Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004317

Physical Location & Seq

Genomic Coordinates Reverse (-)

55127198 .. 55132442

Gene Structure 5245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG351300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4296 bp

ATGGACTCCTCCAAGCTCCCCGCTCCACAACTCCCTCTGCACTCATCAGGTCTGGGTAGTGACGGTGAGGAGGGGTTCGTCAGTGGGGAGGAGGATTTCGATCCTGTTTTGGATAGGGCGTTTGTCAGAGACGAACAACAAACCCTAGCTCCGGCGGAAGGGGAAGTAGTAGATAATAGCAGCAAGGCTGTCAAATTTGTTAGTTCTTCCGAGTTTTTTCTGAGGCCGATTGCCAAGGTCTCCGTGGATGATGATGACGGCGAAGAAGAAGACGAAGAGGATTCGAAAGCCGGTGTGCAAGTGTTTAAGGAGTCTGTTGGGGTGGGTGAGAGTTCTGAGGTGGAGAAGGGTTTCAATTCCGGTGAGTTGGTGAAAGAGAATGGTGTTGGTGGTGAAGTAGGGAAGTCGAAGGTTGCGGAGGGTTTAGGCTCTGTTTCTGTGGCTGAGATAGAGGATAAGAAGGTTGTAGAGCCTAAGGAGAGCGAGGTTGTTAATGGTACCGCAGAAGCTGTGAGGGAGAGTAGTGAGAATGGCTTGGTTGAAGAACACGGTGTGCTATTTACTGGTGGAGGTGACTCAGTTGTGCAAGCTGTGCATGTTGATTTGTCACACACAGGAGCAGCTGTTGTTGGCGATGTGGAGAAGATTGAGGAGTCTGAGATAAAGGGGTTGGAGGTTCCGGTAGGGGTGAGCTTGGATAATGAGTTTGGTCAAATTAGCCGTGAGGTTGAAGAGCCGAAAGATTCAGAGTTGGTTGCTGTGGAGTCTAAGTCTGACGGAGTGGTTGTTGCTGAACCAGCAGTTGATAAGTTGGTTGAAGAACATGGTGTTGATATCACTAGTGAAGGTGACTCAGTTGTGGAAGCTGTCCGTGTTGATTTGTCACACACAGGAGCAGCTGTTGTTGGTGATGTGGAGAAGATTGAGGAATCTGCAATTAAAGGGTTGGAGGTTCCAGCAGGAGTAAGCTTGGAGAATGGATTTGATCAAATTGGCCGTGATTCTGAATTGCCAAATGATTCAAAGTTGGTGGAGTCTGAAAAAGCGGCTGTTGCTGATCCAGCAGATGATAAGTTGGTTGAAGAACATGGTATGGATTTTACTAGCAAGGGCGATTCAGTTGTGCAAGCTGTCGATGTTGATTTGTCACAGACAGGAGCAGATGTTGTTGGTGATGTGGAGAAGATTGAGGAATCTGAAATTAAAGTTCCAATAGGCACGAGCTTGGAGAATGGATTTGATCAAATTAGCCGTGATGTTGAATTGCAGTCCGAGTCTGACAAAGTGGTTGTTGCTGAGTCGGGGAATGTAGAGCAGAAAACTGTTGCTGCTGCTGCTGAGGAAGTAGATTTCCAGGAGAGGGAGGAGAAAGAACTTGAACTGAAGTCCAATGCTGCAACTGGACAGGAAGGGCCCACAATGGAGATAGGTGCTGCTGAAGTAAAAGTAGTGCCAGATGAAACCCAGTCTGTGAACCATGTTTCTGATTCTAGTGTACTGAATGCACCCGAGAGTGCTGAAAAGAGTGCAACTGACCAAGAAATAAAATTAGAGGAGGAAGAGGAGAAGCACTCTCTTGATGAAAGTGGCATTGAATCTTTAGAACCAAGTTCCATTTCACATCAAGAGATAAGGGTTGAAGCTGAAGATGATGACGAAGATGATGACGATAAGGACGATGAAGGGGAAAATGATGGTATGATATTTGGGAACTCTGCAGCTGCCAAACAATTCTTGGAAGAGTTGGAACGGGAATCAGGTACTGGTTCTTACTCAGGTGCAGAGAGTTACGGTGACCGTTCTTTGAGTTATCGTGATGATTCTCAGAGAGTTGATGGGCAGATTGTGACAGACTCAGATGAAGAAGTGGACACTGATGAAGAAGGGGGTGGAAAAGAGTTATTTGATTCTGCTGCATTGGCAGCTCTTCTGAAAGCAGCAACAGGTGGCGCTGCGTCAGATGGTGGCAGTGTCACATTTACCTCCCCAGATGGATCCAGGCTTTTCTCTGTCGAGCGTCCTGCTGGTTTGGGATCCTCAATGCGGCCTATGAAACCTGGTACACGACCAAACCCTTCTACTCTATTTTCCAATGCTACAGTTGGGGGAGATACTGACAACAGCTTGAGTGAAGAAGAGAAAAAGAAACTGGAAAAATTTCAGCAGATAAGGGTTAAGTTCTTAAGGCTTGTTCAGAGATTAGGTGTATCTACAGAAGATTCAATAGCCAAGCAGGTTCTATACCGCCTAGCTCTTGTTTCAGGAAGGCAAAATAGTCGTGAGTTTAGCCTTGAAGCTGCAAAGACAACAGCTCTTGAGCTTGAAGCAGATGGGAAAGACGATCTTGACTTTTCCTTGAACATACTGGTTCTTGGGAAAACAGGTGTGGGGAAGAGTGCTACTATTAATTCTATTTTTGGTGAAGAAAAGACTCCAATTTATGCCTTTGGACCAGCAACAACCACTGTGAAAGAAATTGTTGGAGTGGTGGATGGAATCAAGATTAGGGTTTTTGATACACCAGGTCTTAAATCTGCTGCAATGGAACAAAATGTAAACCGCAAAATTTTATCTTCTGTGCAGAAGTTCACGAAAAAATGCCCCCCAGATATTGTCCTCTATGTGGATCGGTTGGACACCCAAAGTAGGGATCTAAATGATGTGCCAGTATTAAGATCAATTACTAGTGCTTTTGGCTCTTCAATTTGGCGAAGTACTATAGTCACTCTAACCCATGCTGCTTCTGCTCCTCCTGATGGACCGTCAGGCTCTCCTCTGAATTATGAGTTGTTTGTTGCTCAGAGGTCACAGATCCTCCAGCAGACCATTGGACAAGCTATTGGGGATATAAGGTTTACAAATCCAAATATGATGAGTCCTATATCTCTTGTAGAGAACCATCCCTCCTGTCGAAAGAATAGAGAAGGTGAGAAAGTGCTCCCTAATGGTCAAAGCTGGAGACCTCAGCTATTGCTCTTGAGCTCTTCTATGAAGGTCTTAGCTGAGGCAACTAATCTCTCAAAGCCTGCAGAACCATTTGATCACCGAAAACTATTTGGTTTCCGCACCCGTTCAGCTCCTCTTCCATACTTGTTGTCTTGGCTGCTGCAGTCTCGTACCCATCCAAAGCTCTCTGGTGATCAAGGTGGTGAGAATGCGGACTCAGATATCGACTTGGCTGACTTGTCCGATTCTGATAATGAGGAAGAGGAGGATGAGTATGATCAGCTTCCATCATTCAAGCCTCTCAAGAAATCTCAGATTGCTAAGCTTAGCAAAGAGCAGAAGAAGGCGTACCTTGAGGAGTACGATTACAGGGTTAAGCTCCTCCAGAAGAAGATGTGGAGAGAAGAGTTGAAAAGGATGAAAGAAATGAAGAAGGGTAATAAGGCTAGTGCAGACGAGTATGGTTATCTGGGTGAAGAAGATCCGGAAAATGCTGGCCCAGCAGCTGTGCCAGTTGCATTACCTGATATGGTTCTGCCACCTTCTTTTGATAGTGAAAATCCAGCTTACAGGTACCGCTTCTTGGAGCCAACTTCTCAGTTCTTGGCTAGGCCAGTATTGGATGCCCAAGGTTGGGACCATGACTGTGGGTATGATGGTGTCAATCTTGAATACAGTCAAGCCATTGTTAATACTTTTCCAGCTACTGTTGCTGTTCAAGTTACAAAGGACAAGAAGGAGTTTAATCTCCATTTGGATTCTTCAGTTGCTGCTAAGCATGGGGAGAATGGATCAAGTATGGCAGGTTTTGACATTCAAAACATTGGAAAGCAACTTGCTTACATTGTCAGAGGAGAAACCAAATGGAAAAATTTGAAGAAGAACAAGACTACTGCTGGAGTATCCATGACATTTTTAGGTGAAAATGTATCCACTGGAGTCAAAATTGAGGATCAGATTGCCGTTGGCAAGCGCCTGGTATTTGTGGGTAGTGCTGGAACTGTCAGATCTCAGGGTGACTCGGCATATGGAGCCAATGTAGAGGTGCGGTTGAGGGAAGCAGATTTTCCAATTGGCCAGGATCAATCATCATTGGGTCTGTCTCTGGTGAAGTGGAGGGGTGACTTGGCCCTGGGGGCAAATCTTCAGTCCCAGTTTTCCCTTGGACGAGACTACAAGATAGCTGTTCGTGCAGGATTGAACAACAAGCGCAGCGGACAGATCTCGATTAGAACAAGCAGCTCTGAACAACTTCAAATTGCACTTGTGGCTGTCATTCCAATCGTAAGATCCATCTACAATCTTATCTTCCCTGGAGCTTCACTCAGTGAGAATTACTCAATCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0007186 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043021 GO:0043024 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0060089 GO:0061927 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

