Rroxscaffold_7G00175630

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013426
Physical Location & Seq
Forward (+)
15124565 .. 15126075
1511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00175630.1

Sequence Viewer

Length: 1290 bp
ATGAATTTCTTCAAGTCCGTATTCGCAGACGAGCCCGATCCGTCAAACCCCGAATCCGAATCCGAATCGGGGCCCACCAGTAACCAAGATCCAGATCCGAAGCCCCAACCCGATCCCAACCCAGCCGGCATTGGCGGGTGGAACTTGGGCGATCTGATCAAAACCATCGCCACCAAGTCCGAGACCGTCATCGAGACCTACCGCCGCGACTTGCAGGAATTCGGGTCGGGTCTGAAGAAAGAGATCGAGGTCGCCCAGGGGTCGCTGGAGACAGTCGGCACCAGAATCGATGAGTTGGGCAACACGGTGCGCGCGATTCAGGGTGACGTCAGCACCTACTGTGAGGAGCCTGAGGATTTGGAGGAGTATAGGAAGTGGAAATCGGGGTTTGTGTTGGAGGAGAAGAGGGAGGAGATTGAGGGTTTGCTCGAAGGGAATGGAGCAATGGAGGGTATTTACAACAAGGTTGCGCCGAATGTAGTTGATGATGAGACGTTTTGGAGCAGGTATTATTATAGGGTGTATAAGCTCAAGCAAGCTGAGGATGTTAGGGCGAATCTGGTGAAGAGGGCGATTTCGGTTGAATTGGAGGAGGAGTTGAGTTGGGATGTTGATGATGATGAGTATGATGAAAGTGATGGCAATGCGGTTGCGAAGTCGTCGAGTTTAGGGAAGAGTAGTGAAGTGGCAGCTGAAGATGGTGGTGGAGTTGTCAAGGAGGAGGAGTTGAAGAGTGATGATCAAGTTGGAGATAAGGGTTCCTCAAAGTGCGGCGTTGCTGGAGAGGCTAATGTGGCACCGAAAACAGAGTCGGTTAGCAAAGATTTGGAGCGAAAGGTTGTCAAGGAAGAGAGTTCCGGTGAGAAATTGCATAGTGGGACTTCGGAGGTTGTTGAAGAGAGAAGGAAGGGAAGAGGGGATTCTGGGATGCCATCAAAATCTGGTGAGGAGAAGAAAGTGAATGTAGAAGGGGATTCTGGGAAGAAAGACTTGCCGCCATCAAAATCGGATGATAAAGCGGCTTTAGAGGTGAAGAATGAGGCTCCTGCATCTAGCAAAGAGAGTGGTGTATCGGCTGCTTCAGTCCGGCCCTCAGTAGAACCTGAGGAAGAAGACCTTGGCTGGGATGAGATTGAGGATCTTAGCAGCATTGATGAAAAGAAAGCGAACCCTGGTGCAAGTGGTGGAAGTGCTAATAGAGCTGAGCTGCAGAAGCGGCTCAGCACTGCGGAAGAAGAAGAAGACTTGAGTTGGGATATAGATGATGATGATGAACCCGCCAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

429

Amino Acids

46.67

Weight (kDa)

