Rh6DG335600

BSD domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
54041042 .. 54042547
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG335600.1

Sequence Viewer

Length: 1506 bp
ATGAATTTCTTCAAGTCCGTATTCGCAGACGAGCCCGATCCGTCAAACCCCGAATCCGAATCGGGGCCCACCAGTAACCAAGATCCAGATCCGAAGCCCCAACCCGATCCCAACCCAGCCGGCATGGGCGGGTGGAACTTCGGCGATCTGATCAAAACCATCGCCACCAAGTCCGAGACCGTCATCGAGACCTACCGCCGCGACTTGCAGGAATTCGGGTCGGGTCTGAAGAAAGAGATCGAGGTCGCCCAGGGGTCGCTGGAGACAGTCGGCACCAGAATCGATGAGTTGGGCAACACAGTCCTCGCAGGAACGGCCCAGATCATCTCCCAGGGCATCCTCGCCCCCGATCACGAATCCGATTCGTCCGACTCCAACAACACCTCGACCCCCCAGCGAAGGAGCTTGAATTCCAACAAGTACAGTAGGTTCGAGTCTCAGGTCCGCGCGATTCAGGGTGACGTCAGCACCTACTGTGAGGAGCCTGAGGATTTGGAGGAGTATAGGAAGTGGAAATCGGGGTTTTTGTTGGAGGAGAAGAGGGAGGAGATTGAGGGTTTGCTTGAGGGGAATGGAGCAATGGAGAGTATTTACAACAAGGTCGCGCCGAATGTGGTTGATGATGAGACGTTTTGGAGCAGGTATTATTATAGGGTGTATAAGCTCAAGCAAGCTGAGGATGTTAGGGCGAATCTGGTGAAGAGGGCGATTTCGGTTGAATTGGAGGAGGAGTTGAGTTGGGATGTTGATGATGATGAGTATGATGAAAGTGAGGGCAATGTGGTTGCGAAATCGAGTTTAGGGAAGAGTAGTGAAGATGGTGGTGGAGTTGTGAAGGAGAAGGAGTTGAAGAGTGATGATCAGGTTGGAGATAAGGGTTCCTCAAAGTTGGGAGAGGTGAGCAGTGTTGCTGGAGAGGCTAATGTGGCAGCGAAAACAGAGTCGGTTAGCAAAGATTCGGAGCAAAAGGTTGTCAAGGAAGAGAGTTCCGGTGAGAAATTGCAAAGTGGGACTTCGGAGGTTGTTGAAGAGAAGGAAGGGAAGAGTCTGAAAGTTGATAATGAGAAGAAAGAAAGTGCTGTGGAGTCTAGTGGTGATAGGGAGTCGGAGAAGAAAGGGAATGAAGTAGGGGATTCTGGGATGCCATCAAAATCTGATGAGGAGAAGAAAGTGAATGTAGAAGGGGATTCTGGGAAGAAAGACTTGCCGCCATCAAAATCGGATGATAAAGCGGCTTTAGAGGTGAAGAATGAGGCTCCTGCATCTAGCAAAGAGAGTGGTGTATCGGCTCCTGCTTCAGTCCGGCCCTCAGTAGAACCTGAGGAAGAAGACCTTGGCTGGGATGAGATTGAGGATCTTAGCAGCATTGATGAAAAGAAAGCGAACCCTGGTGCAAGTGGTGGAAGTGCTAATAGAGCTGAGCTGCAGAAGCGGCTCAGCACTGCGGAAGAAGAAGAAGACTTGAGCTGGGATATAGATGATGATGATGAACCCGCCAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

501

Amino Acids

54.55

Weight (kDa)

4.4

Isoelectric Point (pI)

