Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006487

Physical Location & Seq

Genomic Coordinates Forward (+)

56266622 .. 56276473

Gene Structure 9852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26354

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3753 bp

ATGGTTGAAACCAGACGCAGCTCTTCTTCCAAACGCACCCTATCGGCCTCTCCTCCCCCCAATCCCAAACGCTCAAAGGCCTCTGATGCTTCGTCATCCAACAACGGCGTTCGGAGCGGCACGCCGACGGAGCCTCTGGGTCCGATAAAGGAATCTGAGTCGCAATCTCCGGACCTCGAGCTGCGATCCCCTGATCCGCAGACAGCTGATTCCTTGAAGGCCGTTAACGGCTCTGATGCGGCGGAGAGAGCCCCTGATGACGTGGCGGAAGCGGAGGCCGCCGCCTTGGGGTCGCCGCAGCCTTTGGGCGAGACTGCAGTTCGTTCTGGGCTGAAGAGGACTAAGAAGGTTCCGAAGAGGAGTGCGAAATCGAATCAGAAACTGGCGTGGGGACAGCTTCTTTCCCAGTGCTCTAAGAACCCGCATCAGTTTCTTTGTGATACTTTCACTGTTGGCCAAAGTCGTGAATGCAATTTATGTCTTAAAGATCCATCCGTTAGTACTACACTCTGTAAACTTAAGCCGGGTGAAGGTTCGTCAACTGCAGAAATGGAAATTACAGGGGGTAAAGGTTATGTTCAAGTTAATGGCAAGGTTTACCAACAAGATTCTAAGGTTATTCTAATTGGAGGCGACGAGGTTGTTTTTGGTTCATCTGGAAAACATGCATATATTTTCATGCAGCTCACTAATGGTAATATAGCTGCTCAAGGCATTCCTTCAATTAGCATATTAGAAACCCAGAGCTCTCCGGTTAATGGGTTACATATTGAGGCAAGATCCAGGGACCCCACAGTTGATGGGGCATCTATATTAGCATCTATGTCAAATGTGCCAAATAACTTGTCACTACTTCCAGCATCTGCTAAAGCTGGTGGTGATCTGCAACAGGATGCTGATATGCCTTCTACTCCTTCTGGTTGCGGAGGGTCAGACGATCGTACTCCAGACACTGAGATGAAGGATAGTACTAATGTTAATGATGGTGACAAAGATATTGTTTCATTCCCTGACACTGCCAACGAAAACCCCAATCTTGATAACCTTGCATTGGACATGGATACTGAAACGGGAAAGGCCTCTGGGACTAGGTGGCCACCTCTTCTCCGAATGTTGGGTTCTGGTGCCAAATTTGATTTCAGTGGCAGCCTTTCAAAGATTCTTAATGAGCCAAGAGAACTTAGAGAACTCCAGGATTTTGATCCTGCAATTTCGCTGTCAACTAGGCGACAAGCATTTAGAGATAAACTGCAACAAGGAATTCTAAATCCTAATGATATTGAAGTCACATTTGAAAGTTTCCCATACTACCTAAGTGACACAACCAAAAATGTTCTGATTGCTTCCATCCACATTCATTTGAAGTGTAATAAGTTTGCAAAGTATGCCTCAGATCTCCCAACTGGGAGCCCACGTATACTACTATCTGGTCCTGCAGGATCAGAGATATATCAGGAAACTTTGGCAAAGGCACTTGCGAAACATTTTGGTGCTAGATTGCTAATTGTCGACTCTCTCGTCATGCCTGGTGGGCCAGCATCCCAGAATGCTGATTCTGTTAAAGAAGCAGCTAGGGCCGAAAGAGTTTCCATGTTCACTAAACGAGCTGCACAGGCTGCTGGATTAAGGCATAAGAAACCAACCTCCAGTGTTGAGGCTGAAATTACAGGTGGATCCACTCTAAGCTCGCAAGCTCTGCCAAAGCAGGAAACATCCACTGCATCCTCCAAAGGCATTACATTTAAACAAGGCATGCTATTTTTCTTTAAAATATCTATTCCTCCTGTTAATTTTTTTTATGTGTTGGTGAAATTTATCGGTGGTGCTGCGCTTTCTTCGCTGCATAATCCTCCTCTAAGGGGACCACAATATGGTTACAAAGGCAAAGTTGTTCTTCCTTTTGAAGAGAACGGGTCATCTAAAATTGGTGTTAGATTTGAGAAAACGATACCAGATGGCAATGATCTTGGTGGTCTTTGCGAAGAAGATCGTGGTTTTTTCTGTCCTGCTAATCATCTAATTCGCATTGATGCTTCGGGAGGTGATGATATTGACAAGCTTGCTATTAATGAACTTCTTGAGGTTGCATCAAATGAGAGTAAAAGTATGCCTCTAATATTGTTTATGAAAGATGTGGAGAAGGCAATGGTAGGTAATTCAGATGCATTTATTCACTTCAAGAGTAAACTTGAAAGTTTGCCAGAGAATGTTGTTATAATTGGCTCCCATACCCAGTTGGACAATCGTAAGGAAAAGTCCCATCCTGGTGGTCTTCTGTTTACGAAGTTCGGTTTCAGCCAAACAGCTTTGCTCGATCTTGCTTTTCCGGATAACCTTGGTAGGCTGCAAGATAGGAGCAAAGAAACCCCTAAATCATTGAAGAATCTTACTCGGATTTTTCCCAACAAGGTGACAATACAGCTACCTCAGGATGAAGGTCTACTTTCGGACTGGAAGCAGCAGTTGGATCGTGATGTTGAAACTCTGAAAGCACAGTCAAATATTGTTAGCATTCGCACAGTTCTTAACCGTATTAATCTGGATTGCCCCGACCTTGAAAGTCTGTCGGTTAAGGATCCTGCCCTTACAACTGAAAGTGTTGAAAAAATAATAGGCTGGGCTTTGAGTTATCACTCTATGCATTGTTCTGAGGCTGAAGTTAAAGATGGAAAACTTGTCATTTCTACTGAAAGTCTTAAATATGGACTGAACATTCTACAGGGCATTCAAAGTGAGAACAAAAGCACAAAGAAGTCACTGAAGGATGTGGTCACTGGAAATGAGTTTGAGAAAAAGCTTCTTGCTGATGTTATTCCACCGAGCGACATTGGGGTTACTTTTGATGACATCGGGGCCTTGGAAAATGTGAAGGACACACTGAAGGAGTTGGTGATGCTTCCTCTTCAGAGGCCTGAACTGTTTAGCAAAGGACAGCTGACTAAGCCTTGCAAAGGAATCTTGCTGTTTGGTCCCCCTGGTACTGGGAAAACTATGCTTGCGAAGGCTGTTGCAACTGAAGCTGGTGCAAACTTCATTAACATATCAATGTCAAGTATTACTTCAAAGTGGTTTGGGGAAGGAGAGAAGTACGTTAAAGCAGTGTTCTCGTTAGCTAGTAAAATTGCTCCTAGTGTTGTATTTGTTGACGAGGTTGACAGCATGTTAGGAAGACGTGAAAATCCTGGGGAACATGAGGCTATGCGTAAAATGAAAAACGAGTTCATGGTGAACTGGGATGGTCTACGTACAAAGGATAAAGAACGTGTATTGGTACTCGCTGCTACTAACAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTTCCGAGGAGGTTGATGGTTAACTTGCCAGATGCTCCAAACAGAGAAAAGATACTGAGAGTTATATTAGCCAAAGAAGATTTGGATCCTGACGTTGATTTGGAAGGAGCTGCCAGTATGACAGACGGGTATTCTGGAAGTGACCTAAAGAACCTTTGTGTTACTGCAGCTCACCGTCCTATCAGGGAAATCTTAGAAAAAGAAAAGAAGGAGAGAAGTTTAGCTTTGGAGGAGAGCAGACCTGTACCGTCGTTGTATTGCAGTGCTGACATCCGCCCTTTAAAGATGGAGGATTTTAAACATGCGCATGAACAGGTCTGTGCAAGTGTGTCATCTGAGTCGACAAATATGAGTGAGCTCCTCCAATGGAATGACTTGTATGGAGAAGGTGGATCAAGAAAGAAGAAATCGCTCAGCTATTTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002090 GO:0002092 GO:0003008 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007610 GO:0007611 GO:0007612 GO:0007613 GO:0008150 GO:0009893 GO:0010604 GO:0010646 GO:0010648 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0023051 GO:0023057 GO:0030100 GO:0031323 GO:0031325 GO:0032501 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044456 GO:0044459 GO:0044464 GO:0045202 GO:0045211 GO:0045807 GO:0048259 GO:0048260 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050804 GO:0050805 GO:0050877 GO:0050890 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051966 GO:0051967 GO:0060255 GO:0060627 GO:0065007 GO:0071944 GO:0097060 GO:0098590 GO:0098794 GO:0099177

