MD03G1271200.v1.1

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0013426
Physical Location & Seq
Reverse (-)
35470110 .. 35471642
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1271200.v1.1.491

Sequence Viewer

Length: 1533 bp
ATGTGCGCTCTACACTTCAAGCGCACGTTAACATTCCTAAATTCCCATCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCAATTTTCTGGTAATTCCCAATCCCTCTGCTTTCCCAAATTTTCCTCCATGAATTTCTTCAAATCCGTATTCTCCGACGACCCAGATCCCCCCTACCCCGAATCCGAATCCCCAACGACCCAACCCAATCCCAACCGTACCGGCAACACCGGCGGATGGAATTTCGGCGATCTGATCAAAACCCTAGCGACCAAATCCGAGTCGGTGATTGAGACCTACCGCCGCGACCTGCAGGAATTCGGGTCGGGTCTGAAGAAAGAGATCGAGGTGGCTCAGGGGTCGTTGGAGACGGTGGGGCACGTCATCGACAAGTTCGGGAACACAGTGCTGAAAGGGACGGCCGAGATCATCGCTCAGGGCAAGGACGCGATCCTTGCCGACGACGAAGCGGATTCCTCCGACGCCAAAGATCAAAGCTTTAGCTCTCAGCAGGGCTTGAATTCGAAACGGTACAGTAGGTTTGACGCTCAGGTGCGTGCGATTCAGGGTGACCCTAGCACTTACTGCGAGGAGCCTGAGGATTTGAATGATTACGAAAAATGGAAATCTGGGTTTGATTTGGAGGAGAAAGGTGAAGAAATTGAGAGGCTTTTCAAAGAAAACGGAGCTATGGAGGGGATTTACAAAAGGGTTGTTTCGAATAGCGTTGATCACGAAAGCTTTTGGTGTAGTTACTTTTATAGGGTTCATAAGCTGAGGCAGGCTGAGGAAGTGAGAGTGAATCTCGTTAAGCGGGCGATTTCTGTTGAGGAGGATGAGGAGTTAAGTTGGGATGTTGATGATGATGAGTATGATGACAATGTGAGCAATGTGGTGTCGAAAGAGAATTCGGGGAAAAGTACTGAAGTAGCTGCTGAAGGTTCTGGTAAAGATGGGAGAGTTGAGGACTTGAGGGTTGGGAATGAGGTTGGAGAGAAGAGTTCCAATAATGTGGGAGAGGGGAGCAGTGTTAGTGAAGAGACTAATGTGGTGTTGAAGAAGGGCGATTTAGCCGCGAATAGCGAATTGGTCAGCAAAGATTCTGAGCAAAAGATTGTTACGGAAGAGAGCAGCCCTGTTGGGGAATCTCAAGTTGTTGATCAGAAGAAGGGTAGTGCTTTGGAGTTGAGTGGCGAAAAGGAGTCCAAAAAGAAAATGCAGGTAGAAAGGGATTCCGGGAAGAAAGATTTACCATTGAAATCGGAGGAGAAAGCGGCAGTGGAAGGGAAGAAGAATGGGGCTGCTGAATCCGGTAAAGGCAATGAAACGCCAGAGGCAGAAGACCTTGGGTGGGATGAGATTGAGGATCTTAGCAGCATTGACGATAAAAAAGTTAGCCATGGTGGTGGAAGTGGAAGTCCTACTGATAAAGCCGAGCTCCGAAAGCGGCTCAGTACTGCAGCTGAAGAAGAAGAAGAAGATTTAAGCTGGGATATTGAGGAGGATGATGATGATGTACCAGCTAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

511

Amino Acids

56.12

Weight (kDa)

