AT1G03350

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013426
Physical Location & Seq
Reverse (-)
822582 .. 824410
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03350.1

Sequence Viewer

Length: 1413 bp
ATGAATTTCTTCAAATCCGTCTTCACGGAAGACCTAGATCCTCCAGAAACCGAATCCGAATCCGATTCACCGAAACACAGCGAAGAGCATGAACATCCAGAGCAAGAACATCCAGAGCAATCTGAATCTAACGACGACGGTGGATGGAGCTTCGGTGGTCTGATGAAAACTCTAGCCACCAGATCCGAATCCGTGATTGAAACCTACCGACGAGATCTCGAAGAATTTGGCACAGGTTTGAAGAAAGAGATCGAGGTGGCTCAGGGATCGCTTGGTACGGTGGGACATGCGATTGATGAGCTTGGGAACACGGTGCTAAAAGGTACGGCTGAGATTATTGCTCAAGGTAAGGAAGCGATTTTAGCCGCTGGTAATGAATCTGATTCTTCTGATAACAATAGTAGTCAGAGTTTTGGTCGTCGTGATAGCTTCAGTTCGAAACCATATAGTCGTTTCGATGCTCAGATTCGTGCTGTTCAAGGAGATCTCAACACTTACTGTGAAGAGCCTGAGGATTCAGATGATTACAAAAAGTGGGAATCTGCGTTTTCTCTGGATGGAAAAGCTGAGGAGATGGAGAAATTGTTGGAGGAAAATGGTGATATGAAAGGAGTGTATAAAAGGGTCGTTCCGAGTATGGTTGATCACGAGACCTTCTGGTTTAGGTATTTCTATAGGGTTAACAAGCTCAAGCAAGCTGAGGATTTAAGGGCTAATCTTGTGAAACGAGCCATCTCTCTGGATGATGAAGAAGAATTGAGCTGGGATATTGATGATGAAGAGGAGAGCAGCGAGAAAGTTGTTGAAGCTACCAAAGATGTTTCAAGGTTGAAACTTGAAGGGAATGATGGTATGGGTGGTGGAGATGTGAGTGAAACTGTGAAAGATGAAGTGGAAAGTACATATTCAGTGGCTAAAGTGAGCACGCAAGATGAAGTGACAAGTGCAGATTCAGTGACTGAAGTGAGCAATGTTGGTTTGAAGACAGATAAAGATTCTGAGGAAAAGAAGGAGACTGATAGTGAGGAAGTTCCAGAAGAAAAATCATTTGTTGATGCTGCTCCTCCTGCGTCTGATGAGGCTCCAATCCAAGATTCTGTCAAACCAACATCTGATGAGGCTCCAATCCAAGATTCTGTCAAACCAAAATCTGATGAGGCTGCTCCATCCCAAGACTCAGCTAAACCAGATGTGGCTGCTTCTTCATCAACTCAACAACCATCTGAAGAGGATTTGGGATGGGACGAGATCGAGGATATGAGTAGCATAGATGGTAAGGAAACGAGTCGGTCTGGTGGTAGTCCAAACAGAGCTGAGCTGCGTAAACGTCTGAGTGCTGCAGAGGAAGATGAAGATTTAAGTTGGGACATTGATGAAGATGACGAAGAAGAATCATCATCATCCAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

470

Amino Acids

51.89

Weight (kDa)

4.24

Isoelectric Point (pI)

