RchiOBHm_Chr6g0291911

BSD domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
54969924 .. 54972219
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26193

Sequence Viewer

Length: 1458 bp
ATGAATTTCTTCAAGTCCGTATTCGCAGACGAGCCCGATCCGTCAAACCCCGAATCCGACTCAGAATCGGGGCCCACGAGTAACCAAGATCCAGATCCGAAGCCCCAGCCGAGCCAACCCGATCCCAACCCGGCCGGCATTGGCGGGTGGAACTTCGGCGATCTGATCAAAACCATCGCCACCAAGTCCGAGACCGTCATCGATACCTACCGCCGCGACTTGCAGGAATTCGGGTCGGGTCTGAAGAAAGAGATCGAGGTCGCCCAGGGGTCGCTGGAGACAGTCGGCACCAGAATCGATGAGTTGGGCAACACAGTCCTCGCAGGAACGGCCCAGATCATCTCCCAGGGCATCCTCGCCCCCGATCACGAATCCGATTCGTCCGATTCCAACAACACCTCGACCCCCCAGCGGAGCTTGAATTCCAACAAGTACAGTAGGTTCGAGTCTCAGGTGCGCGCGATTCAGGGTGACGCCAGCACCTACTGTGAGGAGCCTGAGGATTTGGAGGAGTATAGGCAGTGGAGATCGGGGTTTGTGTTGGAGGAGAAGAGGGAGGAGATTGAGGGTTTGCTTGAGGGGAATGGAGCAATGGAGAATATTTACAACAAGGTTGCGCCCAATGTGGTTGATGATGAGACGTTTTGGAGCAGGTATTATTATAGGGTGTATAAGCTCAAGCAAGCTGAGGATGTCAGGGCGAATCTAGTGAAGAGGGCGATTTCGGTTGAATTGGAGGAGGAGTTGAGTTGGGATGTTGATGATGATGAGTATGATGAAAGTGAGGGCAATGTGGTTGCGAAATCGAGTCTAGGGAAGAGTAGTGAAGTTGGTGCTGAAGATGTGAAAGAGAAGGAGTTGAAGAGTGATGATCAGGTTGGAGATAAGGGTTCCTCAAAGGTGGGAGAGGTGAGCAGTGTTGCTGAAGAGGCTAATGTGGCAGCGAAAACAGATTCGGTGGAGCAAAAGGTTGTCGAGGAAGAGAGTTCTGGTGAGAAATTGCAAAGTGGGACTTCTGAGGTTGTTGAAGAGAAGGAAGGGAAGAGCCTGAAAGTTGATAATGAGAAGAAAGAAAGTGCTGTGGAGTCTAGTGGTGATAAGGAGTCGGAGAAGAAAAAAGTGAATGTAGAAGGGGATTCTGGGAAGAAAGACTTGCCGCCATCAAAATCGGATGATAAAGCGGCTTTAGAGGTGAAGAATGAGGCTCCTGCATCTAGCAAAGAGAGTGGTGTATCGGCTCCTGCTTCAGTCCGGCCCTCAGTAGAACCTGAGGAAGAAGACCTTGGCTGGGATGAGATTGAGGATCTTAGCAGCATTGATGAAAAGAAAGCAAACCCTGGTGCAAGTGGTGCAAGTGCTAATAGAGCTGAGCTGCAGAAGCGGCTCAGCACTGCGGAAGAAGAAGAAGACTTGAGCTGGGATATAGAAGATGATGATGATGAACCCGCCAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

485

Amino Acids

52.97

Weight (kDa)

