Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006487

Physical Location & Seq

Genomic Coordinates Forward (+)

55240728 .. 55250488

Gene Structure 9761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG364500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3438 bp

ATGGTTGAAACCAGACGCAGCTCTTCTTCCAAACGCACCCTATCGGCCTCTCCTCCCCCCAATCCCAAACGCTCAAAGGCCTCTGATGCTTCGTCATCCAACAACGGCGTTCGGAGCGGCACGCCGACGGAGCCTCTGGGTCCGATAAAGGAATCTGAGTCGCAATCTCCGGACCTCGAGCTGCGATCCCCTGATCCGCAGACAGCTGATTCCTTGAAGGCCGTTAACGGCTCTGATGCGGCGGAGAGAGCCCCTGATGACGTGGCGGAAGCGGAGGCCGCCGCCTTGGGGTCGCCGCAGCCTTTGGGCGAGACTGCAGTTCGTTCTGGGCTGAAGAGGACTAAGAAGGTTCCGAAGAGGAGTGCGAAATCGAATCAGAAACTGGCGTGGGGACAGCTTCTTTCCCAGTGCTCTAAGAACCCGCATCAGTTTCTTTGTGATACTTTCACTGTTGGCCAAAGTCGTGAATGCAATTTATGTCTTAAAGATCCATCCGTTAGTACTACACTCTGTAAACTTAAGCCGGGTGAAGGTTCGTCAACTGCAGAAATGGAAATTACAGGGGGTAAAGGTTATGTTCAAGTTAATGGCAAGGTTTACCAACAAGATTCTAAGGTTATTCTAATTGGAGGCGACGAGGTTGTTTTTGGTTCATCTGGAAAACATGCATATATTTTCATGCAGCTCACTAATGGTAATATAGCTGCTCAAGGCATTCCTTCAATTAGCATATTAGAAACCCAGAGCTCTCCGGTTAATGGGTTACATATTGAGGCAAGATCCAGGGACCCCACAGTTGATGGGGCATCTATATTAGCATCTATGTCAAATGTGCCAAATAACTTGTCACTACTTCCAGCATCTGCTAAAGCTGGTGGTGATCTGCAACAGGATGCTGATATGCCTTCTACTCCTTCTGGTTGCGGAGGGTCAGACGATCGTACTCCAGACACTGAGATGAAGGATAGTACTAATGTTAATGATGGTGACAAAGATATTGTTTCATTCCCTGACACTGCCAACGAAAACCCCAATCTTGATAACCTTGCATTGGACATGGATACTGAAACGGGAAAGGCCTCTGGGACTAGGTGGCCACCTCTTCTCCGAATGTTGGGTTCTGGTGCCAAATTTGATTTCAGTGGCAGCCTTTCAAAGATTCTTAATGAGCCAAGAGAACTTAGAGAACTCCAGGATTTTGATCCTGCAATTTCGCTGTCAACTAGGCGACAAGCATTTAGAGATAAACTGCAACAAGGAATTCTAAATCCTAATGATATTGAAGTCACATTTGAAAGTTTCCCATACTACCTAAGTGACACAACCAAAAATGTTCTGATTGCTTCCATCCACATTCATTTGAAGTGTAATAAGTTTGCAAAGTATGCCTCAGATCTCCCAACTGGGAGCCCACGTATACTACTATCTGGTCCTGCAGGATCAGAGATATATCAGGAAACTTTGGCAAAGGCACTTGCGAAACATTTTGGTGCTAGATTGCTAATTGTCGACTCTCTCGTCATGCCTGGTGGGCCAGCATCCCAGAATGCTGATTCTGTTAAAGAAGCAGCTAGGGCCGAAAGAGTTTCCATGTTCACTAAACGAGCTGCACAGGCTGCTGGATTAAGGCATAAGAAACCAACCTCCAGTGTTGAGGCTGAAATTACAGGTGGATCCACTCTAAGCTCGCAAGCTCTGCCAAAGCAGGAAACATCCACTGCATCCTCCAAAGGCATTACATTTAAACAAGGTGATAGGGTGAAATTTGTCGGTGGTGCTGCGCTTTCTTCGCTGCATAATCCTCCTCTAAGGGGACCACAATATGGTTACAAAGGCAAAGTTGTTCTTCCTTTTGAAGAGAACGGGTCATCTAAAATTGGTGTTAGATTTGAGAAAACGATACCAGATGGCAATGATCTTGGTGGTCTTTGCGAAGAAGATCGTGGTTTTTTCTGTCCTGCTAATCATCTAATTCGCATTGATGCTTCGGGAGGTGATGATATTGACAAGCTTGCTATTAATGAACTTCTTGAGGTTGCATCAAATGAGAGTAAAAGTATGCCTCTAATATTGTTTATGAAAGATGTGGAGAAGGCAATGGTAGGTAATTCAGATGCATTTATTCACTTCAAGAGTAAACTTGAAAGTTTGCCAGAGAATGTTGTTATAATTGGCTCCCATACCCAGTTGGACAATCGTAAGGAAAAGTCCCATCCTGGTGGTCTTCTGTTTACGAAGTTCGGTTTCAGCCAAACAGCTTTGCTCGATCTTGCTTTTCCGGATAACCTTGGTAGGCTGCAAGATAGGAGCAAAGAAACCCCTAAATCATTGAAGAATCTTACTCGGATTTTTCCCAACAAGGTGACAATACAGCTACCTCAGGATGAAGGTCTACTTTCGGACTGGAAGCAGCAGTTGGATCGTGATGTTGAAACTCTGAAAGCACAGTCAAATATTGTTAGCATTCGCACAGTTCTTAACCGTATTAATCTGGATTGCCCCGACCTTGAAAGTCTGTCGGTTAAGGATCCTGCCCTTACAACTGAAAGTGTTGAAAAAATAATAGGCTGGGCTTTGAGTTATCACTCTATGCATTGTTCTGAGGCTGAAGTTAAAGATGGAAAACTTGTCATTTCTACTGAAAGTCTTAAATATGGACTGAACATTCTACAGGGCATTCAAAGTGAGAACAAAAGCACAAAGAAGTCACTGAAGGATGTGGTCACTGGAAATGAGTTTGAGAAAAAGCTTCTTGCTGATGTTATTCCACCGAGCGACATTGGGGTTACTTTTGATGACATCGGGGCCTTGGAAAATGTGAAGGACACACTGAAGGAGTTGGTGATGCTTCCTCTTCAGAGGCCTGAACTGTTTAGCAAAGGACAGCTGACTAAGCCTTGCAAAGGAATCTTGCTGTTTGGTCCCCCTGGTACTGGGAAAACTATGCTTGCGAAGGCTGTTGCAACTGAAGCTGGTGCAAACTTCATTAACATATCAATGTCAAGTATTACTTCAAAGTGGTTTGGGGAAGGAGAGAAGTACGTTAAAGCAGTGTTCTCGTTAGCTAGTAAAATTGCTCCTAGTGTTGTATTTGTTGACGAGGTTGACAGCATGTTAGGAAGACGTGAAAATCCTGGGGAACATGAGGCTATGCGTAAAATGAAAAACGAGTTCATGGTGAACTGGGATGGTCTACGTACAAAGGATAAAGAACGTGTATTGGTACTCGCTGCTACTAACAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTTCCGAGGAGGTTGATGGTTAACTTGCCAGATGCTCCAAACAGAGAAAAGATACTGAGAGTTATATTAGCCAAAGAAGATTTGGATCCTGACGTTGATTTGGAAGGAGCTGCCAGTATGACAGACGGGTATTCTGGAAGTGACCTAAAGGTTGCCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002090 GO:0002092 GO:0003008 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007610 GO:0007611 GO:0007612 GO:0007613 GO:0008150 GO:0009893 GO:0010604 GO:0010646 GO:0010648 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0023051 GO:0023057 GO:0030100 GO:0031323 GO:0031325 GO:0032501 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044456 GO:0044459 GO:0044464 GO:0045202 GO:0045211 GO:0045807 GO:0048259 GO:0048260 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050804 GO:0050805 GO:0050877 GO:0050890 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051966 GO:0051967 GO:0060255 GO:0060627 GO:0065007 GO:0071944 GO:0097060 GO:0098590 GO:0098794 GO:0099177