4.55

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 208 - 264 6.5e-15 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013426)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03350
fragaria_vesca FvH4_2g24111
malus_domestica MD03G1271200.v1.1
prunus_persica Prupe.8G247300_v2.0.a1
pyrus_communis pycom03g21590 pycom11g25850
rosa_chinensis RchiOBHm_Chr6g0291911
rosa_laevigata RLG00000012079
rosa_multiflora Rmu_co8044656.1_g000001 Rmu_sc0016851.1_g000001 Rmu_sc0030145.1_g000001
rosa_roxburghii Rroxscaffold_7G00175630
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG335300 Rh6BG342700 Rh6CG348900 Rh6DG335600
rosa_wichuraiana Rw6G029180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 318, 1210
AccII CGCG 3 cut(s) 306, 449, 1076
AciI CCGC 8 cut(s) 234, 301, 304, 470, 814, 1074, 1274, 1447
AclWI GGATC 3 cut(s) 161, 445, 1374
AcoI YGGCCR 1 cut(s) 420
AcsI RAATTY 7 cut(s) 40, 119, 133, 241, 317, 520, 907
AcuI CTGAAG 4 cut(s) 353, 945, 957, 1485
AcyI GRCGYC 1 cut(s) 483
AfaI GTAC 5 cut(s) 220, 533, 922, 1456, 1518
AfiI CCNNNNNNNGG 3 cut(s) 237, 1141, 1351
AgsI TTSAA 7 cut(s) 19, 142, 520, 607, 676, 1057, 1258
AjiI CACGTC 1 cut(s) 382
AjuI GAANNNNNNNTTGG 2 cut(s) 1070, 1102
Alw21I GWGCWC 1 cut(s) 1440
Alw26I GTCTC 3 cut(s) 287, 362, 1034
AlwI GGATC 3 cut(s) 161, 445, 1374
AoxI GGCC 1 cut(s) 420
ApeKI GCWGC 5 cut(s) 932, 1131, 1301, 1374, 1460
ApoI RAATTY 7 cut(s) 40, 119, 133, 241, 317, 520, 907
Asp700I GAANNNNTTC 1 cut(s) 137
AspLEI GCGC 2 cut(s) 8, 24
AsuC2I CCSGG 1 cut(s) 1237
AsuHPI GGTGA 3 cut(s) 298, 581, 665
AsuII TTCGAA 2 cut(s) 524, 719
AxyI CCTNAGG 1 cut(s) 597
BaeGI GKGCMC 1 cut(s) 381
BanII GRGCYC 1 cut(s) 1440
BbsI GAAGAC 1 cut(s) 1347
Bbv12I GWGCWC 1 cut(s) 1440
BbvCI CCTCAGC 2 cut(s) 776, 786
BbvI GCAGC 5 cut(s) 919, 1143, 1288, 1386, 1472
BccI CCATC 3 cut(s) 54, 231, 947
BceAI ACGGC 1 cut(s) 435
BclI TGATCA 3 cut(s) 255, 730, 1159
BcnI CCSGG 1 cut(s) 1237
BcoDI GTCTC 3 cut(s) 287, 362, 1034
BfaI CTAG 2 cut(s) 266, 576
BfmI CTRYAG 2 cut(s) 311, 1458
BfuAI ACCTGC 2 cut(s) 318, 1210
BisI GCNGC 9 cut(s) 304, 933, 1074, 1132, 1275, 1302, 1375, 1448, 1461
BlsI GCNGC 9 cut(s) 305, 934, 1075, 1133, 1276, 1303, 1376, 1449, 1462
BmcAI AGTACT 2 cut(s) 922, 1456
Bme1390I CCNGG 1 cut(s) 1237
BmgBI CACGTC 1 cut(s) 382
BmiI GGNNCC 1 cut(s) 594
BmrFI CCNGG 1 cut(s) 1237
BpiI GAAGAC 1 cut(s) 1347
BplI GAGNNNNNCTC 2 cut(s) 789, 821
Bpu10I CCTNAGC 5 cut(s) 354, 435, 549, 776, 786
Bpu14I TTCGAA 2 cut(s) 524, 719
BpuEI CTTGAG 2 cut(s) 991, 1134
BpuMI CCSGG 1 cut(s) 1237
BsaHI GRCGYC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 1345, 1399
BsaWI WCCGGW 1 cut(s) 1310
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 1141, 1351
