Rh6BG342700

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013426
Physical Location & Seq
Reverse (-)
57487875 .. 57489365
1491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG342700.1

Sequence Viewer

Length: 1491 bp
ATGAATTTCTTCAAGTCCGTATTCGCAGACGAGCCCGATCCGTCAAACCCCGAATCCGAATCGGGGCCCACCAGTAACCAAGATCCAGATCCGAAGCCCCAACCCGATCCCAACCCAGCCGGCATTGGCGGGTGGAACTTGGGCGATCTGATCAAAACCATCGCCACCAAGTCCGAGACCGTCATCGAGACGTACCGCCGCGACTTGCAGGAATTCGGGTCGGGTCTGAAGAAAGAGATCGAGGTCGCCCAGGGGTCGCTGGAGACAGTCGGCACCAGAATCGATGAGTTGGGCAACACAGTCCTCGCAGGAACGGCCCAGATCATCTCCCAGGGCATCCTCGCCCCCGATCACGAATCCGATTCGTCCGATTCCAACAACACCTCGACCCCCCAGCGAAGGAGCTTGAATTCCAACAAGTACAGTAGGTTCGAGTCTCAGGTCCGCGCGATTCAGGGTGACGTCAGCACCTACTGTGACGAGCCTGAGGATTTGGAGGAGTATAGGAAGTGGAAATCGGGGTTTGTGTTGGAGGAGAAGAGGGAGGAGATTGAGGGTTTGCTTGAGGGGAATGGAGCAATGGAGAGTATTTACAACAAGGTCGCGCCGAATGTGGTTGATGATGAGACGTTTTGGAGCAGGTATTATTTTAGGGTGTATAAGCTCAAGCAAGCTGAGGATGTTAGGGCGAATCTGGTGAAGAGGGCGATTTCGGTTGAATTGGAGGAGGAGTTGAGTTGGGATGTTGATGATGATGAGTATGATGAAAGTGATGGCAATGTGGTTGCGAAATCGAGTTTAGGGAAGAGTAGTGAAGTTGGTGGTGGAGTTGTGAAGGAGAAGGAGTTGAAGAGTGATGATCAGGTTGGAGATAAGGGTTCCTCAAAGGTGGGAGAGGTGAGCAGTGATGTGGCAGCGAAAACAGAGTCGGTTAGCAAAGATTTGGAGCAAAAGATTGTCAAGGAAGAGAGTTCCGGTGAGAAATTGCAAAGTGGGACTTCGGAGGTTGTTGAAGAGAAGGAAGGGAAGAGTCTGAAAGTCGATAATGAGAAGAAAGAAAGTGCTGTGGAGTCTAGTGGTGATAAGGAGTCGGAGAAGAAAGTGAATGAAGTAGGGGATTCTGGGATGCCATCAAAATCTGATGAGGAGAAGAAAGTGAATGTAGAAGGGGATTCTGGGAAGAAAGACTTGCCGCCATCAAAATCGGATGATAAAGCGGCTTTAGAGGTGAAGAATGAGGCTCCTGCATCTAGCAAAGAGAGTGGTGTATCGGCTCCTGCTTCAGTCCGGCCCTCAGTAGAACCTGAGGAAGAAGACCTTGGCTGGGATGAGATTGAGGATCTTAGCAGCATTGATGAAAAGAAAGCGAACCCTGGTGCAAGTGGTGGAAGTGCTAATAGAGCTGAGCTGCAGAAGCGGCTCAGCACTGCGGAAGAAGAAGAAGACTTGAGCTGGGATATAGATGATGATGATGAACCCGCCAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

496

Amino Acids

54.04

Weight (kDa)

