Prupe.8G247300_v2.0.a1

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013426
Physical Location & Seq
Reverse (-)
21405556 .. 21407120
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G247300.1

Sequence Viewer

Length: 1518 bp
ATGAATTTCTTCAAGTCCGTATTCTCTGATGAACCAGATCCTCCAAATCCGGATTCCGAATCCGAATCTGAACCCGAGTCTCGTAAGAACCCAGAACAAGAAGATGCAGATTCGAAATCCCCACCAAGCCAACCCGATCCAAACCCAAGTAGCAATAGTGGCGGGTGGATGTTTGGTGATCTTATCAAAACCCTAGCGACCAAATCCGAGTCGGTGATCGAGACCTACCGTCGCGACCTCCAGGAATTCGGGTCGGGTCTGAAGAAAGAGATCGAGGTGGCTCAGGGGTCGTTGGAGACAGTTGGGAGCGTCATTGATGAGTTTGGCAACACCGTCTTGAAAGGGACGGCCCAGATCATCTCTCAAGGTACGGACGCGATCCTCGCCCCTGATCACGTATCAGATTCCTCCGATCCCAACAGTCAGAGCTTTAGCTCTCAGCAGGGCTTGAATTCGAAACGGTACAGTCGGTTTGACGTTCAGGTCCGTGCGATTCAAGGTGACGCCGGAACTTACTGTGAGGAACCTGAGGATTTGGATGAATTTAACAAATGGAAATCAGGGTTTGTTTTGGAAGACAAAAGTGAAGAAATTGAGGGGCTGTTTGAAGAAAATGGAGCTATGGAGAGCATTTACAAAAGGGTCGTTCCAAGTAGCGTTGATCATGAAACCTTTTGGTGTAGGTACTTTTACAGGGTTTATAAGCTCAGGCAAGCTGAGGATGTTAGAGCCAATCTTGTTAAGCGGGCAATTTCGATTGAAGAAGATGAGGAATTGAGTTGGGATGTTGATGATGAAGAGTATGATGAAAGTGTGAGCAATGTGGTGTCGAAAGCGAATTCAGCGAAAAATACTGAAGGGGCTGCTTCTGGTAAAGTTGAGAAAGTTGAGGACTTGAAGGTTGATAGTGAGGTTGGTGATAAGAGTTCCTCTAATGTGGGAGAGGTGAGCAGTGTGGGTGAAGAGGCTAATGTGTGGTCGAAGAAGGGTGATTTAGCGGCAAATAGGGAGTTGGTCAGCAAAGATTCTGAGCAAATGAATGTCAAGGAAGAGAGCAGCTCTGTTGAGGAATCTCAAGTTGCTGGGACTTCTTCCAGTGTTGTTGATGAGAAGGGAGGGAAGAGCCCTGAAATGGATAAAGAGAAGAAGGATAGTGCTGTGAAGTTGAGTGGTGATAAGGAGACTGAAAAGAAAGTTATTGTAGAAGGAGACTCTGGGAAGAAAGATTTGCCATCGAAGTCTGAGGAGAAAGTGGCTTTGGAGGGGAAGAATGAGGCTCTTGAATCTGGCGATGCTTCGGTTGTTTCAAACCGGTCCTCAGCGCCGGAGGAAGAAGACCTTGGCTGGGATGAGATTGAGGATCTTAGCGGCATTGATGAAAAGAAGGTGACCCATGTTGGAAGTGGAAGTTCTAATAAAGCTGACCTGCGGAAGCGGCTCAGCACTGCTGAAGAAGAAGAAGAAGAAGACTTGAGCTGGGATATCGAGGATGAAGATGATGAACCAGCTAAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

506

Amino Acids

55.45

Weight (kDa)