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FHA

Protein Analysis

1145

Amino Acids

123.86

Weight (kDa)

6.14

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7751	PF24933	831 - 891	9.9e-26	Domain of unknown function (DUF7751)
AAA	PF00004	970 - 1100	7.8e-38	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02890 AT1G02890 AT4G02480
fragaria_vesca	FvH4_2g25490 FvH4_2g25490 FvH4_2g25490
malus_domestica	MD03G1285800.v1.1 MD11G1305200.v1.1 MD11G1305300.v1.1 MD11G1305400.v1.1
prunus_persica	Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1 Prupe.8G259000_v2.0.a1
pyrus_communis	pycom03g22650 pycom11g26700 pycom11g26720
rosa_chinensis	RchiOBHm_Chr6g0293701
rosa_laevigata	RLG00000011931
rosa_roxburghii	Rroxscaffold_7G00173960
rosa_rugosa	Rorug06G0237500
rosa_samantha	Rh6AG350200 Rh6BG357700 Rh6CG364500 Rh6DG351400
rosa_wichuraiana	Rw6G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2168
AasI	GACNNNNNNGTC	1 cut(s)	1517
AccB1I	GGYRCC	1 cut(s)	1124
AccB7I	CCANNNNNTGG	1 cut(s)	1823
AccBSI	CCGCTC	1 cut(s)	117
AccI	GTMKAC	4 cut(s)	1417, 1509, 2392, 3193
AccIII	TCCGGA	2 cut(s)	169, 2278
AcoI	YGGCCR	2 cut(s)	454, 1094
AcsI	RAATTY	3 cut(s)	1130, 1260, 1763
AcuI	CTGAAG	6 cut(s)	353, 2628, 2732, 2840, 2852, 2988
AfaI	GTAC	7 cut(s)	502, 943, 970, 2932, 3041, 3199, 3225
AflII	CTTAAG	1 cut(s)	518
AflIII	ACRYGT	1 cut(s)	3214
AjiI	CACGTC	2 cut(s)	262, 3125
AjnI	CCWGG	6 cut(s)	782, 1191, 1525, 2215, 2926, 3133
AjuI	GAANNNNNNNTTGG	4 cut(s)	1121, 1153, 2399, 2431
Alw21I	GWGCWC	2 cut(s)	413, 749
Alw26I	GTCTC	1 cut(s)	305
AlwNI	CAGNNNCTG	3 cut(s)	382, 863, 953
Ama87I	CYCGRG	1 cut(s)	176
Aor13HI	TCCGGA	2 cut(s)	169, 2278
ApoI	RAATTY	3 cut(s)	1130, 1260, 1763
ArsI	GACNNNNNNTTYG	2 cut(s)	830, 862
AseI	ATTAAT	2 cut(s)	2019, 2487
AspLEI	GCGC	1 cut(s)	1783
AspS9I	GGNCC	9 cut(s)	140, 172, 787, 1430, 1532, 1575, 1814, 2805, 2921
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	9 cut(s)	539, 890, 998, 1763, 1771, 2006, 2374, 2854, 3190
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	6 cut(s)	140, 172, 787, 1430, 1814, 2921
AxyI	CCTNAGG	1 cut(s)	2379
BalI	TGGCCA	2 cut(s)	456, 1096
BamHI	GGATCC	3 cut(s)	1673, 2527, 3361