Bse118I RCCGGY 2 cut(s) 221, 230
Bse21I CCTNAGG 1 cut(s) 597
Bse3DI GCAATG 2 cut(s) 895, 1327
BseDI CCNNGG 2 cut(s) 1345, 1399
BseGI GGATG 5 cut(s) 242, 841, 859, 1360, 1510
BseLI CCNNNNNNNGG 3 cut(s) 237, 1141, 1351
BseMI GCAATG 2 cut(s) 895, 1327
BseMII CTCAG 9 cut(s) 368, 449, 521, 563, 588, 767, 777, 1095, 1465
BseRI GAGGAG 6 cut(s) 605, 659, 845, 854, 1280, 1514
BseSI GKGCMC 1 cut(s) 381
BseX3I CGGCCG 1 cut(s) 420
BseXI GCAGC 5 cut(s) 919, 1143, 1288, 1386, 1472
BseYI CCCAGC 1 cut(s) 1488
Bsh1236I CGCG 3 cut(s) 306, 449, 1076
Bsh1285I CGRYCG 1 cut(s) 423
BshFI GGCC 1 cut(s) 422
BsiEI CGRYCG 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 1440
BsiSI CCGG 4 cut(s) 222, 231, 1236, 1311
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 3 cut(s) 237, 1141, 1351
BsmAI GTCTC 3 cut(s) 287, 362, 1034
BsmBI CGTCTC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 430
BsnI GGCC 1 cut(s) 422
Bso31I GGTCTC 1 cut(s) 287
Bsp119I TTCGAA 2 cut(s) 524, 719
Bsp1286I GDGCHC 2 cut(s) 381, 1440
Bsp19I CCATGG 1 cut(s) 1399
BspACI CCGC 8 cut(s) 234, 301, 304, 470, 814, 1074, 1274, 1447
BspANI GGCC 1 cut(s) 422
BspCNI CTCAG 9 cut(s) 367, 448, 520, 562, 589, 768, 778, 1096, 1464
BspFNI CGCG 3 cut(s) 306, 449, 1076
BspLI GGNNCC 1 cut(s) 594
BspMAI CTGCAG 2 cut(s) 315, 1462
BspMI ACCTGC 2 cut(s) 318, 1210
BspPI GGATC 3 cut(s) 161, 445, 1374
BspT104I TTCGAA 2 cut(s) 524, 719
BspTNI GGTCTC 1 cut(s) 287
BsrDI GCAATG 2 cut(s) 895, 1327
BsrFI RCCGGY 2 cut(s) 221, 230
BssAI RCCGGY 2 cut(s) 221, 230
BssECI CCNNGG 2 cut(s) 1345, 1399
BssNI GRCGYC 1 cut(s) 483
BssT1I CCWWGG 2 cut(s) 1345, 1399
Bst4CI ACNGT 5 cut(s) 218, 373, 406, 531, 536
Bst6I CTCTTC 3 cut(s) 992, 1032, 1119
BstACI GRCGYC 1 cut(s) 483
BstAPI GCANNNNNTGC 1 cut(s) 585
BstBI TTCGAA 2 cut(s) 524, 719
BstC8I GCNNGC 3 cut(s) 558, 783, 816
BstDSI CCRYGG 1 cut(s) 1399
BstEII GGTNACC 1 cut(s) 569
BstF5I GGATG 5 cut(s) 242, 841, 859, 1360, 1510
BstFNI CGCG 3 cut(s) 306, 449, 1076
BstHHI GCGC 2 cut(s) 8, 24
BstMAI GTCTC 3 cut(s) 287, 362, 1034
BstMCI CGRYCG 1 cut(s) 423
BstMWI GCNNNNNNNGC 4 cut(s) 231, 455, 585, 1444
BstPI GGTNACC 1 cut(s) 569
BstSCI CCNGG 1 cut(s) 1235
BstSFI CTRYAG 2 cut(s) 311, 1458
BstSLI GKGCMC 1 cut(s) 381
BstUI CGCG 3 cut(s) 306, 449, 1076
BstV1I GCAGC 5 cut(s) 919, 1143, 1288, 1386, 1472
BstV2I GAAGAC 1 cut(s) 1347
BstX2I RGATCY 2 cut(s) 166, 1366
BstXI CCANNNNNNTGG 3 cut(s) 89, 1012, 1406
BstYI RGATCY 2 cut(s) 166, 1366
BstZI CGGCCG 1 cut(s) 420
Bsu36I CCTNAGG 1 cut(s) 597
BsuRI GGCC 1 cut(s) 422
BtgI CCRYGG 1 cut(s) 1399
BtgZI GCGATG 1 cut(s) 415
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 5 cut(s) 242, 841, 859, 1360, 1510
BtsI GCAGTG 2 cut(s) 1033, 1284
BtsIMutI CAGTG 3 cut(s) 411, 1033, 1284
