Holliday junction DNA helicase ruvB N-terminus
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G02890 AT1G02890 AT4G02480 |
| fragaria_vesca | FvH4_2g25490 FvH4_2g25490 FvH4_2g25490 |
| malus_domestica | MD03G1285800.v1.1 MD11G1305200.v1.1 MD11G1305300.v1.1 MD11G1305400.v1.1 |
| prunus_persica | Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1 |
| pyrus_communis | pycom03g22650 pycom11g26700 pycom11g26720 |
| rosa_chinensis | RchiOBHm_Chr6g0293701 |
| rosa_laevigata | RLG00000011931 |
| rosa_roxburghii | Rroxscaffold_7G00173960 |
| rosa_rugosa | Rorug06G0237500 |
| rosa_samantha | Rh6AG350200 Rh6BG357700 Rh6CG364500 Rh6DG351400 |
| rosa_wichuraiana | Rw6G030490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2168 |
| Acc16I | TGCGCA | 1 cut(s) | 3459 |
| AccB1I | GGYRCC | 2 cut(s) | 1124, 1490 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1823 |
| AccBSI | CCGCTC | 1 cut(s) | 117 |
| AccI | GTMKAC | 4 cut(s) | 1417, 2392, 3070, 3494 |
| AccII | CGCG | 1 cut(s) | 36 |
| AccIII | TCCGGA | 3 cut(s) | 169, 946, 2278 |
| AcoI | YGGCCR | 2 cut(s) | 454, 1094 |
| AcsI | RAATTY | 3 cut(s) | 1130, 1260, 1763 |
| AcuI | CTGAAG | 5 cut(s) | 353, 2628, 2732, 2840, 2852 |
| AfaI | GTAC | 7 cut(s) | 502, 943, 970, 2918, 3076, 3102, 3399 |
| AfeI | AGCGCT | 1 cut(s) | 748 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 288, 530, 758, 1051, 1114, 1811, 1823, 3136 |
| AflII | CTTAAG | 1 cut(s) | 518 |
| AflIII | ACRYGT | 1 cut(s) | 3091 |
| AjiI | CACGTC | 2 cut(s) | 262, 3002 |
| AjnI | CCWGG | 5 cut(s) | 782, 1191, 1525, 2215, 3010 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1121, 1153, 2399, 2431 |
| Alw21I | GWGCWC | 2 cut(s) | 413, 3513 |
| Alw26I | GTCTC | 1 cut(s) | 305 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 382, 863 |
| Ama87I | CYCGRG | 1 cut(s) | 176 |
| Aor13HI | TCCGGA | 3 cut(s) | 169, 946, 2278 |
| Aor51HI | AGCGCT | 1 cut(s) | 748 |
| ApoI | RAATTY | 3 cut(s) | 1130, 1260, 1763 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 830, 862 |
| AseI | ATTAAT | 2 cut(s) | 2019, 2487 |
| AspLEI | GCGC | 5 cut(s) | 38, 749, 1778, 1783, 3460 |
| AspS9I | GGNCC | 8 cut(s) | 140, 172, 787, 1430, 1532, 1575, 1814, 2805 |
| AsuC2I | CCSGG | 1 cut(s) | 525 |
| AvaI | CYCGRG | 1 cut(s) | 176 |
| AvaII | GGWCC | 6 cut(s) | 140, 172, 787, 1430, 1532, 1814 |
| AxyI | CCTNAGG | 1 cut(s) | 2379 |
| BalI | TGGCCA | 1 cut(s) | 456 |