BanI	GGYRCC	1 cut(s)	1124
BanII	GRGCYC	3 cut(s)	253, 749, 1412
BbsI	GAAGAC	2 cut(s)	2216, 3127
Bbv12I	GWGCWC	2 cut(s)	413, 749
BccI	CCATC	9 cut(s)	499, 794, 977, 1355, 1901, 2220, 2612, 3182, 3286
BceAI	ACGGC	3 cut(s)	121, 206, 244
BcgI	CGANNNNNNTGC	4 cut(s)	2402, 2436, 3039, 3073
BciT130I	CCWGG	6 cut(s)	784, 1193, 1527, 2217, 2928, 3135
BciVI	GTATCC	1 cut(s)	1054
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	6 cut(s)	1089, 1224, 1494, 1572, 3066, 3081
BfmI	CTRYAG	4 cut(s)	315, 543, 1434, 2669
BfrI	CTTAAG	1 cut(s)	518
BfuI	GTATCC	1 cut(s)	1054
BglI	GCCNNNNNGGC	1 cut(s)	1531
BglII	AGATCT	1 cut(s)	1393
BmcAI	AGTACT	2 cut(s)	502, 970
Bme1390I	CCNGG	7 cut(s)	525, 784, 1193, 1527, 2217, 2928, 3135
Bme18I	GGWCC	6 cut(s)	140, 172, 787, 1430, 1814, 2921
BmeT110I	CYCGRG	1 cut(s)	176
BmgBI	CACGTC	2 cut(s)	262, 3125
BmgT120I	GGNCC	9 cut(s)	140, 172, 787, 1430, 1532, 1575, 1814, 2805, 2921
BmrFI	CCNGG	7 cut(s)	525, 784, 1193, 1527, 2217, 2928, 3135
BmrI	ACTGGG	5 cut(s)	400, 1413, 2179, 2943, 3193
BmuI	ACTGGG	5 cut(s)	400, 1413, 2179, 2943, 3193
BpiI	GAAGAC	2 cut(s)	2216, 3127
BpmI	CTGGAG	3 cut(s)	930, 1175, 1630
BpuEI	CTTGAG	2 cut(s)	693, 2051
BpuMI	CCSGG	1 cut(s)	525
BsaAI	YACGTR	2 cut(s)	1415, 3197
BsaBI	GATNNNNATC	2 cut(s)	1200, 3360
BsaJI	CCNNGG	7 cut(s)	285, 783, 2287, 2808, 2926, 3134, 3281
BsaWI	WCCGGW	3 cut(s)	169, 751, 2278
BsaXI	ACNNNNNCTCC	4 cut(s)	1089, 1119, 1399, 1429
Bse21I	CCTNAGG	1 cut(s)	2379
Bse3DI	GCAATG	2 cut(s)	1918, 2103
Bse8I	GATNNNNATC	2 cut(s)	1200, 3360
BseAI	TCCGGA	2 cut(s)	169, 2278
BseBI	CCWGG	6 cut(s)	784, 1193, 1527, 2217, 2928, 3135
BseDI	CCNNGG	7 cut(s)	285, 783, 2287, 2808, 2926, 3134, 3281
BseJI	GATNNNNATC	2 cut(s)	1200, 3360
BseMI	GCAATG	2 cut(s)	1918, 2103
BseMII	CTCAG	6 cut(s)	147, 945, 1404, 2393, 2592, 3323
BseRI	GAGGAG	4 cut(s)	42, 373, 1794, 3298
BseYI	CCCAGC	1 cut(s)	2568
BsgI	GTGCAG	1 cut(s)	1593
Bsh1285I	CGRYCG	1 cut(s)	940
BshNI	GGYRCC	1 cut(s)	1124
BsiEI	CGRYCG	1 cut(s)	940
BsiHKAI	GWGCWC	2 cut(s)	413, 749
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	4 cut(s)	170, 524, 752, 2279
BslFI	GGGAC	6 cut(s)	405, 800, 1099, 1827, 2194, 2907
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	6 cut(s)	405, 800, 1099, 1827, 2194, 2907