4.38

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 126 - 182 3.4e-15 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013426)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03350
fragaria_vesca FvH4_2g24111
malus_domestica MD03G1271200.v1.1
prunus_persica Prupe.8G247300_v2.0.a1
pyrus_communis pycom03g21590 pycom11g25850
rosa_chinensis RchiOBHm_Chr6g0291911
rosa_laevigata RLG00000012079
rosa_multiflora Rmu_co8044656.1_g000001 Rmu_sc0016851.1_g000001 Rmu_sc0030145.1_g000001
rosa_roxburghii Rroxscaffold_7G00175630
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG335300 Rh6BG342700 Rh6CG348900 Rh6DG335600
rosa_wichuraiana Rw6G029180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 330
Acc36I ACCTGC 1 cut(s) 495
AccB1I GGYRCC 2 cut(s) 278, 796
AccII CGCG 3 cut(s) 207, 312, 314
AclWI GGATC 5 cut(s) 32, 83, 89, 107, 1146
AcsI RAATTY 2 cut(s) 4, 218
AcuI CTGAAG 3 cut(s) 254, 714, 1065
AcyI GRCGYC 1 cut(s) 327
AfiI CCNNNNNNNGG 2 cut(s) 69, 1123
AgsI TTSAA 4 cut(s) 13, 584, 730, 896
AjnI CCWGG 2 cut(s) 255, 1171
AjuI GAANNNNNNNTTGG 2 cut(s) 1101, 1133
AluBI AGCT 6 cut(s) 529, 539, 692, 1202, 1207, 1286
AluI AGCT 6 cut(s) 529, 539, 692, 1202, 1207, 1286
Alw26I GTCTC 4 cut(s) 176, 188, 263, 485
AlwI GGATC 5 cut(s) 32, 83, 89, 107, 1146
AoxI GGCC 2 cut(s) 71, 1088
ApaI GGGCCC 1 cut(s) 75
ApeKI GCWGC 4 cut(s) 689, 1076, 1146, 1207
ApoI RAATTY 2 cut(s) 4, 218
ArsI GACNNNNNNTTYG 2 cut(s) 794, 826
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 3 cut(s) 312, 314, 472
AspS9I GGNCC 3 cut(s) 71, 72, 1089
AsuHPI GGTGA 5 cut(s) 335, 574, 872, 956, 1042
AxyI CCTNAGG 2 cut(s) 351, 1104
BaeGI GKGCMC 1 cut(s) 75
BanI GGYRCC 2 cut(s) 278, 796
BanII GRGCYC 2 cut(s) 36, 75
BbsI GAAGAC 2 cut(s) 1119, 1248
BbvCI CCTCAGC 1 cut(s) 540
BbvI GCAGC 4 cut(s) 701, 1063, 1158, 1194
BccI CCATC 5 cut(s) 173, 632, 692, 940, 1006
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 2 cut(s) 257, 1173
BclI TGATCA 2 cut(s) 156, 739
BcoDI GTCTC 4 cut(s) 176, 188, 263, 485
BfaI CTAG 1 cut(s) 1053
BfmI CTRYAG 1 cut(s) 1208
BfuAI ACCTGC 1 cut(s) 495
BisI GCNGC 9 cut(s) 205, 690, 772, 995, 1020, 1077, 1147, 1208, 1217
BlpI GCTNAGC 2 cut(s) 1203, 1220
BlsI GCNGC 9 cut(s) 206, 691, 773, 996, 1021, 1078, 1148, 1209, 1218
Bme1390I CCNGG 2 cut(s) 257, 1173
BmgT120I GGNCC 3 cut(s) 71, 72, 1089
BmiI GGNNCC 7 cut(s) 72, 73, 280, 348, 760, 798, 1044
BmrFI CCNGG 2 cut(s) 257, 1173
BmsI GCATC 2 cut(s) 918, 1058
BpiI GAAGAC 2 cut(s) 1119, 1248
BpmI CTGGAG 2 cut(s) 287, 801
Bpu10I CCTNAGC 1 cut(s) 540
Bpu1102I GCTNAGC 2 cut(s) 1203, 1220
BpuEI CTTGAG 2 cut(s) 515, 1267
Bsa29I ATCGAT 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 327
BsaI GGTCTC 2 cut(s) 176, 188
BsaJI CCNNGG 4 cut(s) 255, 256, 1117, 1171
BsaWI WCCGGW 1 cut(s) 857