4.4

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 171 - 227 5.3e-15 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013426)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03350
fragaria_vesca FvH4_2g24111
malus_domestica MD03G1271200.v1.1
prunus_persica Prupe.8G247300_v2.0.a1
pyrus_communis pycom03g21590 pycom11g25850
rosa_chinensis RchiOBHm_Chr6g0291911
rosa_laevigata RLG00000012079
rosa_multiflora Rmu_co8044656.1_g000001 Rmu_sc0016851.1_g000001 Rmu_sc0030145.1_g000001
rosa_roxburghii Rroxscaffold_7G00175630
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG335300 Rh6BG342700 Rh6CG348900 Rh6DG335600
rosa_wichuraiana Rw6G029180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 465
Acc36I ACCTGC 1 cut(s) 630
AccB1I GGYRCC 1 cut(s) 272
AccII CGCG 4 cut(s) 201, 447, 449, 605
AciI CCGC 9 cut(s) 129, 196, 199, 445, 1193, 1217, 1417, 1430, 1479
AclWI GGATC 5 cut(s) 32, 77, 83, 101, 1347
AcsI RAATTY 3 cut(s) 4, 212, 409
AcuI CTGAAG 2 cut(s) 248, 1266
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 2 cut(s) 194, 422
AfiI CCNNNNNNNGG 3 cut(s) 63, 399, 1324
AgsI TTSAA 5 cut(s) 13, 409, 719, 850, 1013
AjnI CCWGG 3 cut(s) 249, 330, 1372
AjuI GAANNNNNNNTTGG 2 cut(s) 1302, 1334
AluBI AGCT 7 cut(s) 405, 664, 674, 1403, 1408, 1452, 1487
AluI AGCT 7 cut(s) 405, 664, 674, 1403, 1408, 1452, 1487
Alw26I GTCTC 5 cut(s) 170, 182, 257, 441, 620
AlwI GGATC 5 cut(s) 32, 77, 83, 101, 1347
AoxI GGCC 3 cut(s) 65, 315, 1289
ApaI GGGCCC 1 cut(s) 69
ApeKI GCWGC 3 cut(s) 914, 1347, 1408
ApoI RAATTY 3 cut(s) 4, 212, 409
ArsI GACNNNNNNTTYG 2 cut(s) 911, 943
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 2 cut(s) 449, 607
AspS9I GGNCC 5 cut(s) 65, 66, 316, 442, 1290
AsuHPI GGTGA 6 cut(s) 470, 709, 910, 989, 1091, 1240
AvaII GGWCC 1 cut(s) 442
AxyI CCTNAGG 2 cut(s) 486, 1305
BaeGI GKGCMC 1 cut(s) 69
BanI GGYRCC 1 cut(s) 272
BanII GRGCYC 2 cut(s) 36, 69
BbsI GAAGAC 2 cut(s) 1320, 1449
BbvCI CCTCAGC 1 cut(s) 675
BbvI GCAGC 3 cut(s) 926, 1359, 1395
BccI CCATC 4 cut(s) 167, 767, 1138, 1204
BceAI ACGGC 1 cut(s) 330
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 3 cut(s) 251, 332, 1374
BclI TGATCA 2 cut(s) 150, 859
BcoDI GTCTC 5 cut(s) 170, 182, 257, 441, 620
BfaI CTAG 2 cut(s) 1074, 1251
BfmI CTRYAG 1 cut(s) 1409
BfuAI ACCTGC 1 cut(s) 630
BisI GCNGC 7 cut(s) 199, 915, 1193, 1218, 1348, 1409, 1418
BlpI GCTNAGC 2 cut(s) 1404, 1421
BlsI GCNGC 7 cut(s) 200, 916, 1194, 1219, 1349, 1410, 1419
Bme1390I CCNGG 3 cut(s) 251, 332, 1374
Bme18I GGWCC 1 cut(s) 442
BmgT120I GGNCC 5 cut(s) 65, 66, 316, 442, 1290
BmiI GGNNCC 6 cut(s) 66, 67, 274, 880, 1242, 1275
BmrFI CCNGG 3 cut(s) 251, 332, 1374
BmsI GCATC 3 cut(s) 345, 1116, 1256
BpiI GAAGAC 2 cut(s) 1320, 1449
BpmI CTGGAG 1 cut(s) 281
Bpu10I CCTNAGC 1 cut(s) 675