BveI ACCTGC 2 cut(s) 318, 1210
Cac8I GCNNGC 3 cut(s) 558, 783, 816
CfoI GCGC 2 cut(s) 8, 24
Cfr10I RCCGGY 2 cut(s) 221, 230
CseI GACGC 3 cut(s) 455, 491, 554
Csp6I GTAC 5 cut(s) 219, 532, 921, 1455, 1517
CviAII CATG 2 cut(s) 130, 1400
CviQI GTAC 5 cut(s) 219, 532, 921, 1455, 1517
EaeI YGGCCR 1 cut(s) 420
EagI CGGCCG 1 cut(s) 420
Eam1104I CTCTTC 3 cut(s) 992, 1032, 1119
EarI CTCTTC 3 cut(s) 992, 1032, 1119
EciI GGCGGA 1 cut(s) 249
Ecl136II GAGCTC 1 cut(s) 1438
EclXI CGGCCG 1 cut(s) 420
Eco130I CCWWGG 2 cut(s) 1345, 1399
Eco24I GRGCYC 1 cut(s) 1440
Eco31I GGTCTC 1 cut(s) 287
Eco52I CGGCCG 1 cut(s) 420
Eco53kI GAGCTC 1 cut(s) 1438
Eco57I CTGAAG 4 cut(s) 353, 945, 957, 1485
Eco81I CCTNAGG 1 cut(s) 597
Eco91I GGTNACC 1 cut(s) 569
EcoICRI GAGCTC 1 cut(s) 1438
EcoO65I GGTNACC 1 cut(s) 569
EcoRI GAATTC 3 cut(s) 317, 520, 907
EcoT14I CCWWGG 2 cut(s) 1345, 1399
EcoT38I GRGCYC 1 cut(s) 1440
ErhI CCWWGG 2 cut(s) 1345, 1399
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 2 cut(s) 133, 1403
FaiI YATR 6 cut(s) 131, 692, 762, 771, 873, 1401
FaqI GGGAC 1 cut(s) 430
FatI CATG 2 cut(s) 129, 1399
FauI CCCGC 1 cut(s) 807
FbaI TGATCA 3 cut(s) 255, 730, 1159
Fnu4HI GCNGC 9 cut(s) 304, 933, 1074, 1132, 1275, 1302, 1375, 1448, 1461
FokI GGATG 5 cut(s) 249, 848, 866, 1367, 1517
FriOI GRGCYC 1 cut(s) 1440
Fsp4HI GCNGC 9 cut(s) 304, 933, 1074, 1132, 1275, 1302, 1375, 1448, 1461
FspBI CTAG 2 cut(s) 266, 576
GlaI GCGC 2 cut(s) 7, 23
GluI GCNGC 9 cut(s) 304, 933, 1074, 1132, 1275, 1302, 1375, 1448, 1461
GsaI CCCAGC 1 cut(s) 1492
HaeIII GGCC 1 cut(s) 422
HapII CCGG 4 cut(s) 222, 231, 1236, 1311
HgaI GACGC 3 cut(s) 455, 491, 554
HhaI GCGC 2 cut(s) 8, 24
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 2 cut(s) 133, 1403
Hin6I GCGC 2 cut(s) 6, 22
HinP1I GCGC 2 cut(s) 6, 22
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HindIII AAGCTT 2 cut(s) 496, 739
HpaI GTTAAC 1 cut(s) 30
HpaII CCGG 4 cut(s) 222, 231, 1236, 1311
HphI GGTGA 3 cut(s) 298, 581, 665
Hpy166II GTNNAC 1 cut(s) 30
Hpy188III TCNNGA 2 cut(s) 397, 734
Hpy8I GTNNAC 1 cut(s) 30
Hpy99I CGWCG 4 cut(s) 161, 464, 467, 485
HpyAV CCTTC 4 cut(s) 932, 1054, 1162, 1277
HpyCH4III ACNGT 5 cut(s) 218, 373, 406, 531, 536
HpyCH4IV ACGT 2 cut(s) 26, 381
HpyCH4V TGCA 3 cut(s) 313, 1219, 1460
HpyF10VI GCNNNNNNNGC 4 cut(s) 231, 455, 585, 1444
HpySE526I ACGT 2 cut(s) 26, 381
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 2 cut(s) 133, 1403
HspAI GCGC 2 cut(s) 6, 22
Ksp22I TGATCA 3 cut(s) 255, 730, 1159
KspAI GTTAAC 1 cut(s) 30
LmnI GCTCC 4 cut(s) 592, 686, 1023, 1443
Lsp1109I GCAGC 5 cut(s) 919, 1143, 1288, 1386, 1472
MaeI CTAG 2 cut(s) 266, 576
MaeII ACGT 2 cut(s) 26, 381
MaeIII GTNAC 3 cut(s) 569, 752, 1117
MflI RGATCY 2 cut(s) 166, 1366