64.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 179 - 235 2.6e-16 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013426)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03350
fragaria_vesca FvH4_2g24111
malus_domestica MD03G1271200.v1.1
prunus_persica Prupe.8G247300_v2.0.a1
pyrus_communis pycom03g21590 pycom11g25850
rosa_chinensis RchiOBHm_Chr6g0291911
rosa_laevigata RLG00000012079
rosa_multiflora Rmu_co8044656.1_g000001 Rmu_sc0016851.1_g000001 Rmu_sc0030145.1_g000001
rosa_roxburghii Rroxscaffold_7G00175630
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG335300 Rh6BG342700 Rh6CG348900 Rh6DG335600
rosa_wichuraiana Rw6G029180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 366
AclWI GGATC 3 cut(s) 32, 177, 274
AcsI RAATTY 2 cut(s) 4, 224
AcuI CTGAAG 3 cut(s) 415, 981, 1245
AfaI GTAC 3 cut(s) 277, 325, 901
AgsI TTSAA 9 cut(s) 13, 200, 241, 479, 806, 825, 832, 839, 982
AjuI GAANNNNNNNTTGG 4 cut(s) 1078, 1110, 1117, 1149
Alw21I GWGCWC 1 cut(s) 926
Alw26I GTCTC 2 cut(s) 644, 1007
AlwI GGATC 3 cut(s) 32, 177, 274
AlwNI CAGNNNCTG 1 cut(s) 959
ApeKI GCWGC 6 cut(s) 789, 1058, 1160, 1196, 1318, 1337
ApoI RAATTY 2 cut(s) 4, 224
Asp700I GAANNNNTTC 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 60, 611
AsuII TTCGAA 1 cut(s) 437
AxyI CCTNAGG 1 cut(s) 510
BauI CACGAG 1 cut(s) 647
BbsI GAAGAC 3 cut(s) 13, 36, 989
Bbv12I GWGCWC 1 cut(s) 926
BbvCI CCTCAGC 2 cut(s) 567, 699
BbvI GCAGC 6 cut(s) 801, 1045, 1147, 1183, 1305, 1324
BccI CCATC 9 cut(s) 138, 551, 568, 740, 842, 1174, 1228, 1233, 1265
BceAI ACGGC 1 cut(s) 342
BclI TGATCA 1 cut(s) 643
BcoDI GTCTC 2 cut(s) 644, 1007
BfaI CTAG 2 cut(s) 35, 173
BfmI CTRYAG 2 cut(s) 673, 1338
BglII AGATCT 2 cut(s) 214, 484
BisI GCNGC 7 cut(s) 366, 790, 1059, 1161, 1197, 1319, 1338
BlpI GCTNAGC 1 cut(s) 1314
BlsI GCNGC 7 cut(s) 367, 791, 1060, 1162, 1198, 1320, 1339
BmiI GGNNCC 2 cut(s) 1083, 1122
BmsI GCATC 2 cut(s) 448, 1045
BpiI GAAGAC 3 cut(s) 13, 36, 989
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 3 cut(s) 261, 567, 699
Bpu1102I GCTNAGC 1 cut(s) 1314
Bpu14I TTCGAA 1 cut(s) 437
BpuEI CTTGAG 2 cut(s) 327, 674
BsaBI GATNNNNATC 1 cut(s) 187
BsaI GGTCTC 1 cut(s) 644
BsaXI ACNNNNNCTCC 4 cut(s) 139, 169, 569, 599
Bse21I CCTNAGG 1 cut(s) 510
Bse3DI GCAATG 1 cut(s) 976
Bse8I GATNNNNATC 1 cut(s) 187
BseGI GGATG 8 cut(s) 94, 109, 149, 562, 748, 1166, 1244, 1400
BseJI GATNNNNATC 1 cut(s) 187
BseMI GCAATG 1 cut(s) 976
BseRI GAGGAG 3 cut(s) 584, 797, 1053
BseXI GCAGC 6 cut(s) 801, 1045, 1147, 1183, 1305, 1324
BseYI CCCAGC 1 cut(s) 762
BsgI GTGCAG 1 cut(s) 966
BsiHKAI GWGCWC 1 cut(s) 926
BslFI GGGAC 3 cut(s) 297, 1256, 1379
BsmAI GTCTC 2 cut(s) 644, 1007
BsmFI GGGAC 3 cut(s) 297, 1256, 1379
Bso31I GGTCTC 1 cut(s) 644