| BamHI | GGATCC | 3 cut(s) | 1673, 2527, 3238 |
| BanI | GGYRCC | 2 cut(s) | 1124, 1490 |
| BanII | GRGCYC | 3 cut(s) | 253, 1412, 3513 |
| BbsI | GAAGAC | 2 cut(s) | 2216, 3004 |
| Bbv12I | GWGCWC | 2 cut(s) | 413, 3513 |
| BceAI | ACGGC | 4 cut(s) | 121, 206, 244, 266 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1568, 1602, 2402, 2436, 2916, 2950 |
| BciT130I | CCWGG | 5 cut(s) | 784, 1193, 1527, 2217, 3012 |
| BciVI | GTATCC | 1 cut(s) | 1054 |
| BcnI | CCSGG | 1 cut(s) | 525 |
| BcoDI | GTCTC | 1 cut(s) | 305 |
| BfaI | CTAG | 5 cut(s) | 1089, 1224, 1572, 2943, 2958 |
| BfmI | CTRYAG | 5 cut(s) | 315, 543, 1434, 2669, 3318 |
| BfoI | RGCGCY | 2 cut(s) | 750, 1779 |
| BfrI | CTTAAG | 1 cut(s) | 518 |
| BfuI | GTATCC | 1 cut(s) | 1054 |
| BglII | AGATCT | 1 cut(s) | 1393 |
| BlpI | GCTNAGC | 1 cut(s) | 3566 |
| BmcAI | AGTACT | 2 cut(s) | 502, 970 |
| Bme1390I | CCNGG | 6 cut(s) | 525, 784, 1193, 1527, 2217, 3012 |
| Bme18I | GGWCC | 6 cut(s) | 140, 172, 787, 1430, 1532, 1814 |
| BmeT110I | CYCGRG | 1 cut(s) | 176 |
| BmgBI | CACGTC | 2 cut(s) | 262, 3002 |
| BmgT120I | GGNCC | 8 cut(s) | 140, 172, 787, 1430, 1532, 1575, 1814, 2805 |
| BmrFI | CCNGG | 6 cut(s) | 525, 784, 1193, 1527, 2217, 3012 |
| BmrI | ACTGGG | 4 cut(s) | 400, 1413, 2179, 3070 |
| BmuI | ACTGGG | 4 cut(s) | 400, 1413, 2179, 3070 |
| BpiI | GAAGAC | 2 cut(s) | 2216, 3004 |
| BpmI | CTGGAG | 2 cut(s) | 1175, 1630 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3566 |
| BpuEI | CTTGAG | 2 cut(s) | 693, 2051 |
| BpuMI | CCSGG | 1 cut(s) | 525 |
| BsaAI | YACGTR | 2 cut(s) | 1415, 3074 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1200, 3237 |
| BsaJI | CCNNGG | 5 cut(s) | 783, 2287, 2808, 3011, 3158 |
| BsaWI | WCCGGW | 4 cut(s) | 169, 751, 946, 2278 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1399, 1429 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 288, 530, 758, 1051, 1114, 1811, 1823, 3136 |
| Bse1I | ACTGG | 9 cut(s) | 387, 406, 1408, 1647, 2185, 2408, 2731, 3065, 3267 |
| Bse21I | CCTNAGG | 1 cut(s) | 2379 |
| Bse3DI | GCAATG | 2 cut(s) | 1918, 2103 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1200, 3237 |
| BseAI | TCCGGA | 3 cut(s) | 169, 946, 2278 |
| BseBI | CCWGG | 5 cut(s) | 784, 1193, 1527, 2217, 3012 |
| BseDI | CCNNGG | 5 cut(s) | 783, 2287, 2808, 3011, 3158 |
