Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8307375.1

Orthogroup ID

OG0004317

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 910

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8307375.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 904 bp

gaaagccggtgtgcaagtgtttaaggagtctgttggggtgggtgagagttctgaggtggagaagggtttcaattccggtgagttggtgaaagagaatggtgttggtggtgaagtagagaagtccaaagttgcggagggtttaggctctgtttccgtggctgagatagaggataagaaggttgtagagcctaaggagagcgaggttgttaatggtgccgcagaagctgtgagggagagtagtgagaatggcttggttgaagaacacggtgtgcaagctgtgcatgttgatttgtcacacacaggagcagctgttgttggcgatgtggagaagattgaggagtctgagataaaagggttggaggttcccgtaggggtgagcttggataatgagtctgctcatattagccgtgaggttgaacagccgaaagattcagagttggttgctatggagtccaagtctgacagagtggttgttgctgaaccagcagttgataagttggttgaagaacatggtgttgatatcattagtgaaggtgactctgttgcggaagctgtccgtgttgatttgtcacagacaggagcagctgttgttggtgatgtggagaagattgaggaatctgcaattaaagggttggaggttccagcaggagtaagcttggagaatggatttgatcaaattggccgtgattctgaattgccaaatgattcaaagttggtggatgtgaactctgagtctgaaaaagcggctgttgctgacccagcagatgataagttggttgaagaacatggtatggattttactagcaagggcgattcagttgtgcaagctgttgatgttgatttgtcacagacaggagcagatgttgttggtgatgtggagaagattgaggaatctgaaattaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0007186 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043021 GO:0043024 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0060089 GO:0061927 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

301

Amino Acids

31.47

Weight (kDa)

