG	1 cut(s)	1249
Bst2UI	CCWGG	9 cut(s)	105, 1388, 2032, 2091, 2556, 3956, 4058, 4112, 4293
BstAPI	GCANNNNNTGC	1 cut(s)	610
BstBI	TTCGAA	1 cut(s)	302
BstC8I	GCNNGC	4 cut(s)	606, 1158, 3060, 3950
BstDSI	CCRYGG	2 cut(s)	243, 456
BstEII	GGTNACC	1 cut(s)	1826
BstF5I	GGATG	8 cut(s)	253, 1057, 2530, 2932, 3154, 3253, 3402, 3607
BstH2I	RGCGCY	3 cut(s)	189, 1986, 3955
BstHHI	GCGC	4 cut(s)	188, 1985, 3954, 4191
BstMAI	GTCTC	8 cut(s)	123, 244, 2844, 2986, 3150, 3830, 4086, 4143
BstNI	CCWGG	9 cut(s)	105, 1388, 2032, 2091, 2556, 3956, 4058, 4112, 4293
BstNSI	RCATGY	1 cut(s)	617
BstPI	GGTNACC	1 cut(s)	1826
BstSCI	CCNGG	9 cut(s)	103, 1386, 2030, 2089, 2554, 3954, 4056, 4110, 4291
BstSFI	CTRYAG	6 cut(s)	1749, 2130, 2244, 2751, 3060, 3140
BstX2I	RGATCY	9 cut(s)	100, 2027, 2066, 2683, 2844, 3460, 3986, 4200, 4268
BstXI	CCANNNNNNTGG	1 cut(s)	3626
BstYI	RGATCY	9 cut(s)	100, 2027, 2066, 2683, 2844, 3460, 3986, 4200, 4268
Bsu36I	CCTNAGG	1 cut(s)	492
BsuI	GTATCC	2 cut(s)	3892, 3919
BsuRI	GGCC	8 cut(s)	226, 1014, 1446, 2080, 2730, 3592, 4056, 4109
BtgI	CCRYGG	2 cut(s)	243, 456
BtgZI	GCGATG	1 cut(s)	666
BtsCI	GGATG	8 cut(s)	253, 1057, 2530, 2932, 3154, 3253, 3402, 3607
BtsI	GCAGTG	1 cut(s)	2008
BtsIMutI	CAGTG	6 cut(s)	88, 1905, 2008, 2496, 3912, 4312
BveI	ACCTGC	2 cut(s)	2257, 3773
Cac8I	GCNNGC	4 cut(s)	606, 1158, 3060, 3950
CaiI	CAGNNNCTG	5 cut(s)	527, 1796, 3485, 3686, 3749
CfoI	GCGC	4 cut(s)	188, 1985, 3954, 4191
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	8 cut(s)	1087, 1445, 2483, 2729, 2792, 3476, 3616, 4108
CseI	GACGC	2 cut(s)	1977, 2039
CsiI	ACCWGGT	2 cut(s)	2089, 2554
Csp6I	GTAC	9 cut(s)	516, 1529, 1794, 2094, 2748, 3150, 3328, 3340, 3553
CspCI	CAANNNNNGTGG	2 cut(s)	1029, 1064
CviAII	CATG	8 cut(s)	614, 842, 1118, 1511, 2768, 3620, 3758, 3886
CviQI	GTAC	9 cut(s)	516, 1529, 1794, 2094, 2748, 3150, 3328, 3340, 3553
DraIII	CACNNNGTG	2 cut(s)	571, 4307
EaeI	YGGCCR	2 cut(s)	1012, 4054
EciI	GGCGGA	1 cut(s)	170
Ecl136II	GAGCTC	2 cut(s)	1746, 3015
Eco130I	CCWWGG	3 cut(s)	234, 3607, 4141
Eco24I	GRGCYC	2 cut(s)	1748, 3017
Eco31I	GGTCTC	4 cut(s)	244, 2844, 2986, 3830
Eco32I	GATATC	2 cut(s)	853, 3202
Eco47I	GGWCC	5 cut(s)	1087, 2483, 2792, 3476, 3616
Eco47III	AGCGCT	1 cut(s)	187
Eco53kI	GAGCTC	2 cut(s)	1746, 3015
Eco57I	CTGAAG	5 cut(s)	1436, 1491, 1698, 3726, 4109
Eco81I	CCTNAGG	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	1541
Eco91I	GGTNACC	1 cut(s)	1826
EcoICRI	GAGCTC	2 cut(s)	1746, 3015
EcoO109I	RGGNCCY	1 cut(s)	1445
EcoO65I	GGTNACC	1 cut(s)	1826
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	9 cut(s)	103, 1386, 2030, 2089, 2554, 3954, 4056, 4110, 4291
EcoRV	GATATC	2 cut(s)	853, 3202