| BseJI | GATNNNNATC | 2 cut(s) | 1200, 3237 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 288, 530, 758, 1051, 1114, 1811, 1823, 3136 |
| BseMI | GCAATG | 2 cut(s) | 1918, 2103 |
| BseMII | CTCAG | 8 cut(s) | 147, 945, 1404, 2393, 2592, 3200, 3480, 3580 |
| BseNI | ACTGG | 9 cut(s) | 387, 406, 1408, 1647, 2185, 2408, 2731, 3065, 3267 |
| BseRI | GAGGAG | 6 cut(s) | 42, 373, 1794, 3175, 3398, 3503 |
| BseYI | CCCAGC | 1 cut(s) | 2568 |
| BsgI | GTGCAG | 1 cut(s) | 1593 |
| Bsh1236I | CGCG | 1 cut(s) | 36 |
| Bsh1285I | CGRYCG | 1 cut(s) | 940 |
| BshNI | GGYRCC | 2 cut(s) | 1124, 1490 |
| BsiEI | CGRYCG | 1 cut(s) | 940 |
| BsiHKAI | GWGCWC | 2 cut(s) | 413, 3513 |
| BsiHKCI | CYCGRG | 1 cut(s) | 176 |
| BsiSI | CCGG | 5 cut(s) | 170, 524, 752, 947, 2279 |
| BslFI | GGGAC | 5 cut(s) | 405, 800, 1099, 1827, 2194 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 288, 530, 758, 1051, 1114, 1811, 1823, 3136 |
| BsmAI | GTCTC | 1 cut(s) | 305 |
| BsmFI | GGGAC | 5 cut(s) | 405, 800, 1099, 1827, 2194 |
| BsmI | GAATGC | 5 cut(s) | 473, 714, 1552, 2463, 2676 |
| BsoBI | CYCGRG | 1 cut(s) | 176 |
| Bsp1286I | GDGCHC | 4 cut(s) | 253, 413, 1412, 3513 |
| Bsp13I | TCCGGA | 3 cut(s) | 169, 946, 2278 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3566 |
| BspCNI | CTCAG | 8 cut(s) | 148, 946, 1403, 2392, 2593, 3201, 3481, 3579 |
| BspEI | TCCGGA | 3 cut(s) | 169, 946, 2278 |
| BspFNI | CGCG | 1 cut(s) | 36 |
| BspMAI | CTGCAG | 4 cut(s) | 319, 547, 1438, 3322 |
| BspQI | GCTCTTC | 1 cut(s) | 28 |
| BspT107I | GGYRCC | 2 cut(s) | 1124, 1490 |
| BspTI | CTTAAG | 1 cut(s) | 518 |
| BsrBI | CCGCTC | 1 cut(s) | 117 |
| BsrDI | GCAATG | 2 cut(s) | 1918, 2103 |
| BsrI | ACTGG | 9 cut(s) | 387, 406, 1408, 1647, 2185, 2408, 2731, 3065, 3267 |
| BssECI | CCNNGG | 5 cut(s) | 783, 2287, 2808, 3011, 3158 |
| BssNAI | GTATAC | 1 cut(s) | 1418 |
| BssT1I | CCWWGG | 2 cut(s) | 2287, 2808 |
| Bst1107I | GTATAC | 1 cut(s) | 1418 |
| Bst2UI | CCWGG | 5 cut(s) | 784, 1193, 1527, 2217, 3012 |
| Bst4CI | ACNGT | 8 cut(s) | 451, 796, 2448, 2473, 2483, 2871, 3329, 3402 |
| Bst6I | CTCTTC | 6 cut(s) | 28, 329, 350, 1107, 1851, 2859 |
| BstAFI | CTTAAG | 1 cut(s) | 518 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 597, 1385, 1616, 1696 |
| BstBAI | YACGTR | 2 cut(s) | 1415, 3074 |
| BstC8I | GCNNGC | 4 cut(s) | 122, 1688, 1692, 2013 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3134 |
| BstFNI | CGCG | 1 cut(s) | 36 |