BsaXI ACNNNNNCTCC 4 cut(s) 581, 611, 710, 740
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 1123
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 78
Bse21I CCTNAGG 2 cut(s) 351, 1104
Bse3DI GCAATG 2 cut(s) 450, 649
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 2 cut(s) 257, 1173
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 4 cut(s) 255, 256, 1117, 1171
BseGI GGATG 5 cut(s) 550, 613, 933, 1015, 1132
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 2 cut(s) 69, 1123
BseMI GCAATG 2 cut(s) 450, 649
BseMII CTCAG 6 cut(s) 342, 531, 1095, 1107, 1194, 1234
BseNI ACTGG 1 cut(s) 78
BsePI GCGCGC 1 cut(s) 310
BseRI GAGGAG 9 cut(s) 359, 377, 413, 425, 605, 608, 734, 737, 962
BseSI GKGCMC 1 cut(s) 75
BseXI GCAGC 4 cut(s) 701, 1063, 1158, 1194
BseYI CCCAGC 2 cut(s) 121, 1122
Bsh1236I CGCG 3 cut(s) 207, 312, 314
BshFI GGCC 2 cut(s) 73, 1090
BshNI GGYRCC 2 cut(s) 278, 796
BshVI ATCGAT 1 cut(s) 288
BsiSI CCGG 3 cut(s) 126, 858, 1087
BslFI GGGAC 1 cut(s) 892
BslI CCNNNNNNNGG 2 cut(s) 69, 1123
BsmAI GTCTC 4 cut(s) 176, 188, 263, 485
BsmBI CGTCTC 1 cut(s) 485
BsmFI GGGAC 1 cut(s) 892
BsnI GGCC 2 cut(s) 73, 1090
Bso31I GGTCTC 2 cut(s) 176, 188
Bsp120I GGGCCC 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 36, 75
Bsp143I GATC 9 cut(s) 37, 88, 94, 112, 151, 156, 243, 739, 1138
Bsp1720I GCTNAGC 2 cut(s) 1203, 1220
BspANI GGCC 2 cut(s) 73, 1090
BspCNI CTCAG 6 cut(s) 343, 532, 1096, 1106, 1195, 1233
BspDI ATCGAT 1 cut(s) 288
BspFNI CGCG 3 cut(s) 207, 312, 314
BspLI GGNNCC 7 cut(s) 72, 73, 280, 348, 760, 798, 1044
BspMAI CTGCAG 1 cut(s) 1212
BspMI ACCTGC 1 cut(s) 495
BspPI GGATC 5 cut(s) 32, 83, 89, 107, 1146
BspT107I GGYRCC 2 cut(s) 278, 796
BspTNI GGTCTC 2 cut(s) 176, 188
BsrDI GCAATG 2 cut(s) 450, 649
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 4 cut(s) 255, 256, 1117, 1171
BssHII GCGCGC 1 cut(s) 310
BssMI GATC 9 cut(s) 37, 88, 94, 112, 151, 156, 243, 739, 1138
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 1117
Bst2UI CCWGG 2 cut(s) 257, 1173
Bst4CI ACNGT 4 cut(s) 187, 274, 307, 341
Bst6I CTCTTC 7 cut(s) 398, 560, 668, 725, 843, 891, 907
BstACI GRCGYC 1 cut(s) 327
BstC8I GCNNGC 3 cut(s) 127, 312, 537
BstDEI CTNAG 7 cut(s) 351, 540, 1093, 1104, 1142, 1203, 1220
BstF5I GGATG 5 cut(s) 550, 613, 933, 1015, 1132
BstFNI CGCG 3 cut(s) 207, 312, 314
BstHHI GCGC 3 cut(s) 312, 314, 472
BstKTI GATC 9 cut(s) 40, 91, 97, 115, 154, 159, 246, 742, 1141
BstMAI GTCTC 4 cut(s) 176, 188, 263, 485
BstMBI GATC 9 cut(s) 37, 88, 94, 112, 151, 156, 243, 739, 1138
BstMWI GCNNNNNNNGC 5 cut(s) 785, 794, 1199, 1213, 1216
BstNI CCWGG 2 cut(s) 257, 1173
BstSCI CCNGG 2 cut(s) 255, 1171
BstSFI CTRYAG 1 cut(s) 1208
BstSLI GKGCMC 1 cut(s) 75
BstUI CGCG 3 cut(s) 207, 312, 314
BstV1I GCAGC 4 cut(s) 701, 1063, 1158, 1194