1431

Amino Acids

154.5

Weight (kDa)

4.53

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIG1	PF04548	786 - 933	9.6e-22	AIG1 family
MMR_HSR1	PF01926	788 - 876	2.9e-09	50S ribosome-binding GTPase
TOC159_MAD	PF11886	1152 - 1416	3.8e-128	Translocase of chloroplast 159/132, membrane anchor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02482 AT4G02510 AT4G02510 AT4G02510 AT4G02510
fragaria_vesca	FvH4_2g25480
malus_domestica	MD03G1285700.v1.1 MD11G1305100.v1.1
prunus_persica	Prupe.8G258800_v2.0.a1 Prupe.8G258800_v2.0.a1
pyrus_communis	pycom03g22640 pycom11g26690
rosa_chinensis	RchiOBHm_Chr6g0293691
rosa_laevigata	RLG00000011932
rosa_multiflora	Rmu_co8307375.1_g000001 Rmu_co8497971.1_g000001 Rmu_sc0005431.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173980
rosa_rugosa	Rorug06G0237500 Rorug06G0237500
rosa_samantha	Rh4AG062400 Rh4AG063400 Rh4AG067300 Rh4BG061800 Rh4CG068100 Rh4DG056700 Rh6AG350100 Rh6BG357600 Rh6CG364400 Rh6DG351300
rosa_wichuraiana	Rw0G022990 Rw6G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	2224, 3740
Acc65I	GGTACC	2 cut(s)	497, 3519
AccB1I	GGYRCC	2 cut(s)	497, 3519
AccBSI	CCGCTC	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	3430
AcoI	YGGCCR	2 cut(s)	994, 4021
AcsI	RAATTY	4 cut(s)	194, 2156, 2565, 3817
AcuI	CTGAAG	5 cut(s)	1403, 1458, 1665, 3693, 4076
AdeI	CACNNNGTG	2 cut(s)	553, 4274
AfaI	GTAC	9 cut(s)	499, 1497, 1762, 2062, 2716, 3118, 3296, 3308, 3521
AflII	CTTAAG	1 cut(s)	2182
AhlI	ACTAGT	2 cut(s)	839, 2684
AjnI	CCWGG	8 cut(s)	1353, 1997, 2056, 2521, 3921, 4023, 4077, 4258
AjuI	GAANNNNNNNTTGG	2 cut(s)	1600, 1632
AloI	GAACNNNNNNTCC	2 cut(s)	2888, 2920
Alw21I	GWGCWC	2 cut(s)	2940, 2984
Alw26I	GTCTC	6 cut(s)	123, 244, 2953, 3117, 4053, 4110
AlwNI	CAGNNNCTG	5 cut(s)	509, 1763, 3452, 3653, 3716
Ama87I	CYCGRG	1 cut(s)	1508
Aor13HI	TCCGGA	1 cut(s)	3430
AoxI	GGCC	8 cut(s)	224, 994, 1412, 2045, 3442, 3557, 4021, 4074
ApaI	GGGCCC	1 cut(s)	1416
ApoI	RAATTY	4 cut(s)	194, 2156, 2565, 3817
ArsI	GACNNNNNNTTYG	2 cut(s)	4079, 4111
AseI	ATTAAT	1 cut(s)	2406
Asp700I	GAANNNNTTC	3 cut(s)	350, 2157, 4197
Asp718I	GGTACC	2 cut(s)	497, 3519