| BstH2I | RGCGCY | 2 cut(s) | 750, 1779 |
| BstHHI | GCGC | 5 cut(s) | 38, 749, 1778, 1783, 3460 |
| BstMAI | GTCTC | 1 cut(s) | 305 |
| BstMCI | CGRYCG | 1 cut(s) | 940 |
| BstNI | CCWGG | 5 cut(s) | 784, 1193, 1527, 2217, 3012 |
| BstNSI | RCATGY | 3 cut(s) | 668, 2992, 3458 |
| BstSCI | CCNGG | 6 cut(s) | 523, 782, 1191, 1525, 2215, 3010 |
| BstSFI | CTRYAG | 5 cut(s) | 315, 543, 1434, 2669, 3318 |
| BstSNI | TACGTA | 1 cut(s) | 3074 |
| BstUI | CGCG | 1 cut(s) | 36 |
| BstV2I | GAAGAC | 2 cut(s) | 2216, 3004 |
| BstX2I | RGATCY | 6 cut(s) | 487, 779, 1393, 1673, 2527, 3238 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2219 |
| BstYI | RGATCY | 6 cut(s) | 487, 779, 1393, 1673, 2527, 3238 |
| BstZ17I | GTATAC | 1 cut(s) | 1418 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2379 |
| BsuI | GTATCC | 1 cut(s) | 1054 |
| BtrI | CACGTC | 2 cut(s) | 262, 3002 |
| BtsI | GCAGTG | 4 cut(s) | 1014, 1716, 2934, 3421 |
| Cac8I | GCNNGC | 4 cut(s) | 122, 1688, 1692, 2013 |
| CaiI | CAGNNNCTG | 2 cut(s) | 382, 863 |
| CfoI | GCGC | 5 cut(s) | 38, 749, 1778, 1783, 3460 |
| Cfr13I | GGNCC | 8 cut(s) | 140, 172, 787, 1430, 1532, 1575, 1814, 2805 |
| CseI | GACGC | 1 cut(s) | 24 |
| Csp6I | GTAC | 7 cut(s) | 501, 942, 969, 2917, 3075, 3101, 3398 |
| CviQI | GTAC | 7 cut(s) | 501, 942, 969, 2917, 3075, 3101, 3398 |
| DraI | TTTAAA | 3 cut(s) | 1744, 3435, 3451 |
| EaeI | YGGCCR | 2 cut(s) | 454, 1094 |
| Eam1104I | CTCTTC | 6 cut(s) | 28, 329, 350, 1107, 1851, 2859 |
| EarI | CTCTTC | 6 cut(s) | 28, 329, 350, 1107, 1851, 2859 |
| EciI | GGCGGA | 4 cut(s) | 34, 257, 281, 3416 |
| Ecl136II | GAGCTC | 1 cut(s) | 3511 |
| Eco105I | TACGTA | 1 cut(s) | 3074 |
| Eco130I | CCWWGG | 2 cut(s) | 2287, 2808 |
| Eco147I | AGGCCT | 4 cut(s) | 80, 1079, 2863, 3121 |
| Eco24I | GRGCYC | 3 cut(s) | 253, 1412, 3513 |
| Eco47I | GGWCC | 6 cut(s) | 140, 172, 787, 1430, 1532, 1814 |
| Eco47III | AGCGCT | 1 cut(s) | 748 |
| Eco53kI | GAGCTC | 1 cut(s) | 3511 |
| Eco57I | CTGAAG | 5 cut(s) | 353, 2628, 2732, 2840, 2852 |
| Eco81I | CCTNAGG | 1 cut(s) | 2379 |
| Eco88I | CYCGRG | 1 cut(s) | 176 |
| EcoICRI | GAGCTC | 1 cut(s) | 3511 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3134 |
| EcoO109I | RGGNCCY | 2 cut(s) | 787, 2805 |
| EcoRI | GAATTC | 1 cut(s) | 1260 |
| EcoRII | CCWGG | 5 cut(s) | 782, 1191, 1525, 2215, 3010 |
| EcoT14I | CCWWGG | 2 cut(s) | 2287, 2808 |