4.34

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013426)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03350
fragaria_vesca FvH4_2g24111
malus_domestica MD03G1271200.v1.1
prunus_persica Prupe.8G247300_v2.0.a1
pyrus_communis pycom03g21590 pycom11g25850
rosa_chinensis RchiOBHm_Chr6g0291911
rosa_laevigata RLG00000012079
rosa_multiflora Rmu_co8044656.1_g000001 Rmu_sc0016851.1_g000001 Rmu_sc0030145.1_g000001
rosa_roxburghii Rroxscaffold_7G00175630
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG335300 Rh6BG342700 Rh6CG348900 Rh6DG335600
rosa_wichuraiana Rw6G029180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 702
AasI GACNNNNNNGTC 1 cut(s) 482
Acc36I ACCTGC 1 cut(s) 1434
AccII CGCG 2 cut(s) 234, 377
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 6 cut(s) 162, 745, 998, 1368, 1429, 1435
AclWI GGATC 5 cut(s) 32, 131, 373, 407, 1368
AcsI RAATTY 5 cut(s) 4, 245, 451, 542, 838
AcuI CTGAAG 3 cut(s) 281, 876, 1470
AcyI GRCGYC 1 cut(s) 504
AfaI GTAC 3 cut(s) 370, 464, 686
AfiI CCNNNNNNNGG 2 cut(s) 1132, 1345
AgeI ACCGGT 1 cut(s) 1311
AgsI TTSAA 9 cut(s) 13, 340, 451, 497, 608, 761, 898, 1283, 1308
AhdI GACNNNNNGTC 1 cut(s) 228
AjnI CCWGG 1 cut(s) 240
AjuI GAANNNNNNNTTGG 6 cut(s) 37, 69, 1241, 1273, 1323, 1355
AluBI AGCT 9 cut(s) 429, 435, 620, 706, 716, 1059, 1421, 1476, 1508
AluI AGCT 9 cut(s) 429, 435, 620, 706, 716, 1059, 1421, 1476, 1508
Alw26I GTCTC 5 cut(s) 84, 215, 290, 1175, 1203
AlwI GGATC 5 cut(s) 32, 131, 373, 407, 1368
Ama87I CYCGRG 1 cut(s) 74
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 2 cut(s) 863, 1056
ApoI RAATTY 5 cut(s) 4, 245, 451, 542, 838
AsiGI ACCGGT 1 cut(s) 1311
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 1324
AspS9I GGNCC 3 cut(s) 349, 484, 1314
AsuHPI GGTGA 9 cut(s) 188, 226, 512, 929, 958, 971, 1001, 1184, 1399
AsuII TTCGAA 2 cut(s) 113, 455
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 2 cut(s) 484, 1314
AxyI CCTNAGG 1 cut(s) 528
BanII GRGCYC 1 cut(s) 1127
BbsI GAAGAC 3 cut(s) 582, 1341, 1473
BbvCI CCTCAGC 2 cut(s) 717, 1318
BbvI GCAGC 2 cut(s) 850, 1068
BccI CCATC 1 cut(s) 1240
BceAI ACGGC 1 cut(s) 363
BciT130I CCWGG 1 cut(s) 242
BclI TGATCA 2 cut(s) 391, 661
BcoDI GTCTC 5 cut(s) 84, 215, 290, 1175, 1203
BfaI CTAG 1 cut(s) 194
BfoI RGCGCY 1 cut(s) 1325
BfuAI ACCTGC 1 cut(s) 1434
BisI GCNGC 5 cut(s) 864, 999, 1057, 1369, 1436
BlpI GCTNAGC 1 cut(s) 1439
BlsI GCNGC 5 cut(s) 865, 1000, 1058, 1370, 1437
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 2 cut(s) 484, 1314
BmeRI GACNNNNNGTC 1 cut(s) 228
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 3 cut(s) 349, 484, 1314
BmiI GGNNCC 1 cut(s) 525
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 2 cut(s) 94, 1282
BpiI GAAGAC 3 cut(s) 582, 1341, 1473
BplI GAGNNNNNCTC 2 cut(s) 1043, 1075
