Rmu_co8044656.1_g000001

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8044656.1
OG0013426
Physical Location & Seq
Reverse (-)
2 .. 442
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8044656.1_g000001.1.cds

Sequence Viewer

Length: 441 bp
atgaatttcttcaagtccgtattcgcagacgagcccgatccgtcaaaccccgaatccgactccgaatccgaatcggggccccccagtaaccaagatccagatacgaagccccagcctacccaacccgaccccaacccggccggcattggcgggtggaacttcggcgatctgatcaaaaccatcgccaccaagtccgagaccgtcatcgagacctaccgccgcgacttgcaggaattcgggtcgggtctgaagaaagagatcgaggtcgcccaggggtcgctggagacagtcggcaccagaatcgatgagttgggcaacacagtcctcgcaggaacggcccagatcatctcccagggcatcctcgcccccgatcacgaatccgattcgtccgattccaacaacacctcgaccccccagcggagcttgaattccaacaagtac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

147

Amino Acids

15.8

Weight (kDa)

4.26

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013426)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03350
fragaria_vesca FvH4_2g24111
malus_domestica MD03G1271200.v1.1
prunus_persica Prupe.8G247300_v2.0.a1
pyrus_communis pycom03g21590 pycom11g25850
rosa_chinensis RchiOBHm_Chr6g0291911
rosa_laevigata RLG00000012079
rosa_multiflora Rmu_co8044656.1_g000001 Rmu_sc0016851.1_g000001 Rmu_sc0030145.1_g000001
rosa_roxburghii Rroxscaffold_7G00175630
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG335300 Rh6BG342700 Rh6CG348900 Rh6DG335600
rosa_wichuraiana Rw6G029180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 293
AccII CGCG 1 cut(s) 222
AciI CCGC 4 cut(s) 150, 217, 220, 418
AclWI GGATC 2 cut(s) 32, 89
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 3 cut(s) 4, 233, 427
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 3 cut(s) 75, 136, 417
AgsI TTSAA 2 cut(s) 13, 427
AjnI CCWGG 2 cut(s) 270, 351
AluBI AGCT 1 cut(s) 423
AluI AGCT 1 cut(s) 423
Alw26I GTCTC 3 cut(s) 191, 203, 278
AlwI GGATC 2 cut(s) 32, 89
AoxI GGCC 3 cut(s) 77, 138, 336
ApaI GGGCCC 1 cut(s) 81
ApoI RAATTY 3 cut(s) 4, 233, 427
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 3 cut(s) 77, 78, 337
AsuC2I CCSGG 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 81
BanI GGYRCC 1 cut(s) 293
BanII GRGCYC 2 cut(s) 36, 81
BccI CCATC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 351
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 2 cut(s) 272, 353
BclI TGATCA 1 cut(s) 171
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 3 cut(s) 191, 203, 278
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
Bme1390I CCNGG 3 cut(s) 137, 272, 353
BmgT120I GGNCC 3 cut(s) 77, 78, 337
BmiI GGNNCC 4 cut(s) 78, 79, 80, 295
BmrFI CCNGG 3 cut(s) 137, 272, 353
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 366
BmuI ACTGGG 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 137
Bsa29I ATCGAT 1 cut(s) 303
BsaI GGTCTC 2 cut(s) 191, 203
BsaJI CCNNGG 4 cut(s) 270, 271, 351, 352
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 136, 417
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 84
BseBI CCWGG 2 cut(s) 272, 353
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 4 cut(s) 270, 271, 351, 352
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 3 cut(s) 75, 136, 417
BseNI ACTGG 1 cut(s) 84
BseSI GKGCMC 1 cut(s) 81
BseX3I CGGCCG 1 cut(s) 138
BseYI CCCAGC 2 cut(s) 111, 414
Bsh1236I CGCG 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 3 cut(s) 79, 140, 338
BshNI GGYRCC 1 cut(s) 293
BshVI ATCGAT 1 cut(s) 303
BsiEI CGRYCG 1 cut(s) 141
BsiSI CCGG 2 cut(s) 137, 141
BslI CCNNNNNNNGG 3 cut(s) 75, 136, 417
BsmAI GTCTC 3 cut(s) 191, 203, 278
BsnI GGCC 3 cut(s) 79, 140, 338
Bso31I GGTCTC 2 cut(s) 191, 203
Bsp120I GGGCCC 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 36, 81
Bsp143I GATC 7 cut(s) 37, 94, 166, 171, 258, 342, 370
BspACI CCGC 4 cut(s) 150, 217, 220, 418
BspANI GGCC 3 cut(s) 79, 140, 338
BspDI ATCGAT 1 cut(s) 303
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 4 cut(s) 78, 79, 80, 295
BspPI GGATC 2 cut(s) 32, 89
BspT107I GGYRCC 1 cut(s) 293
BspTNI GGTCTC 2 cut(s) 191, 203
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 84