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FHA

Protein Analysis

1250

Amino Acids

135.99

Weight (kDa)

6.31

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7751	PF24933	847 - 907	1.1e-25	Domain of unknown function (DUF7751)
AAA	PF00004	986 - 1116	8.8e-38	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	1139 - 1175	6.5e-12	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02890 AT1G02890 AT4G02480
fragaria_vesca	FvH4_2g25490 FvH4_2g25490 FvH4_2g25490
malus_domestica	MD03G1285800.v1.1 MD11G1305200.v1.1 MD11G1305300.v1.1 MD11G1305400.v1.1
prunus_persica	Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1
pyrus_communis	pycom03g22650 pycom11g26700 pycom11g26720
rosa_chinensis	RchiOBHm_Chr6g0293701
rosa_laevigata	RLG00000011931
rosa_roxburghii	Rroxscaffold_7G00173960
rosa_rugosa	Rorug06G0237500
rosa_samantha	Rh6AG350200 Rh6BG357700 Rh6CG364500 Rh6DG351400
rosa_wichuraiana	Rw6G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2216
AasI	GACNNNNNNGTC	1 cut(s)	1517
Acc16I	TGCGCA	1 cut(s)	3630
AccB1I	GGYRCC	1 cut(s)	1124
AccB7I	CCANNNNNTGG	1 cut(s)	1871
AccBSI	CCGCTC	1 cut(s)	117
AccI	GTMKAC	5 cut(s)	1417, 1509, 2440, 3241, 3665
AccIII	TCCGGA	2 cut(s)	169, 2326
AcoI	YGGCCR	2 cut(s)	454, 1094
AcsI	RAATTY	3 cut(s)	1130, 1260, 1811
AcuI	CTGAAG	6 cut(s)	353, 2676, 2780, 2888, 2900, 3036
AfaI	GTAC	8 cut(s)	502, 943, 970, 2980, 3089, 3247, 3273, 3570
AflII	CTTAAG	1 cut(s)	518
AflIII	ACRYGT	1 cut(s)	3262
AjiI	CACGTC	2 cut(s)	262, 3173
AjnI	CCWGG	6 cut(s)	782, 1191, 1525, 2263, 2974, 3181
AjuI	GAANNNNNNNTTGG	4 cut(s)	1121, 1153, 2447, 2479
Alw21I	GWGCWC	3 cut(s)	413, 749, 3684
Alw26I	GTCTC	1 cut(s)	305
AlwNI	CAGNNNCTG	3 cut(s)	382, 863, 953
Ama87I	CYCGRG	1 cut(s)	176
Aor13HI	TCCGGA	2 cut(s)	169, 2326
ApoI	RAATTY	3 cut(s)	1130, 1260, 1811
ArsI	GACNNNNNNTTYG	2 cut(s)	830, 862
AseI	ATTAAT	2 cut(s)	2067, 2535
AspLEI	GCGC	2 cut(s)	1831, 3631
AspS9I	GGNCC	9 cut(s)	140, 172, 787, 1430, 1532, 1575, 1862, 2853, 2969
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	9 cut(s)	539, 890, 998, 1819, 2054, 2422, 2902, 3238, 3488