53.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 171 - 227 2.7e-15 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013426)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 465
Acc36I ACCTGC 1 cut(s) 630
AccB1I GGYRCC 1 cut(s) 272
AccII CGCG 4 cut(s) 201, 447, 449, 605
AciI CCGC 9 cut(s) 129, 196, 199, 445, 1208, 1232, 1432, 1445, 1494
AclWI GGATC 5 cut(s) 32, 77, 83, 101, 1362
AcsI RAATTY 3 cut(s) 4, 212, 409
AcuI CTGAAG 2 cut(s) 248, 1281
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 3 cut(s) 63, 399, 1339
AgsI TTSAA 5 cut(s) 13, 409, 719, 850, 1028
AjnI CCWGG 3 cut(s) 249, 330, 1387
AjuI GAANNNNNNNTTGG 2 cut(s) 1317, 1349
AluBI AGCT 7 cut(s) 405, 664, 674, 1418, 1423, 1467, 1502
AluI AGCT 7 cut(s) 405, 664, 674, 1418, 1423, 1467, 1502
Alw26I GTCTC 5 cut(s) 170, 182, 257, 441, 620
AlwI GGATC 5 cut(s) 32, 77, 83, 101, 1362
AoxI GGCC 3 cut(s) 65, 315, 1304
ApaI GGGCCC 1 cut(s) 69
ApeKI GCWGC 3 cut(s) 929, 1362, 1423
ApoI RAATTY 3 cut(s) 4, 212, 409
ArsI GACNNNNNNTTYG 2 cut(s) 926, 958
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 2 cut(s) 449, 607
AspS9I GGNCC 5 cut(s) 65, 66, 316, 442, 1305
AsuHPI GGTGA 6 cut(s) 470, 709, 910, 1004, 1106, 1255
AvaII GGWCC 1 cut(s) 442
AxyI CCTNAGG 2 cut(s) 486, 1320
BaeGI GKGCMC 1 cut(s) 69
BanI GGYRCC 1 cut(s) 272
BanII GRGCYC 2 cut(s) 36, 69
BbsI GAAGAC 2 cut(s) 1335, 1464
BbvCI CCTCAGC 1 cut(s) 675
BbvI GCAGC 3 cut(s) 941, 1374, 1410
BccI CCATC 4 cut(s) 167, 812, 1153, 1219
BceAI ACGGC 1 cut(s) 330
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 3 cut(s) 251, 332, 1389
BclI TGATCA 2 cut(s) 150, 859
BcoDI GTCTC 5 cut(s) 170, 182, 257, 441, 620
BfaI CTAG 2 cut(s) 1089, 1266
BfmI CTRYAG 1 cut(s) 1424
BfuAI ACCTGC 1 cut(s) 630
BisI GCNGC 7 cut(s) 199, 930, 1208, 1233, 1363, 1424, 1433
BlpI GCTNAGC 2 cut(s) 1419, 1436
BlsI GCNGC 7 cut(s) 200, 931, 1209, 1234, 1364, 1425, 1434
Bme1390I CCNGG 3 cut(s) 251, 332, 1389
Bme18I GGWCC 1 cut(s) 442
BmgT120I GGNCC 5 cut(s) 65, 66, 316, 442, 1305
BmiI GGNNCC 7 cut(s) 66, 67, 274, 483, 880, 1257, 1290
BmrFI CCNGG 3 cut(s) 251, 332, 1389
BmsI GCATC 3 cut(s) 345, 1131, 1271
BpiI GAAGAC 2 cut(s) 1335, 1464
BpmI CTGGAG 2 cut(s) 281, 933
Bpu10I CCTNAGC 1 cut(s) 675
Bpu1102I GCTNAGC 2 cut(s) 1419, 1436
BpuEI CTTGAG 3 cut(s) 584, 650, 1483
Bsa29I ATCGAT 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 462
BsaI GGTCTC 2 cut(s) 170, 182
BsaJI CCNNGG 6 cut(s) 249, 250, 330, 331, 1333, 1387
BsaWI WCCGGW 1 cut(s) 989
BsaXI ACNNNNNCTCC 4 cut(s) 716, 746, 830, 860
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 399, 1339
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 72
Bse21I CCTNAGG 2 cut(s) 486, 1320