Bpu1102I GCTNAGC 2 cut(s) 1404, 1421
BpuEI CTTGAG 3 cut(s) 584, 650, 1468
Bsa29I ATCGAT 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 462
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 6 cut(s) 249, 250, 330, 331, 1318, 1372
BsaWI WCCGGW 1 cut(s) 974
BsaXI ACNNNNNCTCC 4 cut(s) 716, 746, 830, 860
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 399, 1324
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 72
Bse21I CCTNAGG 2 cut(s) 486, 1305
Bse3DI GCAATG 2 cut(s) 585, 784
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 3 cut(s) 251, 332, 1374
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 6 cut(s) 249, 250, 330, 331, 1318, 1372
BseGI GGATG 6 cut(s) 336, 685, 748, 1131, 1213, 1333
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 3 cut(s) 63, 399, 1324
BseMI GCAATG 2 cut(s) 585, 784
BseMII CTCAG 7 cut(s) 452, 477, 666, 1296, 1308, 1395, 1435
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 6 cut(s) 512, 548, 560, 740, 743, 1160
BseSI GKGCMC 1 cut(s) 69
BseXI GCAGC 3 cut(s) 926, 1359, 1395
BseYI CCCAGC 4 cut(s) 115, 393, 1323, 1452
Bsh1236I CGCG 4 cut(s) 201, 447, 449, 605
BshFI GGCC 3 cut(s) 67, 317, 1291
BshNI GGYRCC 1 cut(s) 272
BshVI ATCGAT 1 cut(s) 282
BsiSI CCGG 3 cut(s) 120, 975, 1288
BslFI GGGAC 1 cut(s) 1009
BslI CCNNNNNNNGG 3 cut(s) 63, 399, 1324
BsmAI GTCTC 5 cut(s) 170, 182, 257, 441, 620
BsmBI CGTCTC 2 cut(s) 182, 620
BsmFI GGGAC 1 cut(s) 1009
BsnI GGCC 3 cut(s) 67, 317, 1291
Bso31I GGTCTC 1 cut(s) 170
Bsp120I GGGCCC 1 cut(s) 65
Bsp1286I GDGCHC 2 cut(s) 36, 69
Bsp1720I GCTNAGC 2 cut(s) 1404, 1421
BspACI CCGC 9 cut(s) 129, 196, 199, 445, 1193, 1217, 1417, 1430, 1479
BspANI GGCC 3 cut(s) 67, 317, 1291
BspCNI CTCAG 7 cut(s) 451, 478, 667, 1297, 1307, 1396, 1434
BspDI ATCGAT 1 cut(s) 282
BspFNI CGCG 4 cut(s) 201, 447, 449, 605
BspLI GGNNCC 6 cut(s) 66, 67, 274, 880, 1242, 1275
BspMAI CTGCAG 1 cut(s) 1413
BspMI ACCTGC 1 cut(s) 630
BspPI GGATC 5 cut(s) 32, 77, 83, 101, 1347
BspT107I GGYRCC 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 170
BsrDI GCAATG 2 cut(s) 585, 784
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 6 cut(s) 249, 250, 330, 331, 1318, 1372
BssNI GRCGYC 1 cut(s) 462
BssT1I CCWWGG 1 cut(s) 1318
Bst2UI CCWGG 3 cut(s) 251, 332, 1374
Bst4CI ACNGT 5 cut(s) 181, 268, 301, 425, 476
Bst6I CTCTTC 7 cut(s) 533, 695, 800, 845, 960, 1008, 1022
BstACI GRCGYC 1 cut(s) 462
BstC8I GCNNGC 2 cut(s) 121, 672
BstDEI CTNAG 8 cut(s) 438, 486, 675, 1294, 1305, 1343, 1404, 1421
BstF5I GGATG 6 cut(s) 336, 685, 748, 1131, 1213, 1333
BstFNI CGCG 4 cut(s) 201, 447, 449, 605
BstHHI GCGC 2 cut(s) 449, 607
BstMAI GTCTC 5 cut(s) 170, 182, 257, 441, 620
BstMWI GCNNNNNNNGC 4 cut(s) 314, 1400, 1414, 1417
BstNI CCWGG 3 cut(s) 251, 332, 1374