4.31

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 175 - 231 2.9e-15 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013426)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 642
AccB1I GGYRCC 1 cut(s) 287
AccII CGCG 3 cut(s) 216, 459, 461
AciI CCGC 9 cut(s) 144, 211, 214, 412, 1157, 1181, 1381, 1394, 1446
AclWI GGATC 5 cut(s) 32, 83, 89, 116, 1311
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 3 cut(s) 4, 227, 421
AcuI CTGAAG 4 cut(s) 263, 858, 945, 1230
AcyI GRCGYC 1 cut(s) 474
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 411, 1288
AgsI TTSAA 5 cut(s) 13, 421, 731, 862, 1028
AjnI CCWGG 3 cut(s) 264, 345, 1336
AjuI GAANNNNNNNTTGG 2 cut(s) 1266, 1298
AluBI AGCT 7 cut(s) 417, 676, 686, 1367, 1372, 1416, 1454
AluI AGCT 7 cut(s) 417, 676, 686, 1367, 1372, 1416, 1454
Alw26I GTCTC 4 cut(s) 185, 272, 453, 632
AlwI GGATC 5 cut(s) 32, 83, 89, 116, 1311
AoxI GGCC 4 cut(s) 71, 132, 330, 1253
ApaI GGGCCC 1 cut(s) 75
ApeKI GCWGC 3 cut(s) 941, 1311, 1372
ApoI RAATTY 3 cut(s) 4, 227, 421
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 3 cut(s) 459, 461, 619
AspS9I GGNCC 4 cut(s) 71, 72, 331, 1254
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 5 cut(s) 482, 922, 1004, 1106, 1204
AxyI CCTNAGG 2 cut(s) 498, 1269
BaeGI GKGCMC 1 cut(s) 75
BanI GGYRCC 1 cut(s) 287
BanII GRGCYC 2 cut(s) 36, 75
BauI CACGAG 1 cut(s) 76
BbsI GAAGAC 2 cut(s) 1284, 1413
BbvCI CCTCAGC 1 cut(s) 687
BbvI GCAGC 3 cut(s) 953, 1323, 1359
BccI CCATC 2 cut(s) 182, 1168
BceAI ACGGC 1 cut(s) 345
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciT130I CCWGG 3 cut(s) 266, 347, 1338
BclI TGATCA 2 cut(s) 165, 871
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 4 cut(s) 185, 272, 453, 632
BfaI CTAG 4 cut(s) 707, 812, 1089, 1215
BfmI CTRYAG 1 cut(s) 1373
BfuAI ACCTGC 1 cut(s) 642
BisI GCNGC 7 cut(s) 214, 942, 1157, 1182, 1312, 1373, 1382
BlpI GCTNAGC 2 cut(s) 1368, 1385
BlsI GCNGC 7 cut(s) 215, 943, 1158, 1183, 1313, 1374, 1383
Bme1390I CCNGG 4 cut(s) 131, 266, 347, 1338
BmgT120I GGNCC 4 cut(s) 71, 72, 331, 1254
BmiI GGNNCC 7 cut(s) 72, 73, 289, 495, 892, 1206, 1239
BmrFI CCNGG 4 cut(s) 131, 266, 347, 1338
BmsI GCATC 2 cut(s) 360, 1220
BpiI GAAGAC 2 cut(s) 1284, 1413
BpmI CTGGAG 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 687
Bpu1102I GCTNAGC 2 cut(s) 1368, 1385
BpuEI CTTGAG 3 cut(s) 596, 662, 1432
BpuMI CCSGG 1 cut(s) 131
Bsa29I ATCGAT 2 cut(s) 201, 297
BsaBI GATNNNNATC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 474
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 6 cut(s) 264, 265, 345, 346, 1282, 1336
BsaXI ACNNNNNCTCC 2 cut(s) 728, 758
Bsc4I CCNNNNNNNGG 2 cut(s) 411, 1288
Bse118I RCCGGY 1 cut(s) 134
Bse21I CCTNAGG 2 cut(s) 498, 1269
Bse3DI GCAATG 2 cut(s) 597, 796