MhlI GDGCHC 2 cut(s) 381, 1440
MlyI GAGTC 2 cut(s) 290, 1211
MmeI TCCRAC 4 cut(s) 180, 345, 504, 970
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 4 cut(s) 29, 810, 845, 1484
MslI CAYNNNNRTG 1 cut(s) 1404
MspA1I CMGCKG 1 cut(s) 1463
MspI CCGG 4 cut(s) 222, 231, 1236, 1311
MspR9I CCNGG 1 cut(s) 1237
MvnI CGCG 3 cut(s) 306, 449, 1076
MwoI GCNNNNNNNGC 4 cut(s) 231, 455, 585, 1444
NciI CCSGG 1 cut(s) 1237
NcoI CCATGG 1 cut(s) 1399
NlaIII CATG 2 cut(s) 133, 1403
NlaIV GGNNCC 1 cut(s) 594
NmeAIII GCCGAG 2 cut(s) 448, 1459
NmuCI GTSAC 1 cut(s) 569
NspV TTCGAA 2 cut(s) 524, 719
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 9 cut(s) 182, 188, 473, 562, 802, 1100, 1145, 1232, 1307
PfoI TCCNGGA 1 cut(s) 1235
PkrI GCNGC 9 cut(s) 305, 934, 1075, 1133, 1276, 1303, 1376, 1449, 1462
PleI GAGTC 2 cut(s) 289, 1210
PpsI GAGTC 2 cut(s) 289, 1210
Psp124BI GAGCTC 1 cut(s) 1440
PspEI GGTNACC 1 cut(s) 569
PspFI CCCAGC 1 cut(s) 1488
PspN4I GGNNCC 1 cut(s) 594
PstI CTGCAG 2 cut(s) 315, 1462
PsuI RGATCY 2 cut(s) 166, 1366
PvuII CAGCTG 1 cut(s) 1463
RsaI GTAC 5 cut(s) 220, 533, 922, 1456, 1518
RsaNI GTAC 5 cut(s) 219, 532, 921, 1455, 1517
RseI CAYNNNNRTG 1 cut(s) 1404
SacI GAGCTC 1 cut(s) 1440
SaqAI TTAA 4 cut(s) 29, 810, 845, 1484
SatI GCNGC 9 cut(s) 304, 933, 1074, 1132, 1275, 1302, 1375, 1448, 1461
SbfI CCTGCAGG 1 cut(s) 315
ScaI AGTACT 2 cut(s) 922, 1456
SchI GAGTC 2 cut(s) 290, 1211
ScrFI CCNGG 1 cut(s) 1237
SdaI CCTGCAGG 1 cut(s) 315
SduI GDGCHC 2 cut(s) 381, 1440
SfcI CTRYAG 2 cut(s) 311, 1458
SfuI TTCGAA 2 cut(s) 524, 719
SgrAI CRCCGGYG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 1404
SmlI CTYRAG 2 cut(s) 970, 1149
SmoI CTYRAG 2 cut(s) 970, 1149
Sse8387I CCTGCAGG 1 cut(s) 315
SsiI CCGC 8 cut(s) 234, 301, 304, 470, 814, 1074, 1274, 1447
SspMI CTAG 2 cut(s) 266, 576
SstI GAGCTC 1 cut(s) 1440
StyD4I CCNGG 1 cut(s) 1235
StyI CCWWGG 2 cut(s) 1345, 1399
TaaI ACNGT 5 cut(s) 218, 373, 406, 531, 536
TaiI ACGT 2 cut(s) 29, 384
TaqI TCGA 5 cut(s) 345, 387, 524, 719, 899
TatI WGTACW 2 cut(s) 920, 1454
TauI GCSGC 4 cut(s) 306, 1076, 1277, 1450
TfiI GAWTC 9 cut(s) 182, 188, 473, 562, 802, 1100, 1145, 1232, 1307
Tru1I TTAA 4 cut(s) 29, 810, 845, 1484
Tru9I TTAA 4 cut(s) 29, 810, 845, 1484
TscAI CASTG 3 cut(s) 411, 1033, 1284
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 5 cut(s) 932, 1131, 1301, 1374, 1460
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 3 cut(s) 146, 758, 1338
TspGWI ACGGA 3 cut(s) 136, 699, 1136
TspRI CASTG 3 cut(s) 411, 1033, 1284
XapI RAATTY 7 cut(s) 40, 119, 133, 241, 317, 520, 907
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 2 cut(s) 266, 576
ZrmI AGTACT 2 cut(s) 922, 1456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.