| EcoT22I | ATGCAT | 3 cut(s) | 670, 2119, 2595 |
| EcoT38I | GRGCYC | 3 cut(s) | 253, 1412, 3513 |
| ErhI | CCWWGG | 2 cut(s) | 2287, 2808 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1830, 1862, 2379, 2411, 3361, 3393 |
| FaqI | GGGAC | 5 cut(s) | 405, 800, 1099, 1827, 2194 |
| FauI | CCCGC | 1 cut(s) | 429 |
| FblI | GTMKAC | 4 cut(s) | 1417, 2392, 3070, 3494 |
| FriOI | GRGCYC | 3 cut(s) | 253, 1412, 3513 |
| FspAI | RTGCGCAY | 1 cut(s) | 3459 |
| FspBI | CTAG | 5 cut(s) | 1089, 1224, 1572, 2943, 2958 |
| FspI | TGCGCA | 1 cut(s) | 3459 |
| GlaI | GCGC | 5 cut(s) | 37, 748, 1777, 1782, 3459 |
| GsaI | CCCAGC | 1 cut(s) | 2572 |
| GsuI | CTGGAG | 2 cut(s) | 1175, 1630 |
| HaeII | RGCGCY | 2 cut(s) | 750, 1779 |
| HapII | CCGG | 5 cut(s) | 170, 524, 752, 947, 2279 |
| HgaI | GACGC | 1 cut(s) | 24 |
| HhaI | GCGC | 5 cut(s) | 38, 749, 1778, 1783, 3460 |
| Hin6I | GCGC | 5 cut(s) | 36, 747, 1776, 1781, 3458 |
| HinP1I | GCGC | 5 cut(s) | 36, 747, 1776, 1781, 3458 |
| HincII | GTYRAC | 7 cut(s) | 226, 540, 1221, 2974, 2983, 3175, 3495 |
| HindII | GTYRAC | 7 cut(s) | 226, 540, 1221, 2974, 2983, 3175, 3495 |
| HindIII | AAGCTT | 2 cut(s) | 2009, 2747 |
| HpaI | GTTAAC | 2 cut(s) | 226, 3175 |
| HpaII | CCGG | 5 cut(s) | 170, 524, 752, 947, 2279 |
| Hpy99I | CGWCG | 3 cut(s) | 130, 638, 3406 |
| HpyCH4III | ACNGT | 8 cut(s) | 451, 796, 2448, 2473, 2483, 2871, 3329, 3402 |
| HpyCH4IV | ACGT | 7 cut(s) | 261, 1414, 2919, 3001, 3073, 3091, 3246 |
| HpySE526I | ACGT | 7 cut(s) | 261, 1414, 2919, 3001, 3073, 3091, 3246 |
| HspAI | GCGC | 5 cut(s) | 36, 747, 1776, 1781, 3458 |
| KflI | GGGWCCC | 1 cut(s) | 787 |
| Kpn2I | TCCGGA | 3 cut(s) | 169, 946, 2278 |
| KspAI | GTTAAC | 2 cut(s) | 226, 3175 |
| LguI | GCTCTTC | 1 cut(s) | 28 |
| LmnI | GCTCC | 9 cut(s) | 114, 130, 754, 1407, 2180, 2307, 2959, 3193, 3516 |
| MaeI | CTAG | 5 cut(s) | 1089, 1224, 1572, 2943, 2958 |
| MaeII | ACGT | 7 cut(s) | 261, 1414, 2919, 3001, 3073, 3091, 3246 |
| MbiI | CCGCTC | 1 cut(s) | 117 |
| MflI | RGATCY | 6 cut(s) | 487, 779, 1393, 1673, 2527, 3238 |
| MhlI | GDGCHC | 4 cut(s) | 253, 413, 1412, 3513 |
| MlsI | TGGCCA | 1 cut(s) | 456 |
| MluNI | TGGCCA | 1 cut(s) | 456 |
| MlyI | GAGTC | 2 cut(s) | 167, 3500 |
| MmeI | TCCRAC | 3 cut(s) | 123, 2169, 2397 |
| Mox20I | TGGCCA | 1 cut(s) | 456 |
| Mph1103I | ATGCAT | 3 cut(s) | 670, 2119, 2595 |
| MroI | TCCGGA | 3 cut(s) | 169, 946, 2278 |