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 3 cut(s) 266, 347, 1338
BseCI ATCGAT 2 cut(s) 201, 297
BseDI CCNNGG 6 cut(s) 264, 265, 345, 346, 1282, 1336
BseGI GGATG 5 cut(s) 351, 697, 760, 1177, 1297
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 2 cut(s) 411, 1288
BseMI GCAATG 2 cut(s) 597, 796
BseMII CTCAG 9 cut(s) 75, 464, 489, 678, 1008, 1260, 1272, 1359, 1399
BsePI GCGCGC 1 cut(s) 457
BseRI GAGGAG 6 cut(s) 506, 524, 560, 572, 752, 755
BseSI GKGCMC 1 cut(s) 75
BseX3I CGGCCG 1 cut(s) 132
BseXI GCAGC 3 cut(s) 953, 1323, 1359
BseYI CCCAGC 4 cut(s) 105, 408, 1287, 1416
Bsh1236I CGCG 3 cut(s) 216, 459, 461
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 4 cut(s) 73, 134, 332, 1255
BshNI GGYRCC 1 cut(s) 287
BshVI ATCGAT 2 cut(s) 201, 297
BsiEI CGRYCG 1 cut(s) 135
BsiSI CCGG 3 cut(s) 131, 135, 1252
BslFI GGGAC 1 cut(s) 1024
BslI CCNNNNNNNGG 2 cut(s) 411, 1288
BsmAI GTCTC 4 cut(s) 185, 272, 453, 632
BsmBI CGTCTC 1 cut(s) 632
BsmFI GGGAC 1 cut(s) 1024
BsnI GGCC 4 cut(s) 73, 134, 332, 1255
Bso31I GGTCTC 1 cut(s) 185
Bsp120I GGGCCC 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 36, 75
Bsp1720I GCTNAGC 2 cut(s) 1368, 1385
BspACI CCGC 9 cut(s) 144, 211, 214, 412, 1157, 1181, 1381, 1394, 1446
BspANI GGCC 4 cut(s) 73, 134, 332, 1255
BspCNI CTCAG 9 cut(s) 74, 463, 490, 679, 1009, 1261, 1271, 1360, 1398
BspDI ATCGAT 2 cut(s) 201, 297
BspFNI CGCG 3 cut(s) 216, 459, 461
BspLI GGNNCC 7 cut(s) 72, 73, 289, 495, 892, 1206, 1239
BspMAI CTGCAG 1 cut(s) 1377
BspMI ACCTGC 1 cut(s) 642
BspPI GGATC 5 cut(s) 32, 83, 89, 116, 1311
BspQI GCTCTTC 1 cut(s) 1037
BspT107I GGYRCC 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 597, 796
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 6 cut(s) 264, 265, 345, 346, 1282, 1336
BssHII GCGCGC 1 cut(s) 457
BssNI GRCGYC 1 cut(s) 474
BssSI CACGAG 1 cut(s) 76
BssT1I CCWWGG 1 cut(s) 1282
Bst2BI CACGAG 1 cut(s) 76
Bst2UI CCWGG 3 cut(s) 266, 347, 1338
Bst4CI ACNGT 5 cut(s) 196, 283, 316, 437, 488
Bst6I CTCTTC 8 cut(s) 545, 707, 812, 857, 921, 975, 1023, 1037
BstACI GRCGYC 1 cut(s) 474
BstAPI GCANNNNNTGC 1 cut(s) 1349
BstC8I GCNNGC 4 cut(s) 136, 459, 478, 684
BstF5I GGATG 5 cut(s) 351, 697, 760, 1177, 1297
BstFNI CGCG 3 cut(s) 216, 459, 461
BstHHI GCGC 3 cut(s) 459, 461, 619
BstMAI GTCTC 4 cut(s) 185, 272, 453, 632
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 7 cut(s) 329, 929, 938, 1349, 1364, 1378, 1381
BstNI CCWGG 3 cut(s) 266, 347, 1338
BstSCI CCNGG 4 cut(s) 129, 264, 345, 1336
BstSFI CTRYAG 1 cut(s) 1373
BstSLI GKGCMC 1 cut(s) 75
BstUI CGCG 3 cut(s) 216, 459, 461
BstV1I GCAGC 3 cut(s) 953, 1323, 1359
BstV2I GAAGAC 2 cut(s) 1284, 1413
BstX2I RGATCY 3 cut(s) 88, 94, 1303
BstYI RGATCY 3 cut(s) 88, 94, 1303
BstZI CGGCCG 1 cut(s) 132
Bsu15I ATCGAT 2 cut(s) 201, 297