BsmI	GAATGC	5 cut(s)	473, 714, 1552, 2463, 2676
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	4 cut(s)	253, 413, 749, 1412
Bsp13I	TCCGGA	2 cut(s)	169, 2278
BspCNI	CTCAG	6 cut(s)	148, 946, 1403, 2392, 2593, 3324
BspEI	TCCGGA	2 cut(s)	169, 2278
BspMAI	CTGCAG	3 cut(s)	319, 547, 1438
BspQI	GCTCTTC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	1124
BspTI	CTTAAG	1 cut(s)	518
BsrBI	CCGCTC	1 cut(s)	117
BsrDI	GCAATG	2 cut(s)	1918, 2103
BssECI	CCNNGG	7 cut(s)	285, 783, 2287, 2808, 2926, 3134, 3281
BssNAI	GTATAC	1 cut(s)	1418
BssT1I	CCWWGG	3 cut(s)	285, 2287, 2808
Bst1107I	GTATAC	1 cut(s)	1418
Bst2UI	CCWGG	6 cut(s)	784, 1193, 1527, 2217, 2928, 3135
Bst4CI	ACNGT	6 cut(s)	451, 796, 2448, 2473, 2483, 2871
Bst6I	CTCTTC	6 cut(s)	28, 329, 350, 1107, 1851, 2859
BstAFI	CTTAAG	1 cut(s)	518
BstAPI	GCANNNNNTGC	3 cut(s)	1385, 1616, 1696
BstBAI	YACGTR	2 cut(s)	1415, 3197
BstC8I	GCNNGC	6 cut(s)	122, 1536, 1688, 1692, 2013, 2949
BstENI	CCTNNNNNAGG	2 cut(s)	2901, 3257
BstHHI	GCGC	1 cut(s)	1783
BstMAI	GTCTC	1 cut(s)	305
BstMCI	CGRYCG	1 cut(s)	940
BstNI	CCWGG	6 cut(s)	784, 1193, 1527, 2217, 2928, 3135
BstNSI	RCATGY	2 cut(s)	668, 3115
BstSCI	CCNGG	7 cut(s)	523, 782, 1191, 1525, 2215, 2926, 3133
BstSFI	CTRYAG	4 cut(s)	315, 543, 1434, 2669
BstSNI	TACGTA	1 cut(s)	3197
BstV2I	GAAGAC	2 cut(s)	2216, 3127
BstX2I	RGATCY	6 cut(s)	487, 779, 1393, 1673, 2527, 3361
BstXI	CCANNNNNNTGG	1 cut(s)	2219
BstYI	RGATCY	6 cut(s)	487, 779, 1393, 1673, 2527, 3361
BstZ17I	GTATAC	1 cut(s)	1418
Bsu36I	CCTNAGG	1 cut(s)	2379
BsuI	GTATCC	1 cut(s)	1054
BtrI	CACGTC	2 cut(s)	262, 3125
BtsI	GCAGTG	3 cut(s)	1014, 1716, 3057
Cac8I	GCNNGC	6 cut(s)	122, 1536, 1688, 1692, 2013, 2949
CaiI	CAGNNNCTG	3 cut(s)	382, 863, 953
CfoI	GCGC	1 cut(s)	1783
Cfr13I	GGNCC	9 cut(s)	140, 172, 787, 1430, 1532, 1575, 1814, 2805, 2921
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	7 cut(s)	501, 942, 969, 2931, 3040, 3198, 3224
CviAII	CATG	8 cut(s)	665, 679, 1057, 1522, 1591, 3112, 3143, 3175
CviQI	GTAC	7 cut(s)	501, 942, 969, 2931, 3040, 3198, 3224
DraI	TTTAAA	1 cut(s)	1744
DrdI	GACNNNNNNGTC	1 cut(s)	1517
DseDI	GACNNNNNNGTC	1 cut(s)	1517
EaeI	YGGCCR	2 cut(s)	454, 1094
Eam1104I	CTCTTC	6 cut(s)	28, 329, 350, 1107, 1851, 2859