AspLEI	GCGC	3 cut(s)	1952, 3921, 4158
AspS9I	GGNCC	7 cut(s)	1412, 1413, 2450, 2759, 3443, 3583, 4075
AsuII	TTCGAA	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	1508
AvaII	GGWCC	3 cut(s)	2450, 2759, 3583
AxyI	CCTNAGG	1 cut(s)	474
BaeGI	GKGCMC	1 cut(s)	1416
BalI	TGGCCA	1 cut(s)	4023
BamHI	GGATCC	2 cut(s)	1994, 2033
BanI	GGYRCC	2 cut(s)	497, 3519
BanII	GRGCYC	2 cut(s)	1416, 2984
BarI	GAAGNNNNNNTAC	2 cut(s)	3278, 3310
BauI	CACGAG	1 cut(s)	1219
BbsI	GAAGAC	1 cut(s)	276
Bbv12I	GWGCWC	2 cut(s)	2940, 2984
BbvCI	CCTCAGC	3 cut(s)	1338, 2964, 3003
BceAI	ACGGC	5 cut(s)	274, 705, 981, 1236, 3893
BcgI	CGANNNNNNTGC	4 cut(s)	2003, 2037, 2258, 2292
BciT130I	CCWGG	8 cut(s)	1355, 1999, 2058, 2523, 3923, 4025, 4079, 4260
BciVI	GTATCC	2 cut(s)	3859, 3886
BclI	TGATCA	5 cut(s)	985, 1240, 3040, 3139, 3223
BcoDI	GTCTC	6 cut(s)	123, 244, 2953, 3117, 4053, 4110
BcuI	ACTAGT	2 cut(s)	839, 2684
BfaI	CTAG	9 cut(s)	146, 840, 1104, 1491, 2249, 2685, 3393, 3555, 4294
BfmI	CTRYAG	6 cut(s)	1716, 2097, 2211, 2718, 3027, 3107
BfoI	RGCGCY	2 cut(s)	1953, 3922
BfrI	CTTAAG	1 cut(s)	2182
BfuAI	ACCTGC	2 cut(s)	2224, 3740
BfuI	GTATCC	2 cut(s)	3859, 3886
BglI	GCCNNNNNGGC	1 cut(s)	4082
BglII	AGATCT	2 cut(s)	3953, 4167
BlpI	GCTNAGC	3 cut(s)	3267, 3272, 3720
BmcAI	AGTACT	1 cut(s)	2716
Bme1390I	CCNGG	8 cut(s)	1355, 1999, 2058, 2523, 3923, 4025, 4079, 4260
Bme18I	GGWCC	3 cut(s)	2450, 2759, 3583
BmeT110I	CYCGRG	1 cut(s)	1508
BmgT120I	GGNCC	7 cut(s)	1412, 1413, 2450, 2759, 3443, 3583, 4075
BmrFI	CCNGG	8 cut(s)	1355, 1999, 2058, 2523, 3923, 4025, 4079, 4260
BmrI	ACTGGG	2 cut(s)	1459, 4093
BmsI	GCATC	1 cut(s)	3559
BmuI	ACTGGG	2 cut(s)	1459, 4093
BpiI	GAAGAC	1 cut(s)	276
BplI	GAGNNNNNCTC	5 cut(s)	1556, 1588, 4254, 4286, 4268
BpmI	CTGGAG	6 cut(s)	2801, 2977, 3314, 3864, 3903, 4281
Bpu10I	CCTNAGC	3 cut(s)	1338, 2964, 3003
Bpu1102I	GCTNAGC	3 cut(s)	3267, 3272, 3720
Bpu14I	TTCGAA	1 cut(s)	284
BpuEI	CTTGAG	5 cut(s)	2146, 2336, 2998, 3233, 3320
BsaBI	GATNNNNATC	1 cut(s)	99
BsaI	GGTCTC	2 cut(s)	244, 2953
BsaJI	CCNNGG	7 cut(s)	234, 243, 3574, 4077, 4078, 4108, 4258
BsaWI	WCCGGW	3 cut(s)	359, 679, 3430
Bse118I	RCCGGY	1 cut(s)	290
Bse21I	CCTNAGG	1 cut(s)	474
Bse3DI	GCAATG	1 cut(s)	2547
Bse8I	GATNNNNATC	1 cut(s)	99
BseAI	TCCGGA	1 cut(s)	3430
BseBI	CCWGG	8 cut(s)	1355, 1999, 2058, 2523, 3923, 4025, 4079, 4260