BstV2I GAAGAC 2 cut(s) 1119, 1248
BstX2I RGATCY 3 cut(s) 88, 94, 1138
BstYI RGATCY 3 cut(s) 88, 94, 1138
Bsu15I ATCGAT 1 cut(s) 288
Bsu36I CCTNAGG 2 cut(s) 351, 1104
BsuRI GGCC 2 cut(s) 73, 1090
BsuTUI ATCGAT 1 cut(s) 288
BtgZI GCGATG 1 cut(s) 151
BtsCI GGATG 5 cut(s) 550, 613, 933, 1015, 1132
BtsI GCAGTG 1 cut(s) 1224
BtsIMutI CAGTG 1 cut(s) 1224
BveI ACCTGC 1 cut(s) 495
Cac8I GCNNGC 3 cut(s) 127, 312, 537
CfoI GCGC 3 cut(s) 312, 314, 472
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 3 cut(s) 71, 72, 1089
ClaI ATCGAT 1 cut(s) 288
CspCI CAANNNNNGTGG 2 cut(s) 1045, 1080
DdeI CTNAG 7 cut(s) 351, 540, 1093, 1104, 1142, 1203, 1220
DpnI GATC 9 cut(s) 39, 90, 96, 114, 153, 158, 245, 741, 1140
DpnII GATC 9 cut(s) 37, 88, 94, 112, 151, 156, 243, 739, 1138
Eam1104I CTCTTC 7 cut(s) 398, 560, 668, 725, 843, 891, 907
EarI CTCTTC 7 cut(s) 398, 560, 668, 725, 843, 891, 907
Eco130I CCWWGG 1 cut(s) 1117
Eco24I GRGCYC 2 cut(s) 36, 75
Eco31I GGTCTC 2 cut(s) 176, 188
Eco57I CTGAAG 3 cut(s) 254, 714, 1065
Eco81I CCTNAGG 2 cut(s) 351, 1104
EcoO109I RGGNCCY 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 2 cut(s) 255, 1171
EcoT14I CCWWGG 1 cut(s) 1117
EcoT38I GRGCYC 2 cut(s) 36, 75
ErhI CCWWGG 1 cut(s) 1117
Esp3I CGTCTC 1 cut(s) 485
FaiI YATR 6 cut(s) 369, 516, 525, 627, 873, 1259
FalI AAGNNNNNCTT 4 cut(s) 974, 1006, 1101, 1133
FaqI GGGAC 1 cut(s) 892
FauI CCCGC 2 cut(s) 128, 1285
FbaI TGATCA 2 cut(s) 156, 739
Fnu4HI GCNGC 9 cut(s) 205, 690, 772, 995, 1020, 1077, 1147, 1208, 1217
FokI GGATG 5 cut(s) 557, 620, 940, 1022, 1139
FriOI GRGCYC 2 cut(s) 36, 75
Fsp4HI GCNGC 9 cut(s) 205, 690, 772, 995, 1020, 1077, 1147, 1208, 1217
FspBI CTAG 1 cut(s) 1053
GlaI GCGC 3 cut(s) 311, 313, 471
GluI GCNGC 9 cut(s) 205, 690, 772, 995, 1020, 1077, 1147, 1208, 1217
GsaI CCCAGC 2 cut(s) 125, 1126
GsuI CTGGAG 2 cut(s) 287, 801
HaeIII GGCC 2 cut(s) 73, 1090
HapII CCGG 3 cut(s) 126, 858, 1087
HhaI GCGC 3 cut(s) 312, 314, 472
Hin1I GRCGYC 1 cut(s) 327
Hin6I GCGC 3 cut(s) 310, 312, 470
HinP1I GCGC 3 cut(s) 310, 312, 470
HindIII AAGCTT 1 cut(s) 1284
HinfI GANTC 9 cut(s) 53, 59, 65, 285, 316, 556, 809, 920, 974
HpaII CCGG 3 cut(s) 126, 858, 1087
HphI GGTGA 5 cut(s) 335, 574, 872, 956, 1042
Hpy188I TCNGA 8 cut(s) 58, 64, 99, 156, 181, 234, 886, 1009
Hpy188III TCNNGA 2 cut(s) 92, 193
Hpy99I CGWCG 1 cut(s) 664
HpyAV CCTTC 4 cut(s) 425, 897, 901, 962
HpyCH4III ACNGT 4 cut(s) 187, 274, 307, 341
HpyCH4IV ACGT 2 cut(s) 327, 494
HpyCH4V TGCA 5 cut(s) 214, 871, 1049, 1178, 1210
HpyF10VI GCNNNNNNNGC 5 cut(s) 785, 794, 1199, 1213, 1216
HpyF3I CTNAG 7 cut(s) 351, 540, 1093, 1104, 1142, 1203, 1220
HpySE526I ACGT 2 cut(s) 327, 494
Hsp92I GRCGYC 1 cut(s) 327
HspAI GCGC 3 cut(s) 310, 312, 470
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Ksp22I TGATCA 2 cut(s) 156, 739
