Rmu_sc0016851.1_g000001

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016851.1
OG0013426
Physical Location & Seq
Forward (+)
1 .. 685
685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016851.1_g000001.1.cds

Sequence Viewer

Length: 685 bp
tcgcccccgatcacgaatccgattcgtccgattccaacaacacctcgaccccccagcggagcttgaattccaacaagtacaataggttcgagtctcaggtgcgcgcgattcagggtgacgtcagcacctactgtgaggagcctgaggatttggaggagtatgggcagtggagatcggggtttgtgttggaggagaagagggaggagattgagggtttgcttgaggggaatggagcaatggagagtatttacaacaaggttgcaccgaatgtggttgatgatgagactttttggagcaggtattattatagggtgtataagctcaagcaagctgaggatgttagggcgaacctagtgaagagggcgatttcggttgaattggaggaggagttgagttgggatgttgatgatgatgagtatgatgaaagtgagggcaatgtggttgcgaaatccagtttagggaagagtagtgaagttggtggtggagttgtgaaggagaaggagttgaagagtgatgatcaggttggagataagggttcctcaaaggtgggagaggtgagcggtgttgctgaagaggctagtgtggcagcgaaaacagagtcgggtagcaaagattcggagcaaaaggttgtcgaggaagagagttctggtgagaaattgcaaagtgggactttggaggttgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

227

Amino Acids

25.1

Weight (kDa)

4.34

Isoelectric Point (pI)

