RLG00000012079

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013426
Physical Location & Seq
Forward (+)
15028756 .. 15030279
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012079

Sequence Viewer

Length: 1524 bp
ATGAATTTCTTCAAGTCCGTATTCGCAGACGAGCCCGATCCGTCAAACCCCGAATCCGACTCCGAATCCGAATCGGGGCCTACCAGTAACCAAGGTCCAGATCCGAAGCCCCAGCCTACCGAACCCGATCCCAACCCAGCCGGCATTGGCGGGTGGAACTTCGGCGATCTGATCAAAACCATCGCCACCAAGTCCGAGACGGTCATCGAGACCTACCGCCGCGACTTGCAGGAATTCGGGTCGGGTCTGAAGAAAGAGATCGAGGTCGCCCAGGGGTCGCTGGAGACAGTCGGCACCAGAATCGATGAGTTGGGCAACACAGTCCTCGCAGGAACGGCCCAGATCATCTCCCAGGGCATCCTCGCCCCCGATCACGAATCCGATTCGTCCGATTCCAACAACACCTTGACCCCCCAGCGGAGCTTGAATTCCAACAAGTACAGTAGGTTCGAGTCTCAGGTCCGCGCGATTCAGGGTGACGTCAGCACCTACTGTGAGGAGCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCGGGGTTTGTGTTGGAGGAGAAGAGGGAGGAGATTGAGGGTTTGCTTGAAGGAGGGAATGGAGCAATGGAGAGTATTTACAACAAGGTTGCGCCGAATGTGGTTGATGATGAGACGTTTTGGAGCAGGTATTATTATAGGGTGTATAAGCTCAAGCAAGCTGAGGATGTTAGGGCGAATCTGGTGAAGAGGGCGATTTCGGTTGAATTGGAGGAGGAGTTGAGTTGGGATGTTGATGATGATGAGTATGATGAAAGTGAGGGCAATGTGGTTGCGAAATCGAGTTTAGGGAAGAGTAGTGAAGTTGGTGCTGAAGATGTGAAAGAGAAGGAGTTGAAGAGTGATGATCAGGTTGGAGATAAGGGCTCCTCAAAGGTGGGAGAGGTGAGCACTGTTGCTGAAGAGGCTAATGTGGCAGCGAAAACAGAGTCGATTAGCAAAGATTCGGAGCAAAAGATTGTCAAGGACGAGAGTTCCGGTGAGAAATTGCAAAGTGGGACTGCCAAGGTTGTTGAAGAGAAGGAAGGGAAGAGTCTGAAAGTTGATAATGACAAGAAAGAAAGTGCTGTGGAGTCCAGTGGTGACAAGGAGTCGGAGAAGAAAGTGAATGAAGTAGGGGATTCTGGGACGCCATCAACATCTGATGAGGAGAAGAAAGTGAATGTAGAAGGGGATTCTGGGAAGAAAGACTCGCCGCCATCTAAATCAGATGATAAAGCGGCTTTAGAGGTGAAGAATGAGGCTCCTGCATCTAGCAAAGAGAGTGGTGTATTGGCTGCTTCAGTCCGGCCCTCAGTAGAACCTGAGGAAGAAGACCTCGGCTGGGATGAGATTGAGGATCTTAGCAGCATTGATGAAAAGAAAGCGAACCCTGGTGCAAGTGGTGGAAGTGCTAATAGAGCTGAGCTGCAGAAGCGGCTCAGCACTGCGGAAGAAGAAGAAGACTTGAGCTGGGATATAGATGATGATGATGAACCCGCCAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

508

Amino Acids

55.11

Weight (kDa)

4.35

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 177 - 234 5.4e-15 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013426)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03350
fragaria_vesca FvH4_2g24111
malus_domestica MD03G1271200.v1.1
prunus_persica Prupe.8G247300_v2.0.a1
pyrus_communis pycom03g21590 pycom11g25850
rosa_chinensis RchiOBHm_Chr6g0291911
rosa_laevigata RLG00000012079
rosa_multiflora Rmu_co8044656.1_g000001 Rmu_sc0016851.1_g000001 Rmu_sc0030145.1_g000001
rosa_roxburghii Rroxscaffold_7G00175630
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG335300 Rh6BG342700 Rh6CG348900 Rh6DG335600
rosa_wichuraiana Rw6G029180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 483
Acc36I ACCTGC 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 293
AccII CGCG 3 cut(s) 222, 465, 467
AclWI GGATC 4 cut(s) 32, 95, 122, 1380
AcsI RAATTY 3 cut(s) 4, 233, 427
AcuI CTGAAG 4 cut(s) 269, 867, 954, 1299
AcyI GRCGYC 2 cut(s) 480, 1163
AfaI GTAC 2 cut(s) 440, 521
AfiI CCNNNNNNNGG 3 cut(s) 75, 417, 1357
AgsI TTSAA 6 cut(s) 13, 427, 584, 740, 871, 1049
AhdI GACNNNNNGTC 1 cut(s) 1123
AjnI CCWGG 3 cut(s) 270, 351, 1405
AluBI AGCT 7 cut(s) 423, 685, 695, 1436, 1441, 1485, 1520
AluI AGCT 7 cut(s) 423, 685, 695, 1436, 1441, 1485, 1520
Alw21I GWGCWC 1 cut(s) 