BseDI	CCNNGG	7 cut(s)	234, 243, 3574, 4077, 4078, 4108, 4258
BseGI	GGATG	7 cut(s)	253, 2497, 2899, 3121, 3220, 3369, 3574
BseJI	GATNNNNATC	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	2547
BseSI	GKGCMC	1 cut(s)	1416
BseYI	CCCAGC	1 cut(s)	3445
BsgI	GTGCAG	5 cut(s)	23, 1800, 2600, 3417, 4158
BshFI	GGCC	8 cut(s)	226, 996, 1414, 2047, 3444, 3559, 4023, 4076
BshNI	GGYRCC	2 cut(s)	497, 3519
BsiHKAI	GWGCWC	2 cut(s)	2940, 2984
BsiHKCI	CYCGRG	1 cut(s)	1508
BsiSI	CCGG	5 cut(s)	152, 291, 360, 680, 3431
BslFI	GGGAC	2 cut(s)	3596, 4081
BsmAI	GTCTC	6 cut(s)	123, 244, 2953, 3117, 4053, 4110
BsmBI	CGTCTC	1 cut(s)	123
BsmFI	GGGAC	2 cut(s)	3596, 4081
BsmI	GAATGC	2 cut(s)	1507, 3160
BsnI	GGCC	8 cut(s)	226, 996, 1414, 2047, 3444, 3559, 4023, 4076
Bso31I	GGTCTC	2 cut(s)	244, 2953
BsoBI	CYCGRG	1 cut(s)	1508
Bsp119I	TTCGAA	1 cut(s)	284
Bsp120I	GGGCCC	1 cut(s)	1412
Bsp1286I	GDGCHC	3 cut(s)	1416, 2940, 2984
Bsp13I	TCCGGA	1 cut(s)	3430
Bsp1720I	GCTNAGC	3 cut(s)	3267, 3272, 3720
BspANI	GGCC	8 cut(s)	226, 996, 1414, 2047, 3444, 3559, 4023, 4076
BspEI	TCCGGA	1 cut(s)	3430
BspMAI	CTGCAG	3 cut(s)	1720, 3031, 3111
BspMI	ACCTGC	2 cut(s)	2224, 3740
BspQI	GCTCTTC	4 cut(s)	726, 1932, 2704, 2989
BspT104I	TTCGAA	1 cut(s)	284
BspT107I	GGYRCC	2 cut(s)	497, 3519
BspTI	CTTAAG	1 cut(s)	2182
BspTNI	GGTCTC	2 cut(s)	244, 2953
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	2547
BsrFI	RCCGGY	1 cut(s)	290
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	7 cut(s)	234, 243, 3574, 4077, 4078, 4108, 4258
BssSI	CACGAG	1 cut(s)	1219
BssT1I	CCWWGG	3 cut(s)	234, 3574, 4108
Bst2BI	CACGAG	1 cut(s)	1219
Bst2UI	CCWGG	8 cut(s)	1355, 1999, 2058, 2523, 3923, 4025, 4079, 4260
BstAFI	CTTAAG	1 cut(s)	2182
BstAPI	GCANNNNNTGC	1 cut(s)	592
BstBI	TTCGAA	1 cut(s)	284
BstC8I	GCNNGC	5 cut(s)	588, 1128, 3027, 3442, 3917
BstDSI	CCRYGG	1 cut(s)	243
BstEII	GGTNACC	1 cut(s)	1793
BstF5I	GGATG	7 cut(s)	253, 2497, 2899, 3121, 3220, 3369, 3574
BstH2I	RGCGCY	2 cut(s)	1953, 3922
BstHHI	GCGC	3 cut(s)	1952, 3921, 4158
BstMAI	GTCTC	6 cut(s)	123, 244, 2953, 3117, 4053, 4110
BstNI	CCWGG	8 cut(s)	1355, 1999, 2058, 2523, 3923, 4025, 4079, 4260
BstNSI	RCATGY	1 cut(s)	599
BstPI	GGTNACC	1 cut(s)	1793
BstSCI	CCNGG	8 cut(s)	1353, 1997, 2056, 2521, 3921, 4023, 4077, 4258
BstSFI	CTRYAG	6 cut(s)	1716, 2097, 2211, 2718, 3027, 3107