53.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013426)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03350
fragaria_vesca FvH4_2g24111
malus_domestica MD03G1271200.v1.1
prunus_persica Prupe.8G247300_v2.0.a1
pyrus_communis pycom03g21590 pycom11g25850
rosa_chinensis RchiOBHm_Chr6g0291911
rosa_laevigata RLG00000012079
rosa_multiflora Rmu_co8044656.1_g000001 Rmu_sc0016851.1_g000001 Rmu_sc0030145.1_g000001
rosa_roxburghii Rroxscaffold_7G00175630
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG335300 Rh6BG342700 Rh6CG348900 Rh6DG335600
rosa_wichuraiana Rw6G029180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 122
Acc36I ACCTGC 1 cut(s) 287
AccBSI CCGCTC 1 cut(s) 560
AccII CGCG 2 cut(s) 104, 106
AciI CCGC 2 cut(s) 57, 560
AcsI RAATTY 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 590
AcyI GRCGYC 1 cut(s) 119
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 2 cut(s) 56, 458
AgsI TTSAA 3 cut(s) 66, 376, 507
AluBI AGCT 3 cut(s) 62, 321, 331
AluI AGCT 3 cut(s) 62, 321, 331
Alw26I GTCTC 2 cut(s) 98, 277
ApeKI GCWGC 1 cut(s) 586
ApoI RAATTY 1 cut(s) 66
ArsI GACNNNNNNTTYG 2 cut(s) 583, 615
AspLEI GCGC 2 cut(s) 104, 106
AsuHPI GGTGA 3 cut(s) 127, 567, 661
AxyI CCTNAGG 1 cut(s) 143
BbvCI CCTCAGC 1 cut(s) 332
BbvI GCAGC 1 cut(s) 598
BclI TGATCA 1 cut(s) 516
BcoDI GTCTC 2 cut(s) 98, 277
BfaI CTAG 2 cut(s) 352, 578
BfuAI ACCTGC 1 cut(s) 287
BisI GCNGC 1 cut(s) 587
BlsI GCNGC 1 cut(s) 588
BmiI GGNNCC 2 cut(s) 140, 537
Bpu10I CCTNAGC 1 cut(s) 332
BpuEI CTTGAG 2 cut(s) 241, 307
BsaHI GRCGYC 1 cut(s) 119
BsaXI ACNNNNNCTCC 4 cut(s) 373, 403, 487, 517
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 458
Bse1I ACTGG 1 cut(s) 452
Bse21I CCTNAGG 1 cut(s) 143
Bse3DI GCAATG 2 cut(s) 242, 441
BseGI GGATG 2 cut(s) 342, 405
BseLI CCNNNNNNNGG 2 cut(s) 56, 458
BseMI GCAATG 2 cut(s) 242, 441
BseMII CTCAG 3 cut(s) 109, 134, 323
BseNI ACTGG 1 cut(s) 452
BsePI GCGCGC 1 cut(s) 102
BseRI GAGGAG 6 cut(s) 151, 169, 205, 217, 397, 400
BseXI GCAGC 1 cut(s) 598
BseYI CCCAGC 1 cut(s) 53
Bsh1236I CGCG 2 cut(s) 104, 106
BslFI GGGAC 1 cut(s) 681
BslI CCNNNNNNNGG 2 cut(s) 56, 458
BsmAI GTCTC 2 cut(s) 98, 277
BsmFI GGGAC 1 cut(s) 681
Bsp143I GATC 3 cut(s) 9, 172, 516
BspACI CCGC 2 cut(s) 57, 560
BspCNI CTCAG 3 cut(s) 108, 135, 324
BspFNI CGCG 2 cut(s) 104, 106
BspLI GGNNCC 2 cut(s) 140, 537
BspMI ACCTGC 1 cut(s) 287
BsrBI CCGCTC 1 cut(s) 560
BsrDI GCAATG 2 cut(s) 242, 441
BsrI ACTGG 1 cut(s) 452
BssHII GCGCGC 1 cut(s) 102
BssMI GATC 3 cut(s) 9, 172, 516
BssNI GRCGYC 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 6 cut(s) 190, 352, 457, 502, 566, 632
BstACI GRCGYC 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 104, 329
BstDEI CTNAG 3 cut(s) 95, 143, 332
BstF5I GGATG 2 cut(s) 342, 405
BstFNI CGCG 2 cut(s) 104, 106
BstHHI GCGC 2 cut(s) 104, 106
BstKTI GATC 3 cut(s) 12, 175, 519
BstMAI GTCTC 2 cut(s) 98, 277
BstMBI GATC 3 cut(s) 9, 172, 516
BstMWI GCNNNNNNNGC 2 cut(s) 574, 583
BstUI CGCG 2 cut(s) 104, 106
BstV1I GCAGC 1 cut(s) 598
Bsu36I CCTNAGG 1 cut(s) 143
BtsCI GGATG 2 cut(s) 342, 405
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
BveI ACCTGC 1 cut(s) 287
Cac8I GCNNGC 2 cut(s) 104, 329
CfoI GCGC 2 cut(s) 104, 106
Csp6I GTAC 1 cut(s) 78
CviJI RGCY 5 cut(s) 62, 141, 321, 331, 577
CviKI_1 RGCY 5 cut(s) 62, 141, 321, 331, 577
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 3 cut(s) 95, 143, 332
DpnI GATC 3 cut(s) 11, 174, 518
DpnII GATC 3 cut(s) 9, 172, 516
Eam1104I CTCTTC 6 cut(s) 190, 352, 457, 502, 566, 632
EarI CTCTTC 6 cut(s) 190, 352, 457, 502, 566, 632
Eco57I CTGAAG 1 cut(s) 590
Eco81I CCTNAGG 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 66
FaiI YATR 4 cut(s) 161, 308, 317, 419
FalI AAGNNNNNCTT 1 cut(s) 654
FaqI GGGAC 1 cut(s) 681
FbaI TGATCA 1 cut(s) 516
Fnu4HI GCNGC 1 cut(s) 587
FokI GGATG 2 cut(s) 349, 412
Fsp4HI GCNGC 1 cut(s) 587
FspBI CTAG 2 cut(s) 352, 578
GlaI GCGC 2 cut(s) 103, 105
GluI GCNGC 1 cut(s) 587
GsaI CCCAGC 1 cut(s) 57
HhaI GCGC 2 cut(s) 104, 106
Hin1I GRCGYC 1 cut(s) 119
Hin6I GCGC 2 cut(s) 102, 104
HinP1I GCGC 2 cut(s) 102, 104
HinfI GANTC 7 cut(s) 16, 22, 31, 91, 108, 598, 613
HphI GGTGA 3 cut(s) 127, 567, 661
Hpy188I TCNGA 3 cut(s) 21, 30, 618
Hpy188III TCNNGA 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 486, 492
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 2 cut(s) 262, 660
HpyF10VI GCNNNNNNNGC 2 cut(s) 574, 583
HpyF3I CTNAG 3 cut(s) 95, 143, 332
HpySE526I ACGT 1 cut(s) 119
Hsp92I GRCGYC 1 cut(s) 119
HspAI GCGC 2 cut(s) 102, 104
Ksp22I TGATCA 1 cut(s) 516
Kzo9I GATC 3 cut(s) 9, 172, 516
LmnI GCTCC 5 cut(s) 59, 138, 232, 293, 618
LpnPI CCDG 8 cut(s) 67, 82, 97, 155, 282, 465, 505, 632
Lsp1109I GCAGC 1 cut(s) 598
MaeI CTAG 2 cut(s) 352, 578
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 115
MalI GATC 3 cut(s) 11, 174, 518
MbiI CCGCTC 1 cut(s) 560
MboI GATC 3 cut(s) 9, 172, 516
MboII GAAGA 6 cut(s) 207, 369, 474, 519, 583, 649
MluCI AATT 3 cut(s) 66, 376, 655
MlyI GAGTC 2 cut(s) 100, 607
MmeI TCCRAC 4 cut(s) 59, 95, 167, 504
MspA1I CMGCKG 1 cut(s) 57
MvnI CGCG 2 cut(s) 104, 106
MwoI GCNNNNNNNGC 2 cut(s) 574, 583
NdeII GATC 3 cut(s) 9, 172, 516
NlaIV GGNNCC 2 cut(s) 140, 537
NmuCI GTSAC 1 cut(s) 115
PauI GCGCGC 1 cut(s) 102
PfeI GAWTC 5 cut(s) 16, 22, 31, 108, 613
PkrI GCNGC 1 cut(s) 588
PleI GAGTC 2 cut(s) 99, 606
PpsI GAGTC 2 cut(s) 99, 606
PspFI CCCAGC 1 cut(s) 53
PspN4I GGNNCC 2 cut(s) 140, 537
PsrI GAACNNNNNNTAC 2 cut(s) 70, 102
PteI GCGCGC 1 cut(s) 102
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SatI GCNGC 1 cut(s) 587
Sau3AI GATC 3 cut(s) 9, 172, 516
SchI GAGTC 2 cut(s) 100, 607
SmlI CTYRAG 2 cut(s) 220, 322
SmoI CTYRAG 2 cut(s) 220, 322
Sse9I AATT 3 cut(s) 66, 376, 655
SsiI CCGC 2 cut(s) 57, 560
SspMI CTAG 2 cut(s) 352, 578
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 1 cut(s) 122
TaqI TCGA 3 cut(s) 46, 89, 632
TasI AATT 3 cut(s) 66, 376, 655
TatI WGTACW 1 cut(s) 77
TfiI GAWTC 5 cut(s) 16, 22, 31, 108, 613
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 586
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 437
TspRI CASTG 1 cut(s) 172
XapI RAATTY 1 cut(s) 66
XspI CTAG 2 cut(s) 352, 578
ZraI GACGTC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.