EarI	CTCTTC	6 cut(s)	28, 329, 350, 1107, 1851, 2859
EciI	GGCGGA	2 cut(s)	257, 281
Ecl136II	GAGCTC	1 cut(s)	747
Eco105I	TACGTA	1 cut(s)	3197
Eco130I	CCWWGG	3 cut(s)	285, 2287, 2808
Eco147I	AGGCCT	4 cut(s)	80, 1079, 2863, 3244
Eco24I	GRGCYC	3 cut(s)	253, 749, 1412
Eco47I	GGWCC	6 cut(s)	140, 172, 787, 1430, 1814, 2921
Eco53kI	GAGCTC	1 cut(s)	747
Eco57I	CTGAAG	6 cut(s)	353, 2628, 2732, 2840, 2852, 2988
Eco81I	CCTNAGG	1 cut(s)	2379
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	747
EcoNI	CCTNNNNNAGG	2 cut(s)	2901, 3257
EcoO109I	RGGNCCY	2 cut(s)	787, 2805
EcoRI	GAATTC	1 cut(s)	1260
EcoRII	CCWGG	6 cut(s)	782, 1191, 1525, 2215, 2926, 3133
EcoT14I	CCWWGG	3 cut(s)	285, 2287, 2808
EcoT22I	ATGCAT	3 cut(s)	670, 2119, 2595
EcoT38I	GRGCYC	3 cut(s)	253, 749, 1412
ErhI	CCWWGG	3 cut(s)	285, 2287, 2808
FaeI	CATG	8 cut(s)	668, 682, 1060, 1525, 1594, 3115, 3146, 3178
FalI	AAGNNNNNCTT	6 cut(s)	1830, 1862, 2379, 2411, 2995, 3027
FaqI	GGGAC	6 cut(s)	405, 800, 1099, 1827, 2194, 2907
FatI	CATG	8 cut(s)	664, 678, 1056, 1521, 1590, 3111, 3142, 3174
FauI	CCCGC	1 cut(s)	429
FblI	GTMKAC	4 cut(s)	1417, 1509, 2392, 3193
FriOI	GRGCYC	3 cut(s)	253, 749, 1412
FspBI	CTAG	6 cut(s)	1089, 1224, 1494, 1572, 3066, 3081
GlaI	GCGC	1 cut(s)	1782
GsaI	CCCAGC	1 cut(s)	2572
GsuI	CTGGAG	3 cut(s)	930, 1175, 1630
HapII	CCGG	4 cut(s)	170, 524, 752, 2279
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	1783
Hin1II	CATG	8 cut(s)	668, 682, 1060, 1525, 1594, 3115, 3146, 3178
Hin6I	GCGC	1 cut(s)	1781
HinP1I	GCGC	1 cut(s)	1781
HincII	GTYRAC	7 cut(s)	226, 540, 1221, 1510, 3097, 3106, 3298
HindII	GTYRAC	7 cut(s)	226, 540, 1221, 1510, 3097, 3106, 3298
HindIII	AAGCTT	2 cut(s)	2009, 2747
HpaI	GTTAAC	2 cut(s)	226, 3298
HpaII	CCGG	4 cut(s)	170, 524, 752, 2279
HphI	GGTGA	9 cut(s)	539, 890, 998, 1763, 1771, 2006, 2374, 2854, 3190
Hpy99I	CGWCG	2 cut(s)	130, 638
HpyCH4III	ACNGT	6 cut(s)	451, 796, 2448, 2473, 2483, 2871
HpyCH4IV	ACGT	7 cut(s)	261, 1414, 3042, 3124, 3196, 3214, 3369
HpySE526I	ACGT	7 cut(s)	261, 1414, 3042, 3124, 3196, 3214, 3369
Hsp92II	CATG	8 cut(s)	668, 682, 1060, 1525, 1594, 3115, 3146, 3178
HspAI	GCGC	1 cut(s)	1781
KflI	GGGWCCC	1 cut(s)	787
Kpn2I	TCCGGA	2 cut(s)	169, 2278
KspAI	GTTAAC	2 cut(s)	226, 3298