BstSCI CCNGG 3 cut(s) 249, 330, 1372
BstSFI CTRYAG 1 cut(s) 1409
BstSLI GKGCMC 1 cut(s) 69
BstUI CGCG 4 cut(s) 201, 447, 449, 605
BstV1I GCAGC 3 cut(s) 926, 1359, 1395
BstV2I GAAGAC 2 cut(s) 1320, 1449
BstX2I RGATCY 3 cut(s) 82, 88, 1339
BstYI RGATCY 3 cut(s) 82, 88, 1339
Bsu15I ATCGAT 1 cut(s) 282
Bsu36I CCTNAGG 2 cut(s) 486, 1305
BsuRI GGCC 3 cut(s) 67, 317, 1291
BsuTUI ATCGAT 1 cut(s) 282
BtgZI GCGATG 1 cut(s) 145
BtsCI GGATG 6 cut(s) 336, 685, 748, 1131, 1213, 1333
BtsI GCAGTG 2 cut(s) 910, 1425
BtsIMutI CAGTG 2 cut(s) 910, 1425
BveI ACCTGC 1 cut(s) 630
Cac8I GCNNGC 2 cut(s) 121, 672
CfoI GCGC 2 cut(s) 449, 607
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 5 cut(s) 65, 66, 316, 442, 1290
ClaI ATCGAT 1 cut(s) 282
Csp6I GTAC 2 cut(s) 193, 421
CspCI CAANNNNNGTGG 2 cut(s) 1243, 1278
CviQI GTAC 2 cut(s) 193, 421
DdeI CTNAG 8 cut(s) 438, 486, 675, 1294, 1305, 1343, 1404, 1421
Eam1104I CTCTTC 7 cut(s) 533, 695, 800, 845, 960, 1008, 1022
EarI CTCTTC 7 cut(s) 533, 695, 800, 845, 960, 1008, 1022
Eco130I CCWWGG 1 cut(s) 1318
Eco24I GRGCYC 2 cut(s) 36, 69
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 442
Eco57I CTGAAG 2 cut(s) 248, 1266
Eco81I CCTNAGG 2 cut(s) 486, 1305
EcoO109I RGGNCCY 1 cut(s) 65
EcoRI GAATTC 2 cut(s) 212, 409
EcoRII CCWGG 3 cut(s) 249, 330, 1372
EcoT14I CCWWGG 1 cut(s) 1318
EcoT38I GRGCYC 2 cut(s) 36, 69
ErhI CCWWGG 1 cut(s) 1318
Esp3I CGTCTC 2 cut(s) 182, 620
FaiI YATR 4 cut(s) 504, 660, 762, 1460
FalI AAGNNNNNCTT 6 cut(s) 982, 1014, 1172, 1204, 1302, 1334
FaqI GGGAC 1 cut(s) 1009
FauI CCCGC 2 cut(s) 122, 1486
FbaI TGATCA 2 cut(s) 150, 859
Fnu4HI GCNGC 7 cut(s) 199, 915, 1193, 1218, 1348, 1409, 1418
FokI GGATG 6 cut(s) 323, 692, 755, 1138, 1220, 1340
FriOI GRGCYC 2 cut(s) 36, 69
Fsp4HI GCNGC 7 cut(s) 199, 915, 1193, 1218, 1348, 1409, 1418
FspBI CTAG 2 cut(s) 1074, 1251
GlaI GCGC 2 cut(s) 448, 606
GluI GCNGC 7 cut(s) 199, 915, 1193, 1218, 1348, 1409, 1418
GsaI CCCAGC 4 cut(s) 119, 397, 1327, 1456
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 3 cut(s) 67, 317, 1291
HapII CCGG 3 cut(s) 120, 975, 1288
HhaI GCGC 2 cut(s) 449, 607
Hin1I GRCGYC 1 cut(s) 462
Hin6I GCGC 2 cut(s) 447, 605
HinP1I GCGC 2 cut(s) 447, 605
HindIII AAGCTT 1 cut(s) 1485
HpaII CCGG 3 cut(s) 120, 975, 1288
HphI GGTGA 6 cut(s) 470, 709, 910, 989, 1091, 1240
Hpy188III TCNNGA 3 cut(s) 86, 187, 353
HpyAV CCTTC 6 cut(s) 393, 829, 835, 1012, 1016, 1160
HpyCH4III ACNGT 5 cut(s) 181, 268, 301, 425, 476
HpyCH4IV ACGT 3 cut(s) 191, 462, 629
HpyCH4V TGCA 5 cut(s) 208, 988, 1247, 1379, 1411
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 1400, 1414, 1417
HpyF3I CTNAG 8 cut(s) 438, 486, 675, 1294, 1305, 1343, 1404, 1421
HpySE526I ACGT 3 cut(s) 191, 462, 629
Hsp92I GRCGYC 1 cut(s) 462
HspAI GCGC 2 cut(s) 447, 605