| MscI | TGGCCA | 1 cut(s) | 456 |
| MslI | CAYNNNNRTG | 4 cut(s) | 956, 1488, 2217, 3459 |
| Msp20I | TGGCCA | 1 cut(s) | 456 |
| MspA1I | CMGCKG | 3 cut(s) | 206, 2374, 2887 |
| MspCI | CTTAAG | 1 cut(s) | 518 |
| MspI | CCGG | 5 cut(s) | 170, 524, 752, 947, 2279 |
| MspR9I | CCNGG | 6 cut(s) | 525, 784, 1193, 1527, 2217, 3012 |
| MteI | GCGCNGCGC | 1 cut(s) | 1779 |
| Mva1269I | GAATGC | 5 cut(s) | 473, 714, 1552, 2463, 2676 |
| MvaI | CCWGG | 5 cut(s) | 784, 1193, 1527, 2217, 3012 |
| MvnI | CGCG | 1 cut(s) | 36 |
| NciI | CCSGG | 1 cut(s) | 525 |
| NmuCI | GTSAC | 8 cut(s) | 846, 986, 1285, 1316, 2362, 2706, 2722, 3293 |
| NsbI | TGCGCA | 1 cut(s) | 3459 |
| NsiI | ATGCAT | 3 cut(s) | 670, 2119, 2595 |
| NspI | RCATGY | 3 cut(s) | 668, 2992, 3458 |
| PaeR7I | CTCGAG | 1 cut(s) | 176 |
| PceI | AGGCCT | 4 cut(s) | 80, 1079, 2863, 3121 |
| PciSI | GCTCTTC | 1 cut(s) | 28 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1515 |
| PctI | GAATGC | 5 cut(s) | 473, 714, 1552, 2463, 2676 |
| PfeI | GAWTC | 9 cut(s) | 152, 209, 373, 608, 1159, 1480, 1511, 1553, 2335 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1823 |
| PfoI | TCCNGGA | 1 cut(s) | 1191 |
| Ple19I | CGATCG | 1 cut(s) | 940 |
| PleI | GAGTC | 2 cut(s) | 166, 3499 |
| PpsI | GAGTC | 2 cut(s) | 166, 3499 |
| Ppu21I | YACGTR | 2 cut(s) | 1415, 3074 |
| PpuMI | RGGWCCY | 1 cut(s) | 787 |
| PshBI | ATTAAT | 2 cut(s) | 2019, 2487 |
| PsiI | TTATAA | 1 cut(s) | 2168 |
| Psp124BI | GAGCTC | 1 cut(s) | 3513 |
| Psp5II | RGGWCCY | 1 cut(s) | 787 |
| Psp6I | CCWGG | 5 cut(s) | 782, 1191, 1525, 2215, 3010 |
| PspFI | CCCAGC | 1 cut(s) | 2568 |
| PspGI | CCWGG | 5 cut(s) | 782, 1191, 1525, 2215, 3010 |
| PspPI | GGNCC | 8 cut(s) | 140, 172, 787, 1430, 1532, 1575, 1814, 2805 |
| PspPPI | RGGWCCY | 1 cut(s) | 787 |
| PspXI | VCTCGAGB | 1 cut(s) | 176 |
| PstI | CTGCAG | 4 cut(s) | 319, 547, 1438, 3322 |
| PstNI | CAGNNNCTG | 2 cut(s) | 382, 863 |
| PsuI | RGATCY | 6 cut(s) | 487, 779, 1393, 1673, 2527, 3238 |
| PvuI | CGATCG | 1 cut(s) | 940 |
| PvuII | CAGCTG | 3 cut(s) | 206, 2374, 2887 |
| RsaI | GTAC | 7 cut(s) | 502, 943, 970, 2918, 3076, 3102, 3399 |
| RsaNI | GTAC | 7 cut(s) | 501, 942, 969, 2917, 3075, 3101, 3398 |
| RseI | CAYNNNNRTG | 4 cut(s) | 956, 1488, 2217, 3459 |
| SacI | GAGCTC | 1 cut(s) | 3513 |
| SalI | GTCGAC | 1 cut(s) | 3493 |
| SapI | GCTCTTC | 1 cut(s) | 28 |