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	8 cut(s)	114, 130, 1407, 2180, 2307, 3082, 3316, 3383
MaeI	CTAG	6 cut(s)	1089, 1224, 1494, 1572, 3066, 3081
MaeII	ACGT	7 cut(s)	261, 1414, 3042, 3124, 3196, 3214, 3369
MbiI	CCGCTC	1 cut(s)	117
MflI	RGATCY	6 cut(s)	487, 779, 1393, 1673, 2527, 3361
MhlI	GDGCHC	4 cut(s)	253, 413, 749, 1412
MlsI	TGGCCA	2 cut(s)	456, 1096
MluNI	TGGCCA	2 cut(s)	456, 1096
MlyI	GAGTC	2 cut(s)	167, 1505
MmeI	TCCRAC	3 cut(s)	123, 2169, 2397
Mox20I	TGGCCA	2 cut(s)	456, 1096
Mph1103I	ATGCAT	3 cut(s)	670, 2119, 2595
MroI	TCCGGA	2 cut(s)	169, 2278
MscI	TGGCCA	2 cut(s)	456, 1096
MslI	CAYNNNNRTG	4 cut(s)	956, 1488, 2217, 2996
Msp20I	TGGCCA	2 cut(s)	456, 1096
MspA1I	CMGCKG	2 cut(s)	206, 2887
MspCI	CTTAAG	1 cut(s)	518
MspI	CCGG	4 cut(s)	170, 524, 752, 2279
MspR9I	CCNGG	7 cut(s)	525, 784, 1193, 1527, 2217, 2928, 3135
Mva1269I	GAATGC	5 cut(s)	473, 714, 1552, 2463, 2676
MvaI	CCWGG	6 cut(s)	784, 1193, 1527, 2217, 2928, 3135
NciI	CCSGG	1 cut(s)	525
NlaIII	CATG	8 cut(s)	668, 682, 1060, 1525, 1594, 3115, 3146, 3178
NmuCI	GTSAC	8 cut(s)	846, 986, 1285, 1316, 2362, 2706, 2722, 3416
NsiI	ATGCAT	3 cut(s)	670, 2119, 2595
NspI	RCATGY	2 cut(s)	668, 3115
PaeR7I	CTCGAG	1 cut(s)	176
PceI	AGGCCT	4 cut(s)	80, 1079, 2863, 3244
PciSI	GCTCTTC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	1515
PctI	GAATGC	5 cut(s)	473, 714, 1552, 2463, 2676
PfeI	GAWTC	8 cut(s)	152, 209, 373, 608, 1159, 1553, 2335, 2907
PflMI	CCANNNNNTGG	1 cut(s)	1823
PfoI	TCCNGGA	1 cut(s)	1191
Ple19I	CGATCG	1 cut(s)	940
PleI	GAGTC	2 cut(s)	166, 1505
PpsI	GAGTC	2 cut(s)	166, 1505
Ppu21I	YACGTR	2 cut(s)	1415, 3197
PpuMI	RGGWCCY	1 cut(s)	787
PshBI	ATTAAT	2 cut(s)	2019, 2487
PsiI	TTATAA	1 cut(s)	2168
Psp124BI	GAGCTC	1 cut(s)	749
Psp5II	RGGWCCY	1 cut(s)	787
Psp6I	CCWGG	6 cut(s)	782, 1191, 1525, 2215, 2926, 3133
PspFI	CCCAGC	1 cut(s)	2568
PspGI	CCWGG	6 cut(s)	782, 1191, 1525, 2215, 2926, 3133
PspPI	GGNCC	9 cut(s)	140, 172, 787, 1430, 1532, 1575, 1814, 2805, 2921
PspPPI	RGGWCCY	1 cut(s)	787
PspXI	VCTCGAGB	1 cut(s)	176
PstI	CTGCAG	3 cut(s)	319, 547, 1438
PstNI	CAGNNNCTG	3 cut(s)	382, 863, 953
PsuI	RGATCY	6 cut(s)	487, 779, 1393, 1673, 2527, 3361
PvuI	CGATCG	1 cut(s)	940
PvuII	CAGCTG	2 cut(s)	206, 2887