Bse3DI GCAATG 2 cut(s) 585, 784
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 3 cut(s) 251, 332, 1389
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 6 cut(s) 249, 250, 330, 331, 1333, 1387
BseGI GGATG 6 cut(s) 336, 685, 748, 1146, 1228, 1348
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 3 cut(s) 63, 399, 1339
BseMI GCAATG 2 cut(s) 585, 784
BseMII CTCAG 7 cut(s) 452, 477, 666, 1311, 1323, 1410, 1450
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 7 cut(s) 494, 512, 548, 560, 740, 743, 1175
BseSI GKGCMC 1 cut(s) 69
BseXI GCAGC 3 cut(s) 941, 1374, 1410
BseYI CCCAGC 4 cut(s) 115, 393, 1338, 1467
Bsh1236I CGCG 4 cut(s) 201, 447, 449, 605
BshFI GGCC 3 cut(s) 67, 317, 1306
BshNI GGYRCC 1 cut(s) 272
BshVI ATCGAT 1 cut(s) 282
BsiSI CCGG 3 cut(s) 120, 990, 1303
BslFI GGGAC 1 cut(s) 1024
BslI CCNNNNNNNGG 3 cut(s) 63, 399, 1339
BsmAI GTCTC 5 cut(s) 170, 182, 257, 441, 620
BsmBI CGTCTC 1 cut(s) 620
BsmFI GGGAC 1 cut(s) 1024
BsnI GGCC 3 cut(s) 67, 317, 1306
Bso31I GGTCTC 2 cut(s) 170, 182
Bsp120I GGGCCC 1 cut(s) 65
Bsp1286I GDGCHC 2 cut(s) 36, 69
Bsp1720I GCTNAGC 2 cut(s) 1419, 1436
BspACI CCGC 9 cut(s) 129, 196, 199, 445, 1208, 1232, 1432, 1445, 1494
BspANI GGCC 3 cut(s) 67, 317, 1306
BspCNI CTCAG 7 cut(s) 451, 478, 667, 1312, 1322, 1411, 1449
BspDI ATCGAT 1 cut(s) 282
BspFNI CGCG 4 cut(s) 201, 447, 449, 605
BspLI GGNNCC 7 cut(s) 66, 67, 274, 483, 880, 1257, 1290
BspMAI CTGCAG 1 cut(s) 1428
BspMI ACCTGC 1 cut(s) 630
BspPI GGATC 5 cut(s) 32, 77, 83, 101, 1362
BspT107I GGYRCC 1 cut(s) 272
BspTNI GGTCTC 2 cut(s) 170, 182
BsrDI GCAATG 2 cut(s) 585, 784
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 6 cut(s) 249, 250, 330, 331, 1333, 1387
BssNI GRCGYC 1 cut(s) 462
BssT1I CCWWGG 1 cut(s) 1333
Bst2UI CCWGG 3 cut(s) 251, 332, 1389
Bst4CI ACNGT 5 cut(s) 181, 268, 301, 425, 476
Bst6I CTCTTC 7 cut(s) 533, 695, 800, 845, 975, 1023, 1037
BstACI GRCGYC 1 cut(s) 462
BstC8I GCNNGC 2 cut(s) 121, 672
BstDEI CTNAG 8 cut(s) 438, 486, 675, 1309, 1320, 1358, 1419, 1436
BstF5I GGATG 6 cut(s) 336, 685, 748, 1146, 1228, 1348
BstFNI CGCG 4 cut(s) 201, 447, 449, 605
BstHHI GCGC 2 cut(s) 449, 607
BstMAI GTCTC 5 cut(s) 170, 182, 257, 441, 620
BstMWI GCNNNNNNNGC 6 cut(s) 314, 917, 926, 1415, 1429, 1432
BstNI CCWGG 3 cut(s) 251, 332, 1389
BstSCI CCNGG 3 cut(s) 249, 330, 1387
BstSFI CTRYAG 1 cut(s) 1424
BstSLI GKGCMC 1 cut(s) 69
BstUI CGCG 4 cut(s) 201, 447, 449, 605
BstV1I GCAGC 3 cut(s) 941, 1374, 1410
BstV2I GAAGAC 2 cut(s) 1335, 1464
BstX2I RGATCY 3 cut(s) 82, 88, 1354
BstYI RGATCY 3 cut(s) 82, 88, 1354
Bsu15I ATCGAT 1 cut(s) 282
Bsu36I CCTNAGG 2 cut(s) 486, 1320
BsuRI GGCC 3 cut(s) 67, 317, 1306