| Sau96I | GGNCC | 8 cut(s) | 140, 172, 787, 1430, 1532, 1575, 1814, 2805 |
| SbfI | CCTGCAGG | 1 cut(s) | 1438 |
| ScaI | AGTACT | 2 cut(s) | 502, 970 |
| SchI | GAGTC | 2 cut(s) | 167, 3500 |
| ScrFI | CCNGG | 6 cut(s) | 525, 784, 1193, 1527, 2217, 3012 |
| SdaI | CCTGCAGG | 1 cut(s) | 1438 |
| SduI | GDGCHC | 4 cut(s) | 253, 413, 1412, 3513 |
| SfcI | CTRYAG | 5 cut(s) | 315, 543, 1434, 2669, 3318 |
| Sfr274I | CTCGAG | 1 cut(s) | 176 |
| SinI | GGWCC | 6 cut(s) | 140, 172, 787, 1430, 1532, 1814 |
| SlaI | CTCGAG | 1 cut(s) | 176 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 956, 1488, 2217, 3459 |
| SmlI | CTYRAG | 4 cut(s) | 176, 518, 708, 2030 |
| SmoI | CTYRAG | 4 cut(s) | 176, 518, 708, 2030 |
| SnaBI | TACGTA | 1 cut(s) | 3074 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1438 |
| SseBI | AGGCCT | 4 cut(s) | 80, 1079, 2863, 3121 |
| SspI | AATATT | 2 cut(s) | 2070, 2455 |
| SspMI | CTAG | 5 cut(s) | 1089, 1224, 1572, 2943, 2958 |
| SstI | GAGCTC | 1 cut(s) | 3513 |
| StuI | AGGCCT | 4 cut(s) | 80, 1079, 2863, 3121 |
| StyD4I | CCNGG | 6 cut(s) | 523, 782, 1191, 1525, 2215, 3010 |
| StyI | CCWWGG | 2 cut(s) | 2287, 2808 |
| TaaI | ACNGT | 8 cut(s) | 451, 796, 2448, 2473, 2483, 2871, 3329, 3402 |
| TaiI | ACGT | 7 cut(s) | 264, 1417, 2922, 3004, 3076, 3094, 3249 |
| TaqI | TCGA | 5 cut(s) | 177, 371, 1509, 2265, 3494 |
| TatI | WGTACW | 2 cut(s) | 500, 968 |
| TauI | GCSGC | 5 cut(s) | 120, 242, 281, 298, 1099 |
| TfiI | GAWTC | 9 cut(s) | 152, 209, 373, 608, 1159, 1480, 1511, 1553, 2335 |
| TseFI | GTSAC | 8 cut(s) | 846, 986, 1285, 1316, 2362, 2706, 2722, 3293 |
| Tsp45I | GTSAC | 8 cut(s) | 846, 986, 1285, 1316, 2362, 2706, 2722, 3293 |
| TspGWI | ACGGA | 3 cut(s) | 143, 484, 2509 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1823 |
| Vha464I | CTTAAG | 1 cut(s) | 518 |
| VpaK11BI | GGWCC | 6 cut(s) | 140, 172, 787, 1430, 1532, 1814 |
| VspI | ATTAAT | 2 cut(s) | 2019, 2487 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3134 |
| XapI | RAATTY | 3 cut(s) | 1130, 1260, 1763 |
| XceI | RCATGY | 3 cut(s) | 668, 2992, 3458 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3232 |
| XhoI | CTCGAG | 1 cut(s) | 176 |
| XmiI | GTMKAC | 4 cut(s) | 1417, 2392, 3070, 3494 |
| XspI | CTAG | 5 cut(s) | 1089, 1224, 1572, 2943, 2958 |
| ZrmI | AGTACT | 2 cut(s) | 502, 970 |
| Zsp2I | ATGCAT | 3 cut(s) | 670, 2119, 2595 |