Bsp119I TTCGAA 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 926
Bsp143I GATC 8 cut(s) 37, 182, 214, 249, 266, 484, 643, 1248
Bsp1720I GCTNAGC 1 cut(s) 1314
BspACI CCGC 1 cut(s) 366
BspLI GGNNCC 2 cut(s) 1083, 1122
BspMAI CTGCAG 1 cut(s) 1342
BspPI GGATC 3 cut(s) 32, 177, 274
BspQI GCTCTTC 2 cut(s) 78, 498
BspT104I TTCGAA 1 cut(s) 437
BspTNI GGTCTC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 976
BssMI GATC 8 cut(s) 37, 182, 214, 249, 266, 484, 643, 1248
BssSI CACGAG 1 cut(s) 647
Bst2BI CACGAG 1 cut(s) 647
Bst4CI ACNGT 5 cut(s) 140, 280, 313, 500, 880
Bst6I CTCTTC 4 cut(s) 78, 498, 774, 1221
BstBI TTCGAA 1 cut(s) 437
BstC8I GCNNGC 2 cut(s) 696, 926
BstF5I GGATG 8 cut(s) 94, 109, 149, 562, 748, 1166, 1244, 1400
BstKTI GATC 8 cut(s) 40, 185, 217, 252, 269, 487, 646, 1251
BstMAI GTCTC 2 cut(s) 644, 1007
BstMBI GATC 8 cut(s) 37, 182, 214, 249, 266, 484, 643, 1248
BstMWI GCNNNNNNNGC 2 cut(s) 362, 1067
BstNSI RCATGY 1 cut(s) 290
BstSFI CTRYAG 2 cut(s) 673, 1338
BstV1I GCAGC 6 cut(s) 801, 1045, 1147, 1183, 1305, 1324
BstV2I GAAGAC 3 cut(s) 13, 36, 989
BstX2I RGATCY 4 cut(s) 37, 182, 214, 484
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 4 cut(s) 37, 182, 214, 484
Bsu36I CCTNAGG 1 cut(s) 510
BtsCI GGATG 8 cut(s) 94, 109, 149, 562, 748, 1166, 1244, 1400
BtsIMutI CAGTG 2 cut(s) 915, 960
Cac8I GCNNGC 2 cut(s) 696, 926
CaiI CAGNNNCTG 1 cut(s) 959
CseI GACGC 1 cut(s) 1059
Csp6I GTAC 3 cut(s) 276, 324, 900
CviAII CATG 2 cut(s) 89, 287
CviQI GTAC 3 cut(s) 276, 324, 900
DpnI GATC 8 cut(s) 39, 184, 216, 251, 268, 486, 645, 1250
DpnII GATC 8 cut(s) 37, 182, 214, 249, 266, 484, 643, 1248
Eam1104I CTCTTC 4 cut(s) 78, 498, 774, 1221
EarI CTCTTC 4 cut(s) 78, 498, 774, 1221
Eco31I GGTCTC 1 cut(s) 644
Eco57I CTGAAG 3 cut(s) 415, 981, 1245
Eco81I CCTNAGG 1 cut(s) 510
FaeI CATG 2 cut(s) 92, 290
FaqI GGGAC 3 cut(s) 297, 1256, 1379
FatI CATG 2 cut(s) 88, 286
FbaI TGATCA 1 cut(s) 643
Fnu4HI GCNGC 7 cut(s) 366, 790, 1059, 1161, 1197, 1319, 1338
FokI GGATG 8 cut(s) 81, 96, 156, 569, 755, 1153, 1251, 1387
Fsp4HI GCNGC 7 cut(s) 366, 790, 1059, 1161, 1197, 1319, 1338
FspBI CTAG 2 cut(s) 35, 173
GluI GCNGC 7 cut(s) 366, 790, 1059, 1161, 1197, 1319, 1338
GsaI CCCAGC 1 cut(s) 766
GsuI CTGGAG 1 cut(s) 27
HgaI GACGC 1 cut(s) 1059
Hin1II CATG 2 cut(s) 92, 290
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HindIII AAGCTT 1 cut(s) 1407
HpaI GTTAAC 1 cut(s) 682
HphI GGTGA 2 cut(s) 60, 611
Hpy166II GTNNAC 2 cut(s) 682, 1325
Hpy188III TCNNGA 9 cut(s) 44, 98, 113, 218, 422, 554, 647, 740, 1034
Hpy8I GTNNAC 2 cut(s) 682, 1325
Hpy99I CGWCG 4 cut(s) 137, 140, 213, 423
HpyAV CCTTC 3 cut(s) 664, 833, 1003
HpyCH4III ACNGT 5 cut(s) 140, 280, 313, 500, 880
HpyCH4IV ACGT 1 cut(s) 1327