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	6 cut(s)	140, 172, 787, 1430, 1862, 2969
AxyI	CCTNAGG	1 cut(s)	2427
BalI	TGGCCA	2 cut(s)	456, 1096
BamHI	GGATCC	3 cut(s)	1673, 2575, 3409
BanI	GGYRCC	1 cut(s)	1124
BanII	GRGCYC	4 cut(s)	253, 749, 1412, 3684
BbsI	GAAGAC	2 cut(s)	2264, 3175
Bbv12I	GWGCWC	3 cut(s)	413, 749, 3684
BceAI	ACGGC	3 cut(s)	121, 206, 244
BcgI	CGANNNNNNTGC	4 cut(s)	2450, 2484, 3087, 3121
BciT130I	CCWGG	6 cut(s)	784, 1193, 1527, 2265, 2976, 3183
BciVI	GTATCC	1 cut(s)	1054
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	6 cut(s)	1089, 1224, 1494, 1572, 3114, 3129
BfmI	CTRYAG	5 cut(s)	315, 543, 1434, 2717, 3489
BfrI	CTTAAG	1 cut(s)	518
BfuI	GTATCC	1 cut(s)	1054
BglI	GCCNNNNNGGC	1 cut(s)	1531
BglII	AGATCT	1 cut(s)	1393
BlpI	GCTNAGC	1 cut(s)	3737
BmcAI	AGTACT	2 cut(s)	502, 970
Bme1390I	CCNGG	7 cut(s)	525, 784, 1193, 1527, 2265, 2976, 3183
Bme18I	GGWCC	6 cut(s)	140, 172, 787, 1430, 1862, 2969
BmeT110I	CYCGRG	1 cut(s)	176
BmgBI	CACGTC	2 cut(s)	262, 3173
BmgT120I	GGNCC	9 cut(s)	140, 172, 787, 1430, 1532, 1575, 1862, 2853, 2969
BmrFI	CCNGG	7 cut(s)	525, 784, 1193, 1527, 2265, 2976, 3183
BmrI	ACTGGG	5 cut(s)	400, 1413, 2227, 2991, 3241
BmuI	ACTGGG	5 cut(s)	400, 1413, 2227, 2991, 3241
BpiI	GAAGAC	2 cut(s)	2264, 3175
BpmI	CTGGAG	3 cut(s)	930, 1175, 1630
Bpu1102I	GCTNAGC	1 cut(s)	3737
BpuEI	CTTGAG	2 cut(s)	693, 2099
BpuMI	CCSGG	1 cut(s)	525
BsaAI	YACGTR	2 cut(s)	1415, 3245
BsaBI	GATNNNNATC	2 cut(s)	1200, 3408
BsaJI	CCNNGG	7 cut(s)	285, 783, 2335, 2856, 2974, 3182, 3329
BsaWI	WCCGGW	3 cut(s)	169, 751, 2326
BsaXI	ACNNNNNCTCC	4 cut(s)	1089, 1119, 1399, 1429
Bse21I	CCTNAGG	1 cut(s)	2427
Bse3DI	GCAATG	2 cut(s)	1966, 2151
Bse8I	GATNNNNATC	2 cut(s)	1200, 3408
BseAI	TCCGGA	2 cut(s)	169, 2326
BseBI	CCWGG	6 cut(s)	784, 1193, 1527, 2265, 2976, 3183
BseDI	CCNNGG	7 cut(s)	285, 783, 2335, 2856, 2974, 3182, 3329
BseJI	GATNNNNATC	2 cut(s)	1200, 3408
BseMI	GCAATG	2 cut(s)	1966, 2151
BseMII	CTCAG	8 cut(s)	147, 945, 1404, 2441, 2640, 3371, 3651, 3751
BseRI	GAGGAG	6 cut(s)	42, 373, 1842, 3346, 3569, 3674
BseYI	CCCAGC	1 cut(s)	2616
BsgI	GTGCAG	1 cut(s)	1593
Bsh1285I	CGRYCG	1 cut(s)	940
BshNI	GGYRCC	1 cut(s)	1124
BsiEI	CGRYCG	1 cut(s)	940
BsiHKAI	GWGCWC	3 cut(s)	413, 749, 3684
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	4 cut(s)	170, 524, 752, 2327