BstSLI	GKGCMC	1 cut(s)	1416
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	8 cut(s)	1994, 2033, 2650, 2811, 3427, 3953, 4167, 4235
BstXI	CCANNNNNNTGG	1 cut(s)	3593
BstYI	RGATCY	8 cut(s)	1994, 2033, 2650, 2811, 3427, 3953, 4167, 4235
Bsu36I	CCTNAGG	1 cut(s)	474
BsuI	GTATCC	2 cut(s)	3859, 3886
BsuRI	GGCC	8 cut(s)	226, 996, 1414, 2047, 3444, 3559, 4023, 4076
BtgI	CCRYGG	1 cut(s)	243
BtgZI	GCGATG	1 cut(s)	648
BtsCI	GGATG	7 cut(s)	253, 2497, 2899, 3121, 3220, 3369, 3574
BtsI	GCAGTG	1 cut(s)	1975
BtsIMutI	CAGTG	6 cut(s)	88, 1872, 1975, 2463, 3879, 4279
BveI	ACCTGC	2 cut(s)	2224, 3740
Cac8I	GCNNGC	5 cut(s)	588, 1128, 3027, 3442, 3917
CaiI	CAGNNNCTG	5 cut(s)	509, 1763, 3452, 3653, 3716
CfoI	GCGC	3 cut(s)	1952, 3921, 4158
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	7 cut(s)	1412, 1413, 2450, 2759, 3443, 3583, 4075
CseI	GACGC	2 cut(s)	1944, 2006
CsiI	ACCWGGT	2 cut(s)	2056, 2521
Csp6I	GTAC	9 cut(s)	498, 1496, 1761, 2061, 2715, 3117, 3295, 3307, 3520
CspCI	CAANNNNNGTGG	2 cut(s)	1011, 1046
CviAII	CATG	8 cut(s)	596, 824, 1088, 1478, 2735, 3587, 3725, 3853
CviQI	GTAC	9 cut(s)	498, 1496, 1761, 2061, 2715, 3117, 3295, 3307, 3520
DraIII	CACNNNGTG	2 cut(s)	553, 4274
EaeI	YGGCCR	2 cut(s)	994, 4021
EciI	GGCGGA	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	2982
Eco130I	CCWWGG	3 cut(s)	234, 3574, 4108
Eco24I	GRGCYC	2 cut(s)	1416, 2984
Eco31I	GGTCTC	2 cut(s)	244, 2953
Eco32I	GATATC	2 cut(s)	835, 3169
Eco47I	GGWCC	3 cut(s)	2450, 2759, 3583
Eco53kI	GAGCTC	1 cut(s)	2982
Eco57I	CTGAAG	5 cut(s)	1403, 1458, 1665, 3693, 4076
Eco81I	CCTNAGG	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	1508
Eco91I	GGTNACC	1 cut(s)	1793
EcoICRI	GAGCTC	1 cut(s)	2982
EcoO109I	RGGNCCY	1 cut(s)	1412
EcoO65I	GGTNACC	1 cut(s)	1793
EcoRII	CCWGG	8 cut(s)	1353, 1997, 2056, 2521, 3921, 4023, 4077, 4258
EcoRV	GATATC	2 cut(s)	835, 3169
EcoT14I	CCWWGG	3 cut(s)	234, 3574, 4108
EcoT38I	GRGCYC	2 cut(s)	1416, 2984
ErhI	CCWWGG	3 cut(s)	234, 3574, 4108
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	8 cut(s)	599, 827, 1091, 1481, 2738, 3590, 3728, 3856
FalI	AAGNNNNNCTT	2 cut(s)	2328, 2360
FaqI	GGGAC	2 cut(s)	3596, 4081
FatI	CATG	8 cut(s)	595, 823, 1087, 1477, 2734, 3586, 3724, 3852
FauI	CCCGC	1 cut(s)	28
FauNDI	CATATG	1 cut(s)	3973
FbaI	TGATCA	5 cut(s)	985, 1240, 3040, 3139, 3223