4.24

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02482 AT4G02510 AT4G02510 AT4G02510 AT4G02510
fragaria_vesca	FvH4_2g25480
malus_domestica	MD03G1285700.v1.1 MD11G1305100.v1.1
prunus_persica	Prupe.8G258800_v2.0.a1 Prupe.8G258800_v2.0.a1
pyrus_communis	pycom03g22640 pycom11g26690
rosa_chinensis	RchiOBHm_Chr6g0293691
rosa_laevigata	RLG00000011932
rosa_multiflora	Rmu_co8307375.1_g000001 Rmu_co8497971.1_g000001 Rmu_sc0005431.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173980
rosa_rugosa	Rorug06G0237500 Rorug06G0237500
rosa_samantha	Rh4AG062400 Rh4AG063400 Rh4AG067300 Rh4BG061800 Rh4CG068100 Rh4DG056700 Rh6AG350100 Rh6BG357600 Rh6CG364400 Rh6DG351300
rosa_wichuraiana	Rw0G022990 Rw6G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	213
AciI	CCGC	4 cut(s)	132, 217, 546, 744
AcoI	YGGCCR	1 cut(s)	680
AdeI	CACNNNGTG	1 cut(s)	269
AgsI	TTSAA	6 cut(s)	71, 258, 417, 504, 709, 780
AluBI	AGCT	8 cut(s)	225, 276, 309, 379, 552, 585, 655, 828
AluI	AGCT	8 cut(s)	225, 276, 309, 379, 552, 585, 655, 828
AlwNI	CAGNNNCTG	1 cut(s)	225
AoxI	GGCC	1 cut(s)	680
ApeKI	GCWGC	2 cut(s)	306, 582
Asp700I	GAANNNNTTC	1 cut(s)	66
AsuHPI	GGTGA	8 cut(s)	54, 90, 98, 120, 386, 546, 606, 882
AxyI	CCTNAGG	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	318, 594
BceAI	ACGGC	2 cut(s)	391, 667
BclI	TGATCA	1 cut(s)	671
BfaI	CTAG	1 cut(s)	802
BisI	GCNGC	4 cut(s)	217, 307, 583, 745
BlsI	GCNGC	4 cut(s)	218, 308, 584, 746
BmiI	GGNNCC	3 cut(s)	215, 364, 640
BsaJI	CCNNGG	1 cut(s)	154
BsaWI	WCCGGW	1 cut(s)	75
BsaXI	ACNNNNNCTCC	8 cut(s)	295, 325, 441, 471, 571, 601, 847, 877
Bse118I	RCCGGY	1 cut(s)	6
Bse21I	CCTNAGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	725
BseMII	CTCAG	4 cut(s)	43, 151, 334, 721
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	318, 594
BseYI	CCCAGC	1 cut(s)	758
BshFI	GGCC	1 cut(s)	682
BshNI	GGYRCC	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	7, 76
BsnI	GGCC	1 cut(s)	682
Bsp143I	GATC	1 cut(s)	671
BspACI	CCGC	4 cut(s)	132, 217, 546, 744
BspANI	GGCC	1 cut(s)	682
BspCNI	CTCAG	4 cut(s)	44, 152, 335, 722
BspLI	GGNNCC	3 cut(s)	215, 364, 640
BspT107I	GGYRCC	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	6
BssAI	RCCGGY	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	671
Bst4CI	ACNGT	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	274, 826
BstDEI	CTNAG	5 cut(s)	52, 160, 190, 343, 730
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	725
BstKTI	GATC	1 cut(s)	674
BstMBI	GATC	1 cut(s)	671
BstMWI	GCNNNNNNNGC	5 cut(s)	222, 278, 483, 750, 759
BstNSI	RCATGY	1 cut(s)	285
BstV1I	GCAGC	2 cut(s)	318, 594
Bsu36I	CCTNAGG	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	682
BtgI	CCRYGG	1 cut(s)	154
BtgZI	GCGATG	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	725
Cac8I	GCNNGC	2 cut(s)	274, 826
CaiI	CAGNNNCTG	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	6
CspCI	CAANNNNNGTGG	2 cut(s)	697, 732
CviAII	CATG	3 cut(s)	282, 510, 786
DdeI	CTNAG	5 cut(s)	52, 160, 190, 343, 730
DpnI	GATC	1 cut(s)	673
DpnII	GATC	1 cut(s)	671
DraIII	CACNNNGTG	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	680
Eco32I	GATATC	1 cut(s)	521
Eco81I	CCTNAGG	1 cut(s)	190
EcoRV	GATATC	1 cut(s)	521
FaeI	CATG	3 cut(s)	285, 513, 789
FaiI	YATR	6 cut(s)	283, 400, 447, 511, 787, 792
FatI	CATG	3 cut(s)	281, 509, 785
FbaI	TGATCA	1 cut(s)	671
Fnu4HI	GCNGC	4 cut(s)	217, 307, 583, 745
FokI	GGATG	1 cut(s)	732
Fsp4HI	GCNGC	4 cut(s)	217, 307, 583, 745
FspBI	CTAG	1 cut(s)	802
GluI	GCNGC	4 cut(s)	217, 307, 583, 745
GsaI	CCCAGC	1 cut(s)	762
HaeIII	GGCC	1 cut(s)	682
HapII	CCGG	2 cut(s)	7, 76
Hin1II	CATG	3 cut(s)	285, 513, 789
HindIII	AAGCTT	1 cut(s)	653
HpaII	CCGG	2 cut(s)	7, 76
HphI	GGTGA	8 cut(s)	54, 90, 98, 120, 386, 546, 606, 882
Hpy166II	GTNNAC	1 cut(s)	725
Hpy188I	TCNGA	8 cut(s)	53, 344, 434, 461, 692, 731, 737, 896
Hpy8I	GTNNAC	1 cut(s)	725
HpyAV	CCTTC	3 cut(s)	56, 170, 525
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4V	TGCA	5 cut(s)	14, 272, 281, 621, 824
HpyF10VI	GCNNNNNNNGC	5 cut(s)	222, 278, 483, 750, 759
HpyF3I	CTNAG	5 cut(s)	52, 160, 190, 343, 730
Hsp92II	CATG	3 cut(s)	285, 513, 789
Ksp22I	TGATCA	1 cut(s)	671
Kzo9I	GATC	1 cut(s)	671
LmnI	GCTCC	3 cut(s)	303, 579, 855
LpnPI	CCDG	9 cut(s)	20, 89, 286, 496, 562, 631, 655, 772, 838
Lsp1109I	GCAGC	2 cut(s)	318, 594
MaeI	CTAG	1 cut(s)	802
MaeIII	GTNAC	4 cut(s)	292, 534, 568, 844
MalI	GATC	1 cut(s)	673
MboI	GATC	1 cut(s)	671
MboII	GAAGA	6 cut(s)	270, 341, 516, 617, 792, 893
MluCI	AATT	5 cut(s)	71, 622, 676, 693, 898
MlyI	GAGTC	6 cut(s)	36, 348, 399, 459, 531, 741
MmeI	TCCRAC	2 cut(s)	337, 613
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	4 cut(s)	22, 208, 625, 901
MspA1I	CMGCKG	2 cut(s)	309, 585
MspI	CCGG	2 cut(s)	7, 76
MwoI	GCNNNNNNNGC	5 cut(s)	222, 278, 483, 750, 759
NdeII	GATC	1 cut(s)	671
NlaIII	CATG	3 cut(s)	285, 513, 789
NlaIV	GGNNCC	3 cut(s)	215, 364, 640
NmuCI	GTSAC	4 cut(s)	292, 534, 568, 844
NspI	RCATGY	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	6 cut(s)	429, 615, 687, 705, 813, 891
PkrI	GCNGC	4 cut(s)	218, 308, 584, 746
PleI	GAGTC	6 cut(s)	35, 347, 398, 458, 531, 740
PpsI	GAGTC	6 cut(s)	35, 347, 398, 458, 531, 740
PspFI	CCCAGC	1 cut(s)	758
PspN4I	GGNNCC	3 cut(s)	215, 364, 640
PstNI	CAGNNNCTG	1 cut(s)	225
PvuII	CAGCTG	2 cut(s)	309, 585
SaqAI	TTAA	4 cut(s)	22, 208, 625, 901
SatI	GCNGC	4 cut(s)	217, 307, 583, 745
Sau3AI	GATC	1 cut(s)	671
SchI	GAGTC	6 cut(s)	36, 348, 399, 459, 531, 741
Sse9I	AATT	5 cut(s)	71, 622, 676, 693, 898
SsiI	CCGC	4 cut(s)	132, 217, 546, 744
SspMI	CTAG	1 cut(s)	802
TaaI	ACNGT	1 cut(s)	267
TasI	AATT	5 cut(s)	71, 622, 676, 693, 898
TauI	GCSGC	2 cut(s)	219, 747
TfiI	GAWTC	6 cut(s)	429, 615, 687, 705, 813, 891
Tru1I	TTAA	4 cut(s)	22, 208, 625, 901
Tru9I	TTAA	4 cut(s)	22, 208, 625, 901
TseFI	GTSAC	4 cut(s)	292, 534, 568, 844
TseI	GCWGC	2 cut(s)	306, 582
Tsp45I	GTSAC	4 cut(s)	292, 534, 568, 844
TspGWI	ACGGA	2 cut(s)	143, 546
XceI	RCATGY	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.