BslFI	GGGAC	6 cut(s)	405, 800, 1099, 1875, 2242, 2955
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	6 cut(s)	405, 800, 1099, 1875, 2242, 2955
BsmI	GAATGC	5 cut(s)	473, 714, 1552, 2511, 2724
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	5 cut(s)	253, 413, 749, 1412, 3684
Bsp13I	TCCGGA	2 cut(s)	169, 2326
Bsp1720I	GCTNAGC	1 cut(s)	3737
BspCNI	CTCAG	8 cut(s)	148, 946, 1403, 2440, 2641, 3372, 3652, 3750
BspEI	TCCGGA	2 cut(s)	169, 2326
BspMAI	CTGCAG	4 cut(s)	319, 547, 1438, 3493
BspQI	GCTCTTC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	1124
BspTI	CTTAAG	1 cut(s)	518
BsrBI	CCGCTC	1 cut(s)	117
BsrDI	GCAATG	2 cut(s)	1966, 2151
BssECI	CCNNGG	7 cut(s)	285, 783, 2335, 2856, 2974, 3182, 3329
BssNAI	GTATAC	1 cut(s)	1418
BssT1I	CCWWGG	3 cut(s)	285, 2335, 2856
Bst1107I	GTATAC	1 cut(s)	1418
Bst2UI	CCWGG	6 cut(s)	784, 1193, 1527, 2265, 2976, 3183
Bst4CI	ACNGT	8 cut(s)	451, 796, 2496, 2521, 2531, 2919, 3500, 3573
Bst6I	CTCTTC	6 cut(s)	28, 329, 350, 1107, 1899, 2907
BstAFI	CTTAAG	1 cut(s)	518
BstAPI	GCANNNNNTGC	3 cut(s)	1385, 1616, 1696
BstBAI	YACGTR	2 cut(s)	1415, 3245
BstC8I	GCNNGC	7 cut(s)	122, 1536, 1688, 1692, 1754, 2061, 2997
BstENI	CCTNNNNNAGG	2 cut(s)	2949, 3305
BstHHI	GCGC	2 cut(s)	1831, 3631
BstMAI	GTCTC	1 cut(s)	305
BstMCI	CGRYCG	1 cut(s)	940
BstNI	CCWGG	6 cut(s)	784, 1193, 1527, 2265, 2976, 3183
BstNSI	RCATGY	4 cut(s)	668, 1756, 3163, 3629
BstSCI	CCNGG	7 cut(s)	523, 782, 1191, 1525, 2263, 2974, 3181
BstSFI	CTRYAG	5 cut(s)	315, 543, 1434, 2717, 3489
BstSNI	TACGTA	1 cut(s)	3245
BstV2I	GAAGAC	2 cut(s)	2264, 3175
BstX2I	RGATCY	6 cut(s)	487, 779, 1393, 1673, 2575, 3409
BstXI	CCANNNNNNTGG	1 cut(s)	2267
BstYI	RGATCY	6 cut(s)	487, 779, 1393, 1673, 2575, 3409
BstZ17I	GTATAC	1 cut(s)	1418
Bsu36I	CCTNAGG	1 cut(s)	2427
BsuI	GTATCC	1 cut(s)	1054
BtrI	CACGTC	2 cut(s)	262, 3173
BtsI	GCAGTG	4 cut(s)	1014, 1716, 3105, 3592
Cac8I	GCNNGC	7 cut(s)	122, 1536, 1688, 1692, 1754, 2061, 2997
CaiI	CAGNNNCTG	3 cut(s)	382, 863, 953
CfoI	GCGC	2 cut(s)	1831, 3631
Cfr13I	GGNCC	9 cut(s)	140, 172, 787, 1430, 1532, 1575, 1862, 2853, 2969
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	8 cut(s)	501, 942, 969, 2979, 3088, 3246, 3272, 3569
CviQI	GTAC	8 cut(s)	501, 942, 969, 2979, 3088, 3246, 3272, 3569
DraI	TTTAAA	4 cut(s)	1744, 1768, 3606, 3622