Bsu36I CCTNAGG 2 cut(s) 498, 1269
BsuRI GGCC 4 cut(s) 73, 134, 332, 1255
BsuTUI ATCGAT 2 cut(s) 201, 297
BtgZI GCGATG 1 cut(s) 160
BtsCI GGATG 5 cut(s) 351, 697, 760, 1177, 1297
BtsI GCAGTG 3 cut(s) 527, 922, 1389
BtsIMutI CAGTG 3 cut(s) 527, 922, 1389
BveI ACCTGC 1 cut(s) 642
Cac8I GCNNGC 4 cut(s) 136, 459, 478, 684
CfoI GCGC 3 cut(s) 459, 461, 619
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 4 cut(s) 71, 72, 331, 1254
ClaI ATCGAT 2 cut(s) 201, 297
CseI GACGC 1 cut(s) 482
Csp6I GTAC 1 cut(s) 433
CspCI CAANNNNNGTGG 2 cut(s) 1207, 1242
CviQI GTAC 1 cut(s) 433
EaeI YGGCCR 1 cut(s) 132
EagI CGGCCG 1 cut(s) 132
Eam1104I CTCTTC 8 cut(s) 545, 707, 812, 857, 921, 975, 1023, 1037
EarI CTCTTC 8 cut(s) 545, 707, 812, 857, 921, 975, 1023, 1037
EclXI CGGCCG 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 1282
Eco24I GRGCYC 2 cut(s) 36, 75
Eco31I GGTCTC 1 cut(s) 185
Eco52I CGGCCG 1 cut(s) 132
Eco57I CTGAAG 4 cut(s) 263, 858, 945, 1230
Eco81I CCTNAGG 2 cut(s) 498, 1269
EcoO109I RGGNCCY 1 cut(s) 71
EcoRI GAATTC 2 cut(s) 227, 421
EcoRII CCWGG 3 cut(s) 264, 345, 1336
EcoT14I CCWWGG 1 cut(s) 1282
EcoT38I GRGCYC 2 cut(s) 36, 75
ErhI CCWWGG 1 cut(s) 1282
Esp3I CGTCTC 1 cut(s) 632
FaiI YATR 5 cut(s) 516, 663, 672, 774, 1424
FalI AAGNNNNNCTT 6 cut(s) 997, 1029, 1136, 1168, 1266, 1298
FaqI GGGAC 1 cut(s) 1024
FauI CCCGC 2 cut(s) 137, 1453
FbaI TGATCA 2 cut(s) 165, 871
Fnu4HI GCNGC 7 cut(s) 214, 942, 1157, 1182, 1312, 1373, 1382
FokI GGATG 5 cut(s) 338, 704, 767, 1184, 1304
FriOI GRGCYC 2 cut(s) 36, 75
Fsp4HI GCNGC 7 cut(s) 214, 942, 1157, 1182, 1312, 1373, 1382
FspBI CTAG 4 cut(s) 707, 812, 1089, 1215
GlaI GCGC 3 cut(s) 458, 460, 618
GluI GCNGC 7 cut(s) 214, 942, 1157, 1182, 1312, 1373, 1382
GsaI CCCAGC 4 cut(s) 109, 412, 1291, 1420
GsuI CTGGAG 1 cut(s) 296
HaeIII GGCC 4 cut(s) 73, 134, 332, 1255
HapII CCGG 3 cut(s) 131, 135, 1252
HgaI GACGC 1 cut(s) 482
HhaI GCGC 3 cut(s) 459, 461, 619
Hin1I GRCGYC 1 cut(s) 474
Hin6I GCGC 3 cut(s) 457, 459, 617
HinP1I GCGC 3 cut(s) 457, 459, 617
HindIII AAGCTT 1 cut(s) 1452
HpaII CCGG 3 cut(s) 131, 135, 1252
HphI GGTGA 5 cut(s) 482, 922, 1004, 1106, 1204
Hpy188III TCNNGA 2 cut(s) 92, 368
HpyAV CCTTC 4 cut(s) 847, 1027, 1031, 1124
HpyCH4III ACNGT 5 cut(s) 196, 283, 316, 437, 488
HpyCH4IV ACGT 1 cut(s) 641
HpyCH4V TGCA 6 cut(s) 223, 1003, 1211, 1343, 1352, 1375
HpyF10VI GCNNNNNNNGC 7 cut(s) 329, 929, 938, 1349, 1364, 1378, 1381
HpySE526I ACGT 1 cut(s) 641
Hsp92I GRCGYC 1 cut(s) 474
HspAI GCGC 3 cut(s) 457, 459, 617
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
Ksp22I TGATCA 2 cut(s) 165, 871
LguI GCTCTTC 1 cut(s) 1037
LmnI GCTCC 7 cut(s) 414, 493, 587, 648, 961, 1210, 1243
Lsp1109I GCAGC 3 cut(s) 953, 1323, 1359
LweI GCATC 2 cut(s) 360, 1220
MaeI CTAG 4 cut(s) 707, 812, 1089, 1215
MaeII ACGT 1 cut(s) 641