EcoT14I	CCWWGG	3 cut(s)	234, 3607, 4141
EcoT38I	GRGCYC	2 cut(s)	1748, 3017
ErhI	CCWWGG	3 cut(s)	234, 3607, 4141
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	8 cut(s)	617, 845, 1121, 1514, 2771, 3623, 3761, 3889
FalI	AAGNNNNNCTT	2 cut(s)	2361, 2393
FaqI	GGGAC	2 cut(s)	3629, 4114
FatI	CATG	8 cut(s)	613, 841, 1117, 1510, 2767, 3619, 3757, 3885
FauI	CCCGC	1 cut(s)	28
FauNDI	CATATG	2 cut(s)	1033, 4006
FbaI	TGATCA	5 cut(s)	1003, 1270, 3073, 3172, 3256
FokI	GGATG	8 cut(s)	260, 1064, 2537, 2919, 3141, 3260, 3409, 3614
FriOI	GRGCYC	2 cut(s)	1748, 3017
FspBI	CTAG	7 cut(s)	146, 1134, 2282, 2718, 3426, 3588, 4327
GlaI	GCGC	4 cut(s)	187, 1984, 3953, 4190
GsaI	CCCAGC	1 cut(s)	1094
GsuI	CTGGAG	6 cut(s)	2834, 3010, 3347, 3897, 3936, 4314
HaeII	RGCGCY	3 cut(s)	189, 1986, 3955
HaeIII	GGCC	8 cut(s)	226, 1014, 1446, 2080, 2730, 3592, 4056, 4109
HapII	CCGG	5 cut(s)	152, 309, 378, 698, 3464
HgaI	GACGC	2 cut(s)	1977, 2039
HhaI	GCGC	4 cut(s)	188, 1985, 3954, 4191
Hin1II	CATG	8 cut(s)	617, 845, 1121, 1514, 2771, 3623, 3761, 3889
Hin6I	GCGC	4 cut(s)	186, 1983, 3952, 4189
HinP1I	GCGC	4 cut(s)	186, 1983, 3952, 4189
HindIII	AAGCTT	2 cut(s)	985, 3302
HpaII	CCGG	5 cut(s)	152, 309, 378, 698, 3464
Hpy166II	GTNNAC	9 cut(s)	579, 1057, 1507, 1529, 1903, 2096, 2590, 2622, 2889
Hpy8I	GTNNAC	9 cut(s)	579, 1057, 1507, 1529, 1903, 2096, 2590, 2622, 2889
HpyCH4IV	ACGT	1 cut(s)	1338
HpySE526I	ACGT	1 cut(s)	1338
Hsp92II	CATG	8 cut(s)	617, 845, 1121, 1514, 2771, 3623, 3761, 3889
HspAI	GCGC	4 cut(s)	186, 1983, 3952, 4189
Kpn2I	TCCGGA	1 cut(s)	3463
KpnI	GGTACC	2 cut(s)	519, 3556
Ksp22I	TGATCA	5 cut(s)	1003, 1270, 3073, 3172, 3256
LguI	GCTCTTC	3 cut(s)	744, 1965, 3022
LweI	GCATC	1 cut(s)	3592
MabI	ACCWGGT	2 cut(s)	2089, 2554
MaeI	CTAG	7 cut(s)	146, 1134, 2282, 2718, 3426, 3588, 4327
MaeII	ACGT	1 cut(s)	1338
MbiI	CCGCTC	1 cut(s)	23
MfeI	CAATTG	1 cut(s)	4050
MflI	RGATCY	9 cut(s)	100, 2027, 2066, 2683, 2844, 3460, 3986, 4200, 4268
MhlI	GDGCHC	3 cut(s)	1748, 2973, 3017
MlsI	TGGCCA	1 cut(s)	4056
MluNI	TGGCCA	1 cut(s)	4056
MmeI	TCCRAC	5 cut(s)	669, 945, 1758, 2494, 2646
Mox20I	TGGCCA	1 cut(s)	4056
MroI	TCCGGA	1 cut(s)	3463
MroXI	GAANNNNTTC	2 cut(s)	2190, 4230
MscI	TGGCCA	1 cut(s)	4056
MslI	CAYNNNNRTG	1 cut(s)	3624
Msp20I	TGGCCA	1 cut(s)	4056
MspA1I	CMGCKG	7 cut(s)	641, 875, 917, 1193, 1754, 3485, 4194
MspI	CCGG	5 cut(s)	152, 309, 378, 698, 3464
MspR9I	CCNGG	9 cut(s)	105, 1388, 2032, 2091, 2556, 3956, 4058, 4112, 4293
MunI	CAATTG	1 cut(s)	4050
Mva1269I	GAATGC	2 cut(s)	1540, 3193
MvaI	CCWGG	9 cut(s)	105, 1388, 2032, 2091, 2556, 3956, 4058, 4112, 4293
NdeI	CATATG	2 cut(s)	1033, 4006