DrdI	GACNNNNNNGTC	1 cut(s)	1517
DseDI	GACNNNNNNGTC	1 cut(s)	1517
EaeI	YGGCCR	2 cut(s)	454, 1094
Eam1104I	CTCTTC	6 cut(s)	28, 329, 350, 1107, 1899, 2907
EarI	CTCTTC	6 cut(s)	28, 329, 350, 1107, 1899, 2907
EciI	GGCGGA	3 cut(s)	257, 281, 3587
Ecl136II	GAGCTC	2 cut(s)	747, 3682
Eco105I	TACGTA	1 cut(s)	3245
Eco130I	CCWWGG	3 cut(s)	285, 2335, 2856
Eco147I	AGGCCT	4 cut(s)	80, 1079, 2911, 3292
Eco24I	GRGCYC	4 cut(s)	253, 749, 1412, 3684
Eco47I	GGWCC	6 cut(s)	140, 172, 787, 1430, 1862, 2969
Eco53kI	GAGCTC	2 cut(s)	747, 3682
Eco57I	CTGAAG	6 cut(s)	353, 2676, 2780, 2888, 2900, 3036
Eco81I	CCTNAGG	1 cut(s)	2427
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	2 cut(s)	747, 3682
EcoNI	CCTNNNNNAGG	2 cut(s)	2949, 3305
EcoO109I	RGGNCCY	2 cut(s)	787, 2853
EcoRI	GAATTC	1 cut(s)	1260
EcoRII	CCWGG	6 cut(s)	782, 1191, 1525, 2263, 2974, 3181
EcoT14I	CCWWGG	3 cut(s)	285, 2335, 2856
EcoT22I	ATGCAT	3 cut(s)	670, 2167, 2643
EcoT38I	GRGCYC	4 cut(s)	253, 749, 1412, 3684
ErhI	CCWWGG	3 cut(s)	285, 2335, 2856
FalI	AAGNNNNNCTT	8 cut(s)	1878, 1910, 2427, 2459, 3043, 3075, 3532, 3564
FaqI	GGGAC	6 cut(s)	405, 800, 1099, 1875, 2242, 2955
FauI	CCCGC	1 cut(s)	429
FblI	GTMKAC	5 cut(s)	1417, 1509, 2440, 3241, 3665
FriOI	GRGCYC	4 cut(s)	253, 749, 1412, 3684
FspAI	RTGCGCAY	1 cut(s)	3630
FspBI	CTAG	6 cut(s)	1089, 1224, 1494, 1572, 3114, 3129
FspI	TGCGCA	1 cut(s)	3630
GlaI	GCGC	2 cut(s)	1830, 3630
GsaI	CCCAGC	1 cut(s)	2620
GsuI	CTGGAG	3 cut(s)	930, 1175, 1630
HapII	CCGG	4 cut(s)	170, 524, 752, 2327
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	2 cut(s)	1831, 3631
Hin6I	GCGC	2 cut(s)	1829, 3629
HinP1I	GCGC	2 cut(s)	1829, 3629
HincII	GTYRAC	8 cut(s)	226, 540, 1221, 1510, 3145, 3154, 3346, 3666
HindII	GTYRAC	8 cut(s)	226, 540, 1221, 1510, 3145, 3154, 3346, 3666
HindIII	AAGCTT	2 cut(s)	2057, 2795
HpaI	GTTAAC	2 cut(s)	226, 3346
HpaII	CCGG	4 cut(s)	170, 524, 752, 2327
HphI	GGTGA	9 cut(s)	539, 890, 998, 1819, 2054, 2422, 2902, 3238, 3488
Hpy99I	CGWCG	3 cut(s)	130, 638, 3577
HpyCH4III	ACNGT	8 cut(s)	451, 796, 2496, 2521, 2531, 2919, 3500, 3573
HpyCH4IV	ACGT	7 cut(s)	261, 1414, 3090, 3172, 3244, 3262, 3417
HpySE526I	ACGT	7 cut(s)	261, 1414, 3090, 3172, 3244, 3262, 3417
HspAI	GCGC	2 cut(s)	1829, 3629
KflI	GGGWCCC	1 cut(s)	787
Kpn2I	TCCGGA	2 cut(s)	169, 2326
KspAI	GTTAAC	2 cut(s)	226, 3346