MaeIII GTNAC 2 cut(s) 80, 470
MflI RGATCY 3 cut(s) 88, 94, 1303
MhlI GDGCHC 2 cut(s) 36, 75
MluCI AATT 5 cut(s) 4, 227, 421, 731, 998
MlyI GAGTC 5 cut(s) 53, 455, 817, 1094, 1112
MmeI TCCRAC 6 cut(s) 81, 414, 450, 522, 859, 1086
MroNI GCCGGC 1 cut(s) 134
MroXI GAANNNNTTC 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 3 cut(s) 131, 135, 1252
MspR9I CCNGG 4 cut(s) 131, 266, 347, 1338
MvaI CCWGG 3 cut(s) 266, 347, 1338
MvnI CGCG 3 cut(s) 216, 459, 461
MwoI GCNNNNNNNGC 7 cut(s) 329, 929, 938, 1349, 1364, 1378, 1381
NaeI GCCGGC 1 cut(s) 136
NciI CCSGG 1 cut(s) 131
NgoMIV GCCGGC 1 cut(s) 134
NlaIV GGNNCC 7 cut(s) 72, 73, 289, 495, 892, 1206, 1239
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 470
PasI CCCWGGG 2 cut(s) 265, 346
PauI GCGCGC 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 1037
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PdiI GCCGGC 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 7 cut(s) 215, 943, 1158, 1183, 1313, 1374, 1383
PleI GAGTC 5 cut(s) 53, 454, 816, 1093, 1111
PpsI GAGTC 5 cut(s) 53, 454, 816, 1093, 1111
Psp6I CCWGG 3 cut(s) 264, 345, 1336
PspFI CCCAGC 4 cut(s) 105, 408, 1287, 1416
PspGI CCWGG 3 cut(s) 264, 345, 1336
PspN4I GGNNCC 7 cut(s) 72, 73, 289, 495, 892, 1206, 1239
PspOMI GGGCCC 1 cut(s) 71
PspPI GGNCC 4 cut(s) 71, 72, 331, 1254
PsrI GAACNNNNNNTAC 2 cut(s) 425, 457
PstI CTGCAG 1 cut(s) 1377
PsuI RGATCY 3 cut(s) 88, 94, 1303
PteI GCGCGC 1 cut(s) 457
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
SapI GCTCTTC 1 cut(s) 1037
SatI GCNGC 7 cut(s) 214, 942, 1157, 1182, 1312, 1373, 1382
Sau96I GGNCC 4 cut(s) 71, 72, 331, 1254
SchI GAGTC 5 cut(s) 53, 455, 817, 1094, 1112
ScrFI CCNGG 4 cut(s) 131, 266, 347, 1338
SduI GDGCHC 2 cut(s) 36, 75
SfaNI GCATC 2 cut(s) 360, 1220
SfcI CTRYAG 1 cut(s) 1373
SmlI CTYRAG 3 cut(s) 575, 677, 1411
SmoI CTYRAG 3 cut(s) 575, 677, 1411
Sse9I AATT 5 cut(s) 4, 227, 421, 731, 998
SsiI CCGC 9 cut(s) 144, 211, 214, 412, 1157, 1181, 1381, 1394, 1446
SspI AATATT 1 cut(s) 601
SspMI CTAG 4 cut(s) 707, 812, 1089, 1215
StyD4I CCNGG 4 cut(s) 129, 264, 345, 1336
StyI CCWWGG 1 cut(s) 1282
TaaI ACNGT 5 cut(s) 196, 283, 316, 437, 488
TaiI ACGT 1 cut(s) 644
TaqI TCGA 7 cut(s) 201, 255, 297, 401, 444, 806, 975
TasI AATT 5 cut(s) 4, 227, 421, 731, 998
TatI WGTACW 1 cut(s) 432
TauI GCSGC 4 cut(s) 216, 1159, 1184, 1384
TscAI CASTG 3 cut(s) 527, 922, 1396
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 3 cut(s) 941, 1311, 1372
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 4 cut(s) 17, 792, 1335, 1455
TspGWI ACGGA 2 cut(s) 7, 30
TspRI CASTG 3 cut(s) 527, 922, 1396
XapI RAATTY 3 cut(s) 4, 227, 421
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 4 cut(s) 707, 812, 1089, 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.