FokI	GGATG	7 cut(s)	260, 2504, 2886, 3108, 3227, 3376, 3581
FriOI	GRGCYC	2 cut(s)	1416, 2984
FspBI	CTAG	9 cut(s)	146, 840, 1104, 1491, 2249, 2685, 3393, 3555, 4294
GlaI	GCGC	3 cut(s)	1951, 3920, 4157
GsaI	CCCAGC	1 cut(s)	3449
GsuI	CTGGAG	6 cut(s)	2801, 2977, 3314, 3864, 3903, 4281
HaeII	RGCGCY	2 cut(s)	1953, 3922
HaeIII	GGCC	8 cut(s)	226, 996, 1414, 2047, 3444, 3559, 4023, 4076
HapII	CCGG	5 cut(s)	152, 291, 360, 680, 3431
HgaI	GACGC	2 cut(s)	1944, 2006
HhaI	GCGC	3 cut(s)	1952, 3921, 4158
Hin1II	CATG	8 cut(s)	599, 827, 1091, 1481, 2738, 3590, 3728, 3856
Hin6I	GCGC	3 cut(s)	1950, 3919, 4156
HinP1I	GCGC	3 cut(s)	1950, 3919, 4156
HindIII	AAGCTT	2 cut(s)	967, 3269
HpaII	CCGG	5 cut(s)	152, 291, 360, 680, 3431
Hpy166II	GTNNAC	7 cut(s)	1474, 1496, 1870, 2063, 2557, 2589, 2856
Hpy8I	GTNNAC	7 cut(s)	1474, 1496, 1870, 2063, 2557, 2589, 2856
Hsp92II	CATG	8 cut(s)	599, 827, 1091, 1481, 2738, 3590, 3728, 3856
HspAI	GCGC	3 cut(s)	1950, 3919, 4156
Kpn2I	TCCGGA	1 cut(s)	3430
KpnI	GGTACC	2 cut(s)	501, 3523
Ksp22I	TGATCA	5 cut(s)	985, 1240, 3040, 3139, 3223
LguI	GCTCTTC	4 cut(s)	726, 1932, 2704, 2989
LweI	GCATC	1 cut(s)	3559
MabI	ACCWGGT	2 cut(s)	2056, 2521
MaeI	CTAG	9 cut(s)	146, 840, 1104, 1491, 2249, 2685, 3393, 3555, 4294
MbiI	CCGCTC	1 cut(s)	23
MfeI	CAATTG	1 cut(s)	4017
MflI	RGATCY	8 cut(s)	1994, 2033, 2650, 2811, 3427, 3953, 4167, 4235
MhlI	GDGCHC	3 cut(s)	1416, 2940, 2984
MlsI	TGGCCA	1 cut(s)	4023
MluNI	TGGCCA	1 cut(s)	4023
MmeI	TCCRAC	5 cut(s)	651, 927, 1725, 2461, 2613
Mox20I	TGGCCA	1 cut(s)	4023
MroI	TCCGGA	1 cut(s)	3430
MroXI	GAANNNNTTC	3 cut(s)	350, 2157, 4197
MscI	TGGCCA	1 cut(s)	4023
MslI	CAYNNNNRTG	1 cut(s)	3591
Msp20I	TGGCCA	1 cut(s)	4023
MspA1I	CMGCKG	5 cut(s)	623, 899, 1721, 3452, 4161
MspCI	CTTAAG	1 cut(s)	2182
MspI	CCGG	5 cut(s)	152, 291, 360, 680, 3431
MspR9I	CCNGG	8 cut(s)	1355, 1999, 2058, 2523, 3923, 4025, 4079, 4260
MunI	CAATTG	1 cut(s)	4017
Mva1269I	GAATGC	2 cut(s)	1507, 3160
MvaI	CCWGG	8 cut(s)	1355, 1999, 2058, 2523, 3923, 4025, 4079, 4260
NdeI	CATATG	1 cut(s)	3973
NlaIII	CATG	8 cut(s)	599, 827, 1091, 1481, 2738, 3590, 3728, 3856
NmeAIII	GCCGAG	1 cut(s)	3947
NspI	RCATGY	1 cut(s)	599
NspV	TTCGAA	1 cut(s)	284
PasI	CCCWGGG	1 cut(s)	4078
PciSI	GCTCTTC	4 cut(s)	726, 1932, 2704, 2989
PcsI	WCGNNNNNNNCGW	1 cut(s)	1674
PctI	GAATGC	2 cut(s)	1507, 3160
PdmI	GAANNNNTTC	3 cut(s)	350, 2157, 4197