BpmI CTGGAG 1 cut(s) 224
Bpu10I CCTNAGC 4 cut(s) 282, 707, 717, 1318
Bpu1102I GCTNAGC 1 cut(s) 1439
Bpu14I TTCGAA 2 cut(s) 113, 455
BpuEI CTTGAG 3 cut(s) 348, 1059, 1492
BsaAI YACGTR 1 cut(s) 397
BsaHI GRCGYC 1 cut(s) 504
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 1339
BsaWI WCCGGW 2 cut(s) 49, 1311
Bsc4I CCNNNNNNNGG 2 cut(s) 1132, 1345
Bse118I RCCGGY 1 cut(s) 1311
Bse1I ACTGG 1 cut(s) 1095
Bse21I CCTNAGG 1 cut(s) 528
Bse3DI GCAATG 1 cut(s) 826
BseAI TCCGGA 1 cut(s) 49
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 1339
BseGI GGATG 6 cut(s) 174, 544, 727, 790, 1354, 1495
BseLI CCNNNNNNNGG 2 cut(s) 1132, 1345
BseMI GCAATG 1 cut(s) 826
BseMII CTCAG 9 cut(s) 296, 452, 519, 708, 721, 1020, 1233, 1332, 1453
BseNI ACTGG 1 cut(s) 1095
BseRI GAGGAG 1 cut(s) 1259
BseXI GCAGC 2 cut(s) 850, 1068
BseYI CCCAGC 3 cut(s) 1082, 1344, 1476
Bsh1236I CGCG 2 cut(s) 234, 377
BshFI GGCC 1 cut(s) 350
BshTI ACCGGT 1 cut(s) 1311
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 4 cut(s) 50, 507, 1312, 1325
BslFI GGGAC 2 cut(s) 358, 1099
BslI CCNNNNNNNGG 2 cut(s) 1132, 1345
BsmAI GTCTC 5 cut(s) 84, 215, 290, 1175, 1203
BsmFI GGGAC 2 cut(s) 358, 1099
BsnI GGCC 1 cut(s) 350
Bso31I GGTCTC 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 74
Bsp119I TTCGAA 2 cut(s) 113, 455
Bsp1286I GDGCHC 1 cut(s) 1127
Bsp13I TCCGGA 1 cut(s) 49
Bsp1720I GCTNAGC 1 cut(s) 1439
Bsp68I TCGCGA 1 cut(s) 234
BspACI CCGC 6 cut(s) 162, 745, 998, 1368, 1429, 1435
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 9 cut(s) 295, 451, 520, 709, 720, 1021, 1234, 1331, 1452
BspEI TCCGGA 1 cut(s) 49
BspFNI CGCG 2 cut(s) 234, 377
BspHI TCATGA 1 cut(s) 664
BspLI GGNNCC 1 cut(s) 525
BspMI ACCTGC 1 cut(s) 1434
BspPI GGATC 5 cut(s) 32, 131, 373, 407, 1368
BspQI GCTCTTC 1 cut(s) 1115
BspT104I TTCGAA 2 cut(s) 113, 455
BspTNI GGTCTC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 826
BsrFI RCCGGY 1 cut(s) 1311
BsrI ACTGG 1 cut(s) 1095
BssAI RCCGGY 1 cut(s) 1311
BssECI CCNNGG 1 cut(s) 1339
BssNI GRCGYC 1 cut(s) 504
BssT1I CCWWGG 1 cut(s) 1339
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 7 cut(s) 230, 301, 334, 422, 462, 467, 518
Bst6I CTCTTC 4 cut(s) 792, 957, 1044, 1115
BstACI GRCGYC 1 cut(s) 504
BstBAI YACGTR 1 cut(s) 397
BstBI TTCGAA 2 cut(s) 113, 455
BstC8I GCNNGC 2 cut(s) 714, 747
BstEII GGTNACC 1 cut(s) 1387
BstF5I GGATG 6 cut(s) 174, 544, 727, 790, 1354, 1495
BstFNI CGCG 2 cut(s) 234, 377
BstH2I RGCGCY 1 cut(s) 1325
BstHHI GCGC 1 cut(s) 1324
BstMAI GTCTC 5 cut(s) 84, 215, 290, 1175, 1203
BstMWI GCNNNNNNNGC 4 cut(s) 159, 383, 842, 1435
BstNI CCWGG 1 cut(s) 242
BstPI GGTNACC 1 cut(s) 1387
BstSCI CCNGG 1 cut(s) 240
BstUI CGCG 2 cut(s) 234, 377
BstV1I GCAGC 2 cut(s) 850, 1068
BstV2I GAAGAC 3 cut(s) 582, 1341, 1473