BsuTUI ATCGAT 1 cut(s) 282
BtgZI GCGATG 1 cut(s) 145
BtsCI GGATG 6 cut(s) 336, 685, 748, 1146, 1228, 1348
BtsI GCAGTG 2 cut(s) 910, 1440
BtsIMutI CAGTG 2 cut(s) 910, 1440
BveI ACCTGC 1 cut(s) 630
Cac8I GCNNGC 2 cut(s) 121, 672
CfoI GCGC 2 cut(s) 449, 607
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 5 cut(s) 65, 66, 316, 442, 1305
ClaI ATCGAT 1 cut(s) 282
Csp6I GTAC 1 cut(s) 421
CspCI CAANNNNNGTGG 2 cut(s) 1258, 1293
CviAII CATG 1 cut(s) 124
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 8 cut(s) 438, 486, 675, 1309, 1320, 1358, 1419, 1436
Eam1104I CTCTTC 7 cut(s) 533, 695, 800, 845, 975, 1023, 1037
EarI CTCTTC 7 cut(s) 533, 695, 800, 845, 975, 1023, 1037
Eco130I CCWWGG 1 cut(s) 1333
Eco24I GRGCYC 2 cut(s) 36, 69
Eco31I GGTCTC 2 cut(s) 170, 182
Eco47I GGWCC 1 cut(s) 442
Eco57I CTGAAG 2 cut(s) 248, 1281
Eco81I CCTNAGG 2 cut(s) 486, 1320
EcoO109I RGGNCCY 1 cut(s) 65
EcoRI GAATTC 2 cut(s) 212, 409
EcoRII CCWGG 3 cut(s) 249, 330, 1387
EcoT14I CCWWGG 1 cut(s) 1333
EcoT38I GRGCYC 2 cut(s) 36, 69
ErhI CCWWGG 1 cut(s) 1333
Esp3I CGTCTC 1 cut(s) 620
FaeI CATG 1 cut(s) 127
FaiI YATR 6 cut(s) 125, 504, 651, 660, 762, 1475
FalI AAGNNNNNCTT 6 cut(s) 997, 1029, 1187, 1219, 1317, 1349
FaqI GGGAC 1 cut(s) 1024
FatI CATG 1 cut(s) 123
FauI CCCGC 2 cut(s) 122, 1501
FbaI TGATCA 2 cut(s) 150, 859
Fnu4HI GCNGC 7 cut(s) 199, 930, 1208, 1233, 1363, 1424, 1433
FokI GGATG 6 cut(s) 323, 692, 755, 1153, 1235, 1355
FriOI GRGCYC 2 cut(s) 36, 69
Fsp4HI GCNGC 7 cut(s) 199, 930, 1208, 1233, 1363, 1424, 1433
FspBI CTAG 2 cut(s) 1089, 1266
GlaI GCGC 2 cut(s) 448, 606
GluI GCNGC 7 cut(s) 199, 930, 1208, 1233, 1363, 1424, 1433
GsaI CCCAGC 4 cut(s) 119, 397, 1342, 1471
GsuI CTGGAG 2 cut(s) 281, 933
HaeIII GGCC 3 cut(s) 67, 317, 1306
HapII CCGG 3 cut(s) 120, 990, 1303
HhaI GCGC 2 cut(s) 449, 607
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 2 cut(s) 447, 605
HinP1I GCGC 2 cut(s) 447, 605
HindIII AAGCTT 1 cut(s) 1500
HpaII CCGG 3 cut(s) 120, 990, 1303
HphI GGTGA 6 cut(s) 470, 709, 910, 1004, 1106, 1255
Hpy188III TCNNGA 3 cut(s) 86, 187, 353
HpyAV CCTTC 6 cut(s) 393, 829, 835, 1027, 1031, 1175
HpyCH4III ACNGT 5 cut(s) 181, 268, 301, 425, 476
HpyCH4IV ACGT 2 cut(s) 462, 629
HpyCH4V TGCA 5 cut(s) 208, 1003, 1262, 1394, 1426
HpyF10VI GCNNNNNNNGC 6 cut(s) 314, 917, 926, 1415, 1429, 1432
HpyF3I CTNAG 8 cut(s) 438, 486, 675, 1309, 1320, 1358, 1419, 1436
HpySE526I ACGT 2 cut(s) 462, 629
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 2 cut(s) 447, 605
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Ksp22I TGATCA 2 cut(s) 150, 859
LmnI GCTCC 7 cut(s) 402, 481, 575, 636, 961, 1261, 1294
Lsp1109I GCAGC 3 cut(s) 941, 1374, 1410