PfoI	TCCNGGA	1 cut(s)	1353
PshBI	ATTAAT	1 cut(s)	2406
Psp124BI	GAGCTC	1 cut(s)	2984
Psp6I	CCWGG	8 cut(s)	1353, 1997, 2056, 2521, 3921, 4023, 4077, 4258
PspEI	GGTNACC	1 cut(s)	1793
PspFI	CCCAGC	1 cut(s)	3445
PspGI	CCWGG	8 cut(s)	1353, 1997, 2056, 2521, 3921, 4023, 4077, 4258
PspOMI	GGGCCC	1 cut(s)	1412
PspPI	GGNCC	7 cut(s)	1412, 1413, 2450, 2759, 3443, 3583, 4075
PstI	CTGCAG	3 cut(s)	1720, 3031, 3111
PstNI	CAGNNNCTG	5 cut(s)	509, 1763, 3452, 3653, 3716
PsuI	RGATCY	8 cut(s)	1994, 2033, 2650, 2811, 3427, 3953, 4167, 4235
PvuII	CAGCTG	4 cut(s)	623, 899, 1721, 3452
RsaI	GTAC	9 cut(s)	499, 1497, 1762, 2062, 2716, 3118, 3296, 3308, 3521
RsaNI	GTAC	9 cut(s)	498, 1496, 1761, 2061, 2715, 3117, 3295, 3307, 3520
RseI	CAYNNNNRTG	1 cut(s)	3591
SacI	GAGCTC	1 cut(s)	2984
SapI	GCTCTTC	4 cut(s)	726, 1932, 2704, 2989
Sau96I	GGNCC	7 cut(s)	1412, 1413, 2450, 2759, 3443, 3583, 4075
ScaI	AGTACT	1 cut(s)	2716
ScrFI	CCNGG	8 cut(s)	1355, 1999, 2058, 2523, 3923, 4025, 4079, 4260
SduI	GDGCHC	3 cut(s)	1416, 2940, 2984
SexAI	ACCWGGT	2 cut(s)	2056, 2521
SfaNI	GCATC	1 cut(s)	3559
SfcI	CTRYAG	6 cut(s)	1716, 2097, 2211, 2718, 3027, 3107
SfuI	TTCGAA	1 cut(s)	284
SinI	GGWCC	3 cut(s)	2450, 2759, 3583
SmiMI	CAYNNNNRTG	1 cut(s)	3591
SmlI	CTYRAG	6 cut(s)	2125, 2182, 2315, 2977, 3248, 3299
SmoI	CTYRAG	6 cut(s)	2125, 2182, 2315, 2977, 3248, 3299
SpeI	ACTAGT	2 cut(s)	839, 2684
SspMI	CTAG	9 cut(s)	146, 840, 1104, 1491, 2249, 2685, 3393, 3555, 4294
SstI	GAGCTC	1 cut(s)	2984
StyD4I	CCNGG	8 cut(s)	1353, 1997, 2056, 2521, 3921, 4023, 4077, 4258
StyI	CCWWGG	3 cut(s)	234, 3574, 4108
TaqI	TCGA	8 cut(s)	99, 284, 407, 1134, 2013, 2911, 3171, 4172
TatI	WGTACW	2 cut(s)	1495, 2714
TauI	GCSGC	2 cut(s)	1049, 2047
TscAI	CASTG	6 cut(s)	88, 1879, 1975, 2470, 3886, 4279
TspDTI	ATGAA	9 cut(s)	1473, 1596, 1695, 1875, 1893, 2066, 3005, 3380, 3389
TspGWI	ACGGA	3 cut(s)	232, 792, 860
TspRI	CASTG	6 cut(s)	88, 1879, 1975, 2470, 3886, 4279
Vha464I	CTTAAG	1 cut(s)	2182
VpaK11BI	GGWCC	3 cut(s)	2450, 2759, 3583
VspI	ATTAAT	1 cut(s)	2406
XapI	RAATTY	4 cut(s)	194, 2156, 2565, 3817
XceI	RCATGY	1 cut(s)	599
XcmI	CCANNNNNNNNNTGG	4 cut(s)	241, 1732, 2825, 4106
XmnI	GAANNNNTTC	3 cut(s)	350, 2157, 4197
XspI	CTAG	9 cut(s)	146, 840, 1104, 1491, 2249, 2685, 3393, 3555, 4294
ZrmI	AGTACT	1 cut(s)	2716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.