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Ksp22I TGATCA 2 cut(s) 150, 859
LmnI GCTCC 6 cut(s) 402, 575, 636, 946, 1246, 1279
Lsp1109I GCAGC 3 cut(s) 926, 1359, 1395
LweI GCATC 3 cut(s) 345, 1116, 1256
MaeI CTAG 2 cut(s) 1074, 1251
MaeII ACGT 3 cut(s) 191, 462, 629
MaeIII GTNAC 3 cut(s) 74, 458, 476
MflI RGATCY 3 cut(s) 82, 88, 1339
MhlI GDGCHC 2 cut(s) 36, 69
MluCI AATT 5 cut(s) 4, 212, 409, 719, 983
MlyI GAGTC 5 cut(s) 443, 935, 1039, 1079, 1097
MmeI TCCRAC 5 cut(s) 399, 438, 510, 847, 1071
MroNI GCCGGC 1 cut(s) 119
MroXI GAANNNNTTC 1 cut(s) 8
MspI CCGG 3 cut(s) 120, 975, 1288
MspR9I CCNGG 3 cut(s) 251, 332, 1374
MvaI CCWGG 3 cut(s) 251, 332, 1374
MvnI CGCG 4 cut(s) 201, 447, 449, 605
MwoI GCNNNNNNNGC 4 cut(s) 314, 1400, 1414, 1417
NaeI GCCGGC 1 cut(s) 121
NgoMIV GCCGGC 1 cut(s) 119
NlaIV GGNNCC 6 cut(s) 66, 67, 274, 880, 1242, 1275
NmuCI GTSAC 2 cut(s) 458, 476
PasI CCCWGGG 2 cut(s) 250, 331
PdiI GCCGGC 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 7 cut(s) 200, 916, 1194, 1219, 1349, 1410, 1419
PleI GAGTC 5 cut(s) 442, 934, 1038, 1078, 1096
PpsI GAGTC 5 cut(s) 442, 934, 1038, 1078, 1096
Psp6I CCWGG 3 cut(s) 249, 330, 1372
PspFI CCCAGC 4 cut(s) 115, 393, 1323, 1452
PspGI CCWGG 3 cut(s) 249, 330, 1372
PspN4I GGNNCC 6 cut(s) 66, 67, 274, 880, 1242, 1275
PspOMI GGGCCC 1 cut(s) 65
PspPI GGNCC 5 cut(s) 65, 66, 316, 442, 1290
PsrI GAACNNNNNNTAC 2 cut(s) 413, 445
PstI CTGCAG 1 cut(s) 1413
PsuI RGATCY 3 cut(s) 82, 88, 1339
RsaI GTAC 2 cut(s) 194, 422
RsaNI GTAC 2 cut(s) 193, 421
SatI GCNGC 7 cut(s) 199, 915, 1193, 1218, 1348, 1409, 1418
Sau96I GGNCC 5 cut(s) 65, 66, 316, 442, 1290
SchI GAGTC 5 cut(s) 443, 935, 1039, 1079, 1097
ScrFI CCNGG 3 cut(s) 251, 332, 1374
SduI GDGCHC 2 cut(s) 36, 69
SfaNI GCATC 3 cut(s) 345, 1116, 1256
SfcI CTRYAG 1 cut(s) 1409
SinI GGWCC 1 cut(s) 442
SmlI CTYRAG 3 cut(s) 563, 665, 1447
SmoI CTYRAG 3 cut(s) 563, 665, 1447
Sse9I AATT 5 cut(s) 4, 212, 409, 719, 983
SsiI CCGC 9 cut(s) 129, 196, 199, 445, 1193, 1217, 1417, 1430, 1479
SspMI CTAG 2 cut(s) 1074, 1251
StyD4I CCNGG 3 cut(s) 249, 330, 1372
StyI CCWWGG 1 cut(s) 1318
TaaI ACNGT 5 cut(s) 181, 268, 301, 425, 476
TaiI ACGT 3 cut(s) 194, 465, 632
TaqI TCGA 7 cut(s) 186, 240, 282, 386, 432, 794, 1041
TasI AATT 5 cut(s) 4, 212, 409, 719, 983
TatI WGTACW 1 cut(s) 420
TauI GCSGC 4 cut(s) 201, 1195, 1220, 1420
TscAI CASTG 2 cut(s) 910, 1432
TseFI GTSAC 2 cut(s) 458, 476
TseI GCWGC 3 cut(s) 914, 1347, 1408
Tsp45I GTSAC 2 cut(s) 458, 476
TspDTI ATGAA 5 cut(s) 17, 780, 1122, 1371, 1488
TspGWI ACGGA 2 cut(s) 7, 30
TspRI CASTG 2 cut(s) 910, 1432
VpaK11BI GGWCC 1 cut(s) 442
XapI RAATTY 3 cut(s) 4, 212, 409
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 1074, 1251
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.