LweI GCATC 3 cut(s) 345, 1131, 1271
MaeI CTAG 2 cut(s) 1089, 1266
MaeII ACGT 2 cut(s) 462, 629
MaeIII GTNAC 2 cut(s) 74, 458
MflI RGATCY 3 cut(s) 82, 88, 1354
MhlI GDGCHC 2 cut(s) 36, 69
MluCI AATT 5 cut(s) 4, 212, 409, 719, 998
MlyI GAGTC 6 cut(s) 365, 443, 950, 1054, 1094, 1112
MmeI TCCRAC 6 cut(s) 393, 399, 438, 510, 847, 1086
MroNI GCCGGC 1 cut(s) 119
MroXI GAANNNNTTC 1 cut(s) 8
MspI CCGG 3 cut(s) 120, 990, 1303
MspR9I CCNGG 3 cut(s) 251, 332, 1389
MvaI CCWGG 3 cut(s) 251, 332, 1389
MvnI CGCG 4 cut(s) 201, 447, 449, 605
MwoI GCNNNNNNNGC 6 cut(s) 314, 917, 926, 1415, 1429, 1432
NaeI GCCGGC 1 cut(s) 121
NgoMIV GCCGGC 1 cut(s) 119
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 7 cut(s) 66, 67, 274, 483, 880, 1257, 1290
NmuCI GTSAC 1 cut(s) 458
PasI CCCWGGG 2 cut(s) 250, 331
PdiI GCCGGC 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 7 cut(s) 200, 931, 1209, 1234, 1364, 1425, 1434
PleI GAGTC 6 cut(s) 365, 442, 949, 1053, 1093, 1111
PpsI GAGTC 6 cut(s) 365, 442, 949, 1053, 1093, 1111
Psp6I CCWGG 3 cut(s) 249, 330, 1387
PspFI CCCAGC 4 cut(s) 115, 393, 1338, 1467
PspGI CCWGG 3 cut(s) 249, 330, 1387
PspN4I GGNNCC 7 cut(s) 66, 67, 274, 483, 880, 1257, 1290
PspOMI GGGCCC 1 cut(s) 65
PspPI GGNCC 5 cut(s) 65, 66, 316, 442, 1305
PsrI GAACNNNNNNTAC 2 cut(s) 413, 445
PstI CTGCAG 1 cut(s) 1428
PsuI RGATCY 3 cut(s) 82, 88, 1354
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SatI GCNGC 7 cut(s) 199, 930, 1208, 1233, 1363, 1424, 1433
Sau96I GGNCC 5 cut(s) 65, 66, 316, 442, 1305
SchI GAGTC 6 cut(s) 365, 443, 950, 1054, 1094, 1112
ScrFI CCNGG 3 cut(s) 251, 332, 1389
SduI GDGCHC 2 cut(s) 36, 69
SfaNI GCATC 3 cut(s) 345, 1131, 1271
SfcI CTRYAG 1 cut(s) 1424
SinI GGWCC 1 cut(s) 442
SmlI CTYRAG 3 cut(s) 563, 665, 1462
SmoI CTYRAG 3 cut(s) 563, 665, 1462
Sse9I AATT 5 cut(s) 4, 212, 409, 719, 998
SsiI CCGC 9 cut(s) 129, 196, 199, 445, 1208, 1232, 1432, 1445, 1494
SspMI CTAG 2 cut(s) 1089, 1266
StyD4I CCNGG 3 cut(s) 249, 330, 1387
StyI CCWWGG 1 cut(s) 1333
TaaI ACNGT 5 cut(s) 181, 268, 301, 425, 476
TaiI ACGT 2 cut(s) 465, 632
TaqI TCGA 6 cut(s) 186, 240, 282, 386, 432, 794
TasI AATT 5 cut(s) 4, 212, 409, 719, 998
TatI WGTACW 1 cut(s) 420
TauI GCSGC 4 cut(s) 201, 1210, 1235, 1435
TscAI CASTG 2 cut(s) 910, 1447
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 3 cut(s) 929, 1362, 1423
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 5 cut(s) 17, 780, 1137, 1386, 1503
TspGWI ACGGA 2 cut(s) 7, 30
TspRI CASTG 2 cut(s) 910, 1447
VpaK11BI GGWCC 1 cut(s) 442
XapI RAATTY 3 cut(s) 4, 212, 409
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 1089, 1266
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.