BstX2I RGATCY 2 cut(s) 37, 1360
BstYI RGATCY 2 cut(s) 37, 1360
Bsu36I CCTNAGG 1 cut(s) 528
BsuRI GGCC 1 cut(s) 350
BtgZI GCGATG 1 cut(s) 1305
BtsCI GGATG 6 cut(s) 174, 544, 727, 790, 1354, 1495
BtsI GCAGTG 2 cut(s) 958, 1443
BtsIMutI CAGTG 3 cut(s) 958, 1102, 1443
BtuMI TCGCGA 1 cut(s) 234
BveI ACCTGC 1 cut(s) 1434
Cac8I GCNNGC 2 cut(s) 714, 747
CciI TCATGA 1 cut(s) 664
CfoI GCGC 1 cut(s) 1324
Cfr10I RCCGGY 1 cut(s) 1311
Cfr13I GGNCC 3 cut(s) 349, 484, 1314
CseI GACGC 3 cut(s) 298, 383, 512
Csp6I GTAC 3 cut(s) 369, 463, 685
CspAI ACCGGT 1 cut(s) 1311
CviAII CATG 2 cut(s) 665, 1394
CviQI GTAC 3 cut(s) 369, 463, 685
DrdI GACNNNNNNGTC 1 cut(s) 482
DriI GACNNNNNGTC 1 cut(s) 228
DseDI GACNNNNNNGTC 1 cut(s) 482
Eam1104I CTCTTC 4 cut(s) 792, 957, 1044, 1115
Eam1105I GACNNNNNGTC 1 cut(s) 228
EarI CTCTTC 4 cut(s) 792, 957, 1044, 1115
Eco130I CCWWGG 1 cut(s) 1339
Eco24I GRGCYC 1 cut(s) 1127
Eco31I GGTCTC 1 cut(s) 215
Eco32I GATATC 1 cut(s) 1483
Eco47I GGWCC 2 cut(s) 484, 1314
Eco57I CTGAAG 3 cut(s) 281, 876, 1470
Eco81I CCTNAGG 1 cut(s) 528
Eco88I CYCGRG 1 cut(s) 74
Eco91I GGTNACC 1 cut(s) 1387
EcoO65I GGTNACC 1 cut(s) 1387
EcoRI GAATTC 3 cut(s) 245, 451, 838
EcoRII CCWGG 1 cut(s) 240
EcoRV GATATC 1 cut(s) 1483
EcoT14I CCWWGG 1 cut(s) 1339
EcoT38I GRGCYC 1 cut(s) 1127
ErhI CCWWGG 1 cut(s) 1339
FaeI CATG 2 cut(s) 668, 1397
FaiI YATR 5 cut(s) 623, 666, 702, 804, 1395
FalI AAGNNNNNCTT 2 cut(s) 1323, 1355
FaqI GGGAC 2 cut(s) 358, 1099
FatI CATG 2 cut(s) 664, 1393
FauI CCCGC 2 cut(s) 155, 738
FbaI TGATCA 2 cut(s) 391, 661
Fnu4HI GCNGC 5 cut(s) 864, 999, 1057, 1369, 1436
FokI GGATG 6 cut(s) 181, 551, 734, 797, 1361, 1502
FriOI GRGCYC 1 cut(s) 1127
Fsp4HI GCNGC 5 cut(s) 864, 999, 1057, 1369, 1436
FspBI CTAG 1 cut(s) 194
GlaI GCGC 1 cut(s) 1323
GluI GCNGC 5 cut(s) 864, 999, 1057, 1369, 1436
GsaI CCCAGC 3 cut(s) 1086, 1348, 1480
GsuI CTGGAG 1 cut(s) 224
HaeII RGCGCY 1 cut(s) 1325
HaeIII GGCC 1 cut(s) 350
HapII CCGG 4 cut(s) 50, 507, 1312, 1325
HgaI GACGC 3 cut(s) 298, 383, 512
HhaI GCGC 1 cut(s) 1324
Hin1I GRCGYC 1 cut(s) 504
Hin1II CATG 2 cut(s) 668, 1397
Hin6I GCGC 1 cut(s) 1322
HinP1I GCGC 1 cut(s) 1322
HpaII CCGG 4 cut(s) 50, 507, 1312, 1325
HphI GGTGA 9 cut(s) 188, 226, 512, 929, 958, 971, 1001, 1184, 1399
Hpy188III TCNNGA 6 cut(s) 50, 220, 233, 337, 665, 1280
Hpy99I CGWCG 1 cut(s) 234
HpyAV CCTTC 7 cut(s) 851, 892, 979, 1105, 1141, 1199, 1378
HpyCH4III ACNGT 7 cut(s) 230, 301, 334, 422, 462, 467, 518
HpyCH4IV ACGT 2 cut(s) 396, 477
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 4 cut(s) 159, 383, 842, 1435
HpySE526I ACGT 2 cut(s) 396, 477
Hsp92I GRCGYC 1 cut(s) 504
Hsp92II CATG 2 cut(s) 668, 1397
HspAI GCGC 1 cut(s) 1322
Kpn2I TCCGGA 1 cut(s) 49
Ksp22I TGATCA 2 cut(s) 391, 661
LguI GCTCTTC 1 cut(s) 1115
LmnI GCTCC 2 cut(s) 306, 617