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	9 cut(s)	114, 130, 1407, 2228, 2355, 3130, 3364, 3431, 3687
MaeI	CTAG	6 cut(s)	1089, 1224, 1494, 1572, 3114, 3129
MaeII	ACGT	7 cut(s)	261, 1414, 3090, 3172, 3244, 3262, 3417
MbiI	CCGCTC	1 cut(s)	117
MflI	RGATCY	6 cut(s)	487, 779, 1393, 1673, 2575, 3409
MhlI	GDGCHC	5 cut(s)	253, 413, 749, 1412, 3684
MlsI	TGGCCA	2 cut(s)	456, 1096
MluNI	TGGCCA	2 cut(s)	456, 1096
MlyI	GAGTC	3 cut(s)	167, 1505, 3671
MmeI	TCCRAC	3 cut(s)	123, 2217, 2445
Mox20I	TGGCCA	2 cut(s)	456, 1096
Mph1103I	ATGCAT	3 cut(s)	670, 2167, 2643
MroI	TCCGGA	2 cut(s)	169, 2326
MscI	TGGCCA	2 cut(s)	456, 1096
MslI	CAYNNNNRTG	5 cut(s)	956, 1488, 2265, 3044, 3630
Msp20I	TGGCCA	2 cut(s)	456, 1096
MspA1I	CMGCKG	2 cut(s)	206, 2935
MspCI	CTTAAG	1 cut(s)	518
MspI	CCGG	4 cut(s)	170, 524, 752, 2327
MspR9I	CCNGG	7 cut(s)	525, 784, 1193, 1527, 2265, 2976, 3183
Mva1269I	GAATGC	5 cut(s)	473, 714, 1552, 2511, 2724
MvaI	CCWGG	6 cut(s)	784, 1193, 1527, 2265, 2976, 3183
NciI	CCSGG	1 cut(s)	525
NmuCI	GTSAC	8 cut(s)	846, 986, 1285, 1316, 2410, 2754, 2770, 3464
NsbI	TGCGCA	1 cut(s)	3630
NsiI	ATGCAT	3 cut(s)	670, 2167, 2643
NspI	RCATGY	4 cut(s)	668, 1756, 3163, 3629
PaeI	GCATGC	1 cut(s)	1756
PaeR7I	CTCGAG	1 cut(s)	176
PceI	AGGCCT	4 cut(s)	80, 1079, 2911, 3292
PciSI	GCTCTTC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	1515
PctI	GAATGC	5 cut(s)	473, 714, 1552, 2511, 2724
PfeI	GAWTC	8 cut(s)	152, 209, 373, 608, 1159, 1553, 2383, 2955
PflMI	CCANNNNNTGG	1 cut(s)	1871
PfoI	TCCNGGA	1 cut(s)	1191
Ple19I	CGATCG	1 cut(s)	940
PleI	GAGTC	3 cut(s)	166, 1505, 3670
PpsI	GAGTC	3 cut(s)	166, 1505, 3670
Ppu21I	YACGTR	2 cut(s)	1415, 3245
PpuMI	RGGWCCY	1 cut(s)	787
PshBI	ATTAAT	2 cut(s)	2067, 2535
PsiI	TTATAA	1 cut(s)	2216
Psp124BI	GAGCTC	2 cut(s)	749, 3684
Psp5II	RGGWCCY	1 cut(s)	787
Psp6I	CCWGG	6 cut(s)	782, 1191, 1525, 2263, 2974, 3181
PspFI	CCCAGC	1 cut(s)	2616
PspGI	CCWGG	6 cut(s)	782, 1191, 1525, 2263, 2974, 3181
PspPI	GGNCC	9 cut(s)	140, 172, 787, 1430, 1532, 1575, 1862, 2853, 2969
PspPPI	RGGWCCY	1 cut(s)	787
PspXI	VCTCGAGB	1 cut(s)	176
PstI	CTGCAG	4 cut(s)	319, 547, 1438, 3493
PstNI	CAGNNNCTG	3 cut(s)	382, 863, 953
PsuI	RGATCY	6 cut(s)	487, 779, 1393, 1673, 2575, 3409
PvuI	CGATCG	1 cut(s)	940
PvuII	CAGCTG	2 cut(s)	206, 2935
RsaI	GTAC	8 cut(s)	502, 943, 970, 2980, 3089, 3247, 3273, 3570