NlaIII	CATG	8 cut(s)	617, 845, 1121, 1514, 2771, 3623, 3761, 3889
NmeAIII	GCCGAG	1 cut(s)	3980
NspI	RCATGY	1 cut(s)	617
NspV	TTCGAA	1 cut(s)	302
PasI	CCCWGGG	1 cut(s)	4111
PciSI	GCTCTTC	3 cut(s)	744, 1965, 3022
PcsI	WCGNNNNNNNCGW	1 cut(s)	1707
PctI	GAATGC	2 cut(s)	1540, 3193
PdmI	GAANNNNTTC	2 cut(s)	2190, 4230
PfoI	TCCNGGA	1 cut(s)	1386
PshBI	ATTAAT	1 cut(s)	2439
Psp124BI	GAGCTC	2 cut(s)	1748, 3017
Psp6I	CCWGG	9 cut(s)	103, 1386, 2030, 2089, 2554, 3954, 4056, 4110, 4291
PspEI	GGTNACC	1 cut(s)	1826
PspFI	CCCAGC	1 cut(s)	1090
PspGI	CCWGG	9 cut(s)	103, 1386, 2030, 2089, 2554, 3954, 4056, 4110, 4291
PspPI	GGNCC	8 cut(s)	1087, 1445, 2483, 2729, 2792, 3476, 3616, 4108
PstI	CTGCAG	3 cut(s)	1753, 3064, 3144
PstNI	CAGNNNCTG	5 cut(s)	527, 1796, 3485, 3686, 3749
PsuI	RGATCY	9 cut(s)	100, 2027, 2066, 2683, 2844, 3460, 3986, 4200, 4268
PvuII	CAGCTG	6 cut(s)	641, 875, 917, 1193, 1754, 3485
RsaI	GTAC	9 cut(s)	517, 1530, 1795, 2095, 2749, 3151, 3329, 3341, 3554
RsaNI	GTAC	9 cut(s)	516, 1529, 1794, 2094, 2748, 3150, 3328, 3340, 3553
RseI	CAYNNNNRTG	1 cut(s)	3624
SacI	GAGCTC	2 cut(s)	1748, 3017
SapI	GCTCTTC	3 cut(s)	744, 1965, 3022
Sau96I	GGNCC	8 cut(s)	1087, 1445, 2483, 2729, 2792, 3476, 3616, 4108
ScaI	AGTACT	1 cut(s)	2749
ScrFI	CCNGG	9 cut(s)	105, 1388, 2032, 2091, 2556, 3956, 4058, 4112, 4293
SduI	GDGCHC	3 cut(s)	1748, 2973, 3017
SexAI	ACCWGGT	2 cut(s)	2089, 2554
SfaNI	GCATC	1 cut(s)	3592
SfcI	CTRYAG	6 cut(s)	1749, 2130, 2244, 2751, 3060, 3140
SfuI	TTCGAA	1 cut(s)	302
SinI	GGWCC	5 cut(s)	1087, 2483, 2792, 3476, 3616
SmiMI	CAYNNNNRTG	1 cut(s)	3624
SmlI	CTYRAG	5 cut(s)	2158, 2215, 2348, 3010, 3281
SmoI	CTYRAG	5 cut(s)	2158, 2215, 2348, 3010, 3281
SpeI	ACTAGT	1 cut(s)	2717
SspMI	CTAG	7 cut(s)	146, 1134, 2282, 2718, 3426, 3588, 4327
SstI	GAGCTC	2 cut(s)	1748, 3017
StyD4I	CCNGG	9 cut(s)	103, 1386, 2030, 2089, 2554, 3954, 4056, 4110, 4291
StyI	CCWWGG	3 cut(s)	234, 3607, 4141
TaiI	ACGT	1 cut(s)	1341
TaqI	TCGA	8 cut(s)	302, 425, 501, 1164, 2046, 2944, 3204, 4205
TatI	WGTACW	2 cut(s)	1528, 2747
TauI	GCSGC	2 cut(s)	1079, 2080
TscAI	CASTG	6 cut(s)	88, 1912, 2008, 2503, 3919, 4312
TspDTI	ATGAA	9 cut(s)	1506, 1629, 1728, 1908, 1926, 2099, 3038, 3413, 3422
TspGWI	ACGGA	3 cut(s)	232, 445, 878
TspRI	CASTG	6 cut(s)	88, 1912, 2008, 2503, 3919, 4312
VpaK11BI	GGWCC	5 cut(s)	1087, 2483, 2792, 3476, 3616
VspI	ATTAAT	1 cut(s)	2439
XapI	RAATTY	5 cut(s)	194, 373, 2189, 2598, 3850
XceI	RCATGY	1 cut(s)	617
XcmI	CCANNNNNNNNNTGG	4 cut(s)	241, 1765, 2858, 4139
XmnI	GAANNNNTTC	2 cut(s)	2190, 4230
XspI	CTAG	7 cut(s)	146, 1134, 2282, 2718, 3426, 3588, 4327
ZrmI	AGTACT	1 cut(s)	2749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.