Lsp1109I GCAGC 2 cut(s) 850, 1068
LweI GCATC 2 cut(s) 94, 1282
MaeI CTAG 1 cut(s) 194
MaeII ACGT 2 cut(s) 396, 477
MaeIII GTNAC 2 cut(s) 500, 1387
MflI RGATCY 2 cut(s) 37, 1360
MhlI GDGCHC 1 cut(s) 1127
MluCI AATT 8 cut(s) 4, 245, 451, 542, 591, 750, 773, 838
MlyI GAGTC 3 cut(s) 86, 218, 1205
MmeI TCCRAC 2 cut(s) 273, 1378
MroI TCCGGA 1 cut(s) 49
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 546, 741
MspI CCGG 4 cut(s) 50, 507, 1312, 1325
MspR9I CCNGG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 242
MvnI CGCG 2 cut(s) 234, 377
MwoI GCNNNNNNNGC 4 cut(s) 159, 383, 842, 1435
NlaIII CATG 2 cut(s) 668, 1397
NlaIV GGNNCC 1 cut(s) 525
NmuCI GTSAC 2 cut(s) 500, 1387
NruI TCGCGA 1 cut(s) 234
NspV TTCGAA 2 cut(s) 113, 455
PagI TCATGA 1 cut(s) 664
PciSI GCTCTTC 1 cut(s) 1115
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 9 cut(s) 53, 59, 65, 110, 404, 493, 1025, 1070, 1283
PfoI TCCNGGA 1 cut(s) 240
PinAI ACCGGT 1 cut(s) 1311
PkrI GCNGC 5 cut(s) 865, 1000, 1058, 1370, 1437
PleI GAGTC 3 cut(s) 85, 217, 1205
PpsI GAGTC 3 cut(s) 85, 217, 1205
Ppu21I YACGTR 1 cut(s) 397
PsiI TTATAA 1 cut(s) 702
Psp6I CCWGG 1 cut(s) 240
PspEI GGTNACC 1 cut(s) 1387
PspFI CCCAGC 3 cut(s) 1082, 1344, 1476
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 525
PspPI GGNCC 3 cut(s) 349, 484, 1314
PsuI RGATCY 2 cut(s) 37, 1360
RruI TCGCGA 1 cut(s) 234
RsaI GTAC 3 cut(s) 370, 464, 686
RsaNI GTAC 3 cut(s) 369, 463, 685
SapI GCTCTTC 1 cut(s) 1115
SaqAI TTAA 2 cut(s) 546, 741
SatI GCNGC 5 cut(s) 864, 999, 1057, 1369, 1436
Sau96I GGNCC 3 cut(s) 349, 484, 1314
SchI GAGTC 3 cut(s) 86, 218, 1205
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 1127
SfaNI GCATC 2 cut(s) 94, 1282
SfuI TTCGAA 2 cut(s) 113, 455
SinI GGWCC 2 cut(s) 484, 1314
SmlI CTYRAG 3 cut(s) 363, 1074, 1471
SmoI CTYRAG 3 cut(s) 363, 1074, 1471
Sse9I AATT 8 cut(s) 4, 245, 451, 542, 591, 750, 773, 838
SsiI CCGC 6 cut(s) 162, 745, 998, 1368, 1429, 1435
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 240
StyI CCWWGG 1 cut(s) 1339
TaaI ACNGT 7 cut(s) 230, 301, 334, 422, 462, 467, 518
TaiI ACGT 2 cut(s) 399, 480
TaqI TCGA 9 cut(s) 113, 219, 273, 455, 755, 830, 980, 1235, 1485
TasI AATT 8 cut(s) 4, 245, 451, 542, 591, 750, 773, 838
TauI GCSGC 3 cut(s) 1001, 1371, 1438
TfiI GAWTC 9 cut(s) 53, 59, 65, 110, 404, 493, 1025, 1070, 1283
Tru1I TTAA 2 cut(s) 546, 741
Tru9I TTAA 2 cut(s) 546, 741
TscAI CASTG 3 cut(s) 958, 1102, 1450
TseFI GTSAC 2 cut(s) 500, 1387
TseI GCWGC 2 cut(s) 863, 1056
Tsp45I GTSAC 2 cut(s) 500, 1387
TspGWI ACGGA 3 cut(s) 7, 386, 476
TspRI CASTG 3 cut(s) 958, 1102, 1450
VpaK11BI GGWCC 2 cut(s) 484, 1314
XapI RAATTY 5 cut(s) 4, 245, 451, 542, 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 1400
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.