RsaI	GTAC	7 cut(s)	502, 943, 970, 2932, 3041, 3199, 3225
RsaNI	GTAC	7 cut(s)	501, 942, 969, 2931, 3040, 3198, 3224
RseI	CAYNNNNRTG	4 cut(s)	956, 1488, 2217, 2996
SacI	GAGCTC	1 cut(s)	749
SalI	GTCGAC	1 cut(s)	1508
SapI	GCTCTTC	1 cut(s)	28
Sau96I	GGNCC	9 cut(s)	140, 172, 787, 1430, 1532, 1575, 1814, 2805, 2921
SbfI	CCTGCAGG	1 cut(s)	1438
ScaI	AGTACT	2 cut(s)	502, 970
SchI	GAGTC	2 cut(s)	167, 1505
ScrFI	CCNGG	7 cut(s)	525, 784, 1193, 1527, 2217, 2928, 3135
SdaI	CCTGCAGG	1 cut(s)	1438
SduI	GDGCHC	4 cut(s)	253, 413, 749, 1412
SfcI	CTRYAG	4 cut(s)	315, 543, 1434, 2669
Sfr274I	CTCGAG	1 cut(s)	176
SinI	GGWCC	6 cut(s)	140, 172, 787, 1430, 1814, 2921
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	4 cut(s)	956, 1488, 2217, 2996
SmlI	CTYRAG	4 cut(s)	176, 518, 708, 2030
SmoI	CTYRAG	4 cut(s)	176, 518, 708, 2030
SnaBI	TACGTA	1 cut(s)	3197
Sse8387I	CCTGCAGG	1 cut(s)	1438
SseBI	AGGCCT	4 cut(s)	80, 1079, 2863, 3244
SspI	AATATT	2 cut(s)	2070, 2455
SspMI	CTAG	6 cut(s)	1089, 1224, 1494, 1572, 3066, 3081
SstI	GAGCTC	1 cut(s)	749
StuI	AGGCCT	4 cut(s)	80, 1079, 2863, 3244
StyD4I	CCNGG	7 cut(s)	523, 782, 1191, 1525, 2215, 2926, 3133
StyI	CCWWGG	3 cut(s)	285, 2287, 2808
TaaI	ACNGT	6 cut(s)	451, 796, 2448, 2473, 2483, 2871
TaiI	ACGT	7 cut(s)	264, 1417, 3045, 3127, 3199, 3217, 3372
TaqI	TCGA	4 cut(s)	177, 371, 1509, 2265
TatI	WGTACW	2 cut(s)	500, 968
TauI	GCSGC	5 cut(s)	120, 242, 281, 284, 298
TfiI	GAWTC	8 cut(s)	152, 209, 373, 608, 1159, 1553, 2335, 2907
TseFI	GTSAC	8 cut(s)	846, 986, 1285, 1316, 2362, 2706, 2722, 3416
Tsp45I	GTSAC	8 cut(s)	846, 986, 1285, 1316, 2362, 2706, 2722, 3416
TspGWI	ACGGA	2 cut(s)	143, 484
Van91I	CCANNNNNTGG	1 cut(s)	1823
Vha464I	CTTAAG	1 cut(s)	518
VpaK11BI	GGWCC	6 cut(s)	140, 172, 787, 1430, 1814, 2921
VspI	ATTAAT	2 cut(s)	2019, 2487
XagI	CCTNNNNNAGG	2 cut(s)	2901, 3257
XapI	RAATTY	3 cut(s)	1130, 1260, 1763
XceI	RCATGY	2 cut(s)	668, 3115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3355
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	4 cut(s)	1417, 1509, 2392, 3193
XspI	CTAG	6 cut(s)	1089, 1224, 1494, 1572, 3066, 3081
ZrmI	AGTACT	2 cut(s)	502, 970
Zsp2I	ATGCAT	3 cut(s)	670, 2119, 2595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.