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 4 cut(s) 270, 271, 351, 352
BssMI GATC 7 cut(s) 37, 94, 166, 171, 258, 342, 370
Bst2UI CCWGG 2 cut(s) 272, 353
Bst4CI ACNGT 3 cut(s) 202, 289, 322
BstC8I GCNNGC 1 cut(s) 142
BstF5I GGATG 1 cut(s) 357
BstFNI CGCG 1 cut(s) 222
BstKTI GATC 7 cut(s) 40, 97, 169, 174, 261, 345, 373
BstMAI GTCTC 3 cut(s) 191, 203, 278
BstMBI GATC 7 cut(s) 37, 94, 166, 171, 258, 342, 370
BstMCI CGRYCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNI CCWGG 2 cut(s) 272, 353
BstSCI CCNGG 3 cut(s) 135, 270, 351
BstSLI GKGCMC 1 cut(s) 81
BstUI CGCG 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BstZI CGGCCG 1 cut(s) 138
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 3 cut(s) 79, 140, 338
BsuTUI ATCGAT 1 cut(s) 303
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 3 cut(s) 77, 78, 337
ClaI ATCGAT 1 cut(s) 303
Csp6I GTAC 1 cut(s) 439
CviJI RGCY 7 cut(s) 34, 79, 109, 115, 140, 338, 423
CviKI_1 RGCY 7 cut(s) 34, 79, 109, 115, 140, 338, 423
CviQI GTAC 1 cut(s) 439
DpnI GATC 7 cut(s) 39, 96, 168, 173, 260, 344, 372
DpnII GATC 7 cut(s) 37, 94, 166, 171, 258, 342, 370
EaeI YGGCCR 1 cut(s) 138
EagI CGGCCG 1 cut(s) 138
EclXI CGGCCG 1 cut(s) 138
Eco24I GRGCYC 2 cut(s) 36, 81
Eco31I GGTCTC 2 cut(s) 191, 203
Eco52I CGGCCG 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 269
EcoO109I RGGNCCY 2 cut(s) 77, 78
EcoRI GAATTC 2 cut(s) 233, 427
EcoRII CCWGG 2 cut(s) 270, 351
EcoT38I GRGCYC 2 cut(s) 36, 81
FauI CCCGC 1 cut(s) 143
FbaI TGATCA 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 2 cut(s) 36, 81
Fsp4HI GCNGC 1 cut(s) 220
GluI GCNGC 1 cut(s) 220
GsaI CCCAGC 2 cut(s) 115, 418
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 3 cut(s) 79, 140, 338
HapII CCGG 2 cut(s) 137, 141
HinfI GANTC 8 cut(s) 53, 59, 65, 71, 300, 377, 383, 392
HpaII CCGG 2 cut(s) 137, 141
Hpy188I TCNGA 8 cut(s) 58, 64, 70, 171, 196, 249, 382, 391
Hpy188III TCNNGA 3 cut(s) 98, 208, 374
HpyCH4III ACNGT 3 cut(s) 202, 289, 322
HpyCH4V TGCA 1 cut(s) 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 7 cut(s) 37, 94, 166, 171, 258, 342, 370
LmnI GCTCC 1 cut(s) 420
LweI GCATC 1 cut(s) 366
MaeIII GTNAC 1 cut(s) 86
MalI GATC 7 cut(s) 39, 96, 168, 173, 260, 344, 372
MboI GATC 7 cut(s) 37, 94, 166, 171, 258, 342, 370
MboII GAAGA 1 cut(s) 262
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 2 cut(s) 36, 81
MluCI AATT 3 cut(s) 4, 233, 427
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 2 cut(s) 81, 420
MnlI CCTC 4 cut(s) 256, 335, 371, 415
MroNI GCCGGC 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 418
MspI CCGG 2 cut(s) 137, 141
MspR9I CCNGG 3 cut(s) 137, 272, 353
MvaI CCWGG 2 cut(s) 272, 353
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 335
NaeI GCCGGC 1 cut(s) 142
NciI CCSGG 1 cut(s) 137
NdeII GATC 7 cut(s) 37, 94, 166, 171, 258, 342, 370
NgoMIV GCCGGC 1 cut(s) 140
NlaIV GGNNCC 4 cut(s) 78, 79, 80, 295
PasI CCCWGGG 2 cut(s) 271, 352
PdiI GCCGGC 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 7 cut(s) 53, 65, 71, 300, 377, 383, 392
PkrI GCNGC 1 cut(s) 221
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 270, 351
PspFI CCCAGC 2 cut(s) 111, 414
PspGI CCWGG 2 cut(s) 270, 351
PspN4I GGNNCC 4 cut(s) 78, 79, 80, 295
PspOMI GGGCCC 1 cut(s) 77
PspPI GGNCC 3 cut(s) 77, 78, 337
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 7 cut(s) 37, 94, 166, 171, 258, 342, 370
Sau96I GGNCC 3 cut(s) 77, 78, 337
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 3 cut(s) 137, 272, 353
SduI GDGCHC 2 cut(s) 36, 81
SetI ASST 4 cut(s) 215, 267, 407, 425
SfaNI GCATC 1 cut(s) 366
Sse9I AATT 3 cut(s) 4, 233, 427
SsiI CCGC 4 cut(s) 150, 217, 220, 418
StyD4I CCNGG 3 cut(s) 135, 270, 351
TaaI ACNGT 3 cut(s) 202, 289, 322
TaqI TCGA 4 cut(s) 207, 261, 303, 407
TasI AATT 3 cut(s) 4, 233, 427
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 7 cut(s) 53, 65, 71, 300, 377, 383, 392
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 7, 30
XapI RAATTY 3 cut(s) 4, 233, 427
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.