Kzo9I GATC 9 cut(s) 37, 88, 94, 112, 151, 156, 243, 739, 1138
LmnI GCTCC 5 cut(s) 346, 440, 501, 829, 1048
Lsp1109I GCAGC 4 cut(s) 701, 1063, 1158, 1194
LweI GCATC 2 cut(s) 918, 1058
MaeI CTAG 1 cut(s) 1053
MaeII ACGT 2 cut(s) 327, 494
MaeIII GTNAC 2 cut(s) 80, 323
MalI GATC 9 cut(s) 39, 90, 96, 114, 153, 158, 245, 741, 1140
MboI GATC 9 cut(s) 37, 88, 94, 112, 151, 156, 243, 739, 1138
MflI RGATCY 3 cut(s) 88, 94, 1138
MhlI GDGCHC 2 cut(s) 36, 75
MluCI AATT 4 cut(s) 4, 218, 584, 866
MlyI GAGTC 1 cut(s) 818
MmeI TCCRAC 2 cut(s) 375, 727
MroNI GCCGGC 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 692
MspI CCGG 3 cut(s) 126, 858, 1087
MspR9I CCNGG 2 cut(s) 257, 1173
MvaI CCWGG 2 cut(s) 257, 1173
MvnI CGCG 3 cut(s) 207, 312, 314
MwoI GCNNNNNNNGC 5 cut(s) 785, 794, 1199, 1213, 1216
NaeI GCCGGC 1 cut(s) 127
NdeII GATC 9 cut(s) 37, 88, 94, 112, 151, 156, 243, 739, 1138
NgoMIV GCCGGC 1 cut(s) 125
NlaIV GGNNCC 7 cut(s) 72, 73, 280, 348, 760, 798, 1044
NmuCI GTSAC 1 cut(s) 323
PasI CCCWGGG 1 cut(s) 256
PauI GCGCGC 1 cut(s) 310
PcsI WCGNNNNNNNCGW 1 cut(s) 311
PdiI GCCGGC 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 8 cut(s) 53, 59, 65, 285, 316, 556, 920, 974
PkrI GCNGC 9 cut(s) 206, 691, 773, 996, 1021, 1078, 1148, 1209, 1218
PleI GAGTC 1 cut(s) 817
PpsI GAGTC 1 cut(s) 817
Psp6I CCWGG 2 cut(s) 255, 1171
PspFI CCCAGC 2 cut(s) 121, 1122
PspGI CCWGG 2 cut(s) 255, 1171
PspN4I GGNNCC 7 cut(s) 72, 73, 280, 348, 760, 798, 1044
PspOMI GGGCCC 1 cut(s) 71
PspPI GGNCC 3 cut(s) 71, 72, 1089
PstI CTGCAG 1 cut(s) 1212
PsuI RGATCY 3 cut(s) 88, 94, 1138
PteI GCGCGC 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 692
SatI GCNGC 9 cut(s) 205, 690, 772, 995, 1020, 1077, 1147, 1208, 1217
Sau3AI GATC 9 cut(s) 37, 88, 94, 112, 151, 156, 243, 739, 1138
Sau96I GGNCC 3 cut(s) 71, 72, 1089
SchI GAGTC 1 cut(s) 818
ScrFI CCNGG 2 cut(s) 257, 1173
SduI GDGCHC 2 cut(s) 36, 75
SfaNI GCATC 2 cut(s) 918, 1058
SfcI CTRYAG 1 cut(s) 1208
SmlI CTYRAG 2 cut(s) 530, 1246
SmoI CTYRAG 2 cut(s) 530, 1246
Sse9I AATT 4 cut(s) 4, 218, 584, 866
SspMI CTAG 1 cut(s) 1053
StyD4I CCNGG 2 cut(s) 255, 1171
StyI CCWWGG 1 cut(s) 1117
TaaI ACNGT 4 cut(s) 187, 274, 307, 341
TaiI ACGT 2 cut(s) 330, 497
TaqI TCGA 5 cut(s) 192, 246, 288, 429, 662
TasI AATT 4 cut(s) 4, 218, 584, 866
TauI GCSGC 5 cut(s) 207, 774, 997, 1022, 1219
TfiI GAWTC 8 cut(s) 53, 59, 65, 285, 316, 556, 920, 974
TscAI CASTG 1 cut(s) 1231
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 4 cut(s) 689, 1076, 1146, 1207
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 4 cut(s) 17, 645, 1170, 1287
TspGWI ACGGA 2 cut(s) 7, 30
TspRI CASTG 1 cut(s) 1231
XapI RAATTY 2 cut(s) 4, 218
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 1053
ZraI GACGTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.