RsaNI	GTAC	8 cut(s)	501, 942, 969, 2979, 3088, 3246, 3272, 3569
RseI	CAYNNNNRTG	5 cut(s)	956, 1488, 2265, 3044, 3630
SacI	GAGCTC	2 cut(s)	749, 3684
SalI	GTCGAC	2 cut(s)	1508, 3664
SapI	GCTCTTC	1 cut(s)	28
Sau96I	GGNCC	9 cut(s)	140, 172, 787, 1430, 1532, 1575, 1862, 2853, 2969
SbfI	CCTGCAGG	1 cut(s)	1438
ScaI	AGTACT	2 cut(s)	502, 970
SchI	GAGTC	3 cut(s)	167, 1505, 3671
ScrFI	CCNGG	7 cut(s)	525, 784, 1193, 1527, 2265, 2976, 3183
SdaI	CCTGCAGG	1 cut(s)	1438
SduI	GDGCHC	5 cut(s)	253, 413, 749, 1412, 3684
SfcI	CTRYAG	5 cut(s)	315, 543, 1434, 2717, 3489
Sfr274I	CTCGAG	1 cut(s)	176
SinI	GGWCC	6 cut(s)	140, 172, 787, 1430, 1862, 2969
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	5 cut(s)	956, 1488, 2265, 3044, 3630
SmlI	CTYRAG	4 cut(s)	176, 518, 708, 2078
SmoI	CTYRAG	4 cut(s)	176, 518, 708, 2078
SnaBI	TACGTA	1 cut(s)	3245
SphI	GCATGC	1 cut(s)	1756
Sse8387I	CCTGCAGG	1 cut(s)	1438
SseBI	AGGCCT	4 cut(s)	80, 1079, 2911, 3292
SspI	AATATT	2 cut(s)	2118, 2503
SspMI	CTAG	6 cut(s)	1089, 1224, 1494, 1572, 3114, 3129
SstI	GAGCTC	2 cut(s)	749, 3684
StuI	AGGCCT	4 cut(s)	80, 1079, 2911, 3292
StyD4I	CCNGG	7 cut(s)	523, 782, 1191, 1525, 2263, 2974, 3181
StyI	CCWWGG	3 cut(s)	285, 2335, 2856
TaaI	ACNGT	8 cut(s)	451, 796, 2496, 2521, 2531, 2919, 3500, 3573
TaiI	ACGT	7 cut(s)	264, 1417, 3093, 3175, 3247, 3265, 3420
TaqI	TCGA	5 cut(s)	177, 371, 1509, 2313, 3665
TatI	WGTACW	2 cut(s)	500, 968
TauI	GCSGC	5 cut(s)	120, 242, 281, 284, 298
TfiI	GAWTC	8 cut(s)	152, 209, 373, 608, 1159, 1553, 2383, 2955
TseFI	GTSAC	8 cut(s)	846, 986, 1285, 1316, 2410, 2754, 2770, 3464
Tsp45I	GTSAC	8 cut(s)	846, 986, 1285, 1316, 2410, 2754, 2770, 3464
TspGWI	ACGGA	2 cut(s)	143, 484
Van91I	CCANNNNNTGG	1 cut(s)	1871
Vha464I	CTTAAG	1 cut(s)	518
VpaK11BI	GGWCC	6 cut(s)	140, 172, 787, 1430, 1862, 2969
VspI	ATTAAT	2 cut(s)	2067, 2535
XagI	CCTNNNNNAGG	2 cut(s)	2949, 3305
XapI	RAATTY	3 cut(s)	1130, 1260, 1811
XceI	RCATGY	4 cut(s)	668, 1756, 3163, 3629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3403
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	5 cut(s)	1417, 1509, 2440, 3241, 3665
XspI	CTAG	6 cut(s)	1089, 1224, 1494, 1572, 3114, 3129
ZrmI	AGTACT	2 cut(s)	502, 970
Zsp2I	ATGCAT	3 cut(s)	670, 2167, 2643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.