HpyCH4V TGCA 2 cut(s) 947, 1340
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 1067
HpySE526I ACGT 1 cut(s) 1327
Hsp92II CATG 2 cut(s) 92, 290
Ksp22I TGATCA 1 cut(s) 643
KspAI GTTAAC 1 cut(s) 682
Kzo9I GATC 8 cut(s) 37, 182, 214, 249, 266, 484, 643, 1248
LguI GCTCTTC 2 cut(s) 78, 498
LmnI GCTCC 5 cut(s) 147, 1066, 1087, 1126, 1168
Lsp1109I GCAGC 6 cut(s) 801, 1045, 1147, 1183, 1305, 1324
LweI GCATC 2 cut(s) 448, 1045
MaeI CTAG 2 cut(s) 35, 173
MaeII ACGT 1 cut(s) 1327
MaeIII GTNAC 2 cut(s) 937, 955
MalI GATC 8 cut(s) 39, 184, 216, 251, 268, 486, 645, 1250
MboI GATC 8 cut(s) 37, 182, 214, 249, 266, 484, 643, 1248
MflI RGATCY 4 cut(s) 37, 182, 214, 484
MhlI GDGCHC 1 cut(s) 926
MluCI AATT 4 cut(s) 4, 224, 581, 755
MlyI GAGTC 2 cut(s) 1169, 1294
MmeI TCCRAC 1 cut(s) 567
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 4 cut(s) 681, 707, 1358, 1411
MspA1I CMGCKG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 362, 1067
NdeII GATC 8 cut(s) 37, 182, 214, 249, 266, 484, 643, 1248
NlaIII CATG 2 cut(s) 92, 290
NlaIV GGNNCC 2 cut(s) 1083, 1122
NmuCI GTSAC 2 cut(s) 937, 955
NspI RCATGY 1 cut(s) 290
NspV TTCGAA 1 cut(s) 437
PciSI GCTCTTC 2 cut(s) 78, 498
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 7 cut(s) 367, 791, 1060, 1162, 1198, 1320, 1339
PleI GAGTC 2 cut(s) 1169, 1293
PpsI GAGTC 2 cut(s) 1169, 1293
PspFI CCCAGC 1 cut(s) 762
PspN4I GGNNCC 2 cut(s) 1083, 1122
PstI CTGCAG 1 cut(s) 1342
PstNI CAGNNNCTG 1 cut(s) 959
PsuI RGATCY 4 cut(s) 37, 182, 214, 484
RsaI GTAC 3 cut(s) 277, 325, 901
RsaNI GTAC 3 cut(s) 276, 324, 900
SapI GCTCTTC 2 cut(s) 78, 498
SaqAI TTAA 4 cut(s) 681, 707, 1358, 1411
SatI GCNGC 7 cut(s) 366, 790, 1059, 1161, 1197, 1319, 1338
Sau3AI GATC 8 cut(s) 37, 182, 214, 249, 266, 484, 643, 1248
SchI GAGTC 2 cut(s) 1169, 1294
SduI GDGCHC 1 cut(s) 926
SfaNI GCATC 2 cut(s) 448, 1045
SfcI CTRYAG 2 cut(s) 673, 1338
SfuI TTCGAA 1 cut(s) 437
SmlI CTYRAG 2 cut(s) 342, 689
SmoI CTYRAG 2 cut(s) 342, 689
Sse9I AATT 4 cut(s) 4, 224, 581, 755
SsiI CCGC 1 cut(s) 366
SspMI CTAG 2 cut(s) 35, 173
TaaI ACNGT 5 cut(s) 140, 280, 313, 500, 880
TaiI ACGT 1 cut(s) 1330
TaqI TCGA 5 cut(s) 219, 252, 437, 456, 1251
TaqII GACCGA 1 cut(s) 1278
TasI AATT 4 cut(s) 4, 224, 581, 755
TatI WGTACW 1 cut(s) 899
TauI GCSGC 1 cut(s) 368
Tru1I TTAA 4 cut(s) 681, 707, 1358, 1411
Tru9I TTAA 4 cut(s) 681, 707, 1358, 1411
TscAI CASTG 2 cut(s) 915, 960
TseFI GTSAC 2 cut(s) 937, 955
TseI GCWGC 6 cut(s) 789, 1058, 1160, 1196, 1318, 1337
Tsp45I GTSAC 2 cut(s) 937, 955
TspGWI ACGGA 3 cut(s) 7, 41, 181
TspRI CASTG 2 cut(s) 915, 960
XapI RAATTY 2 cut(s) 4, 224
XceI RCATGY 1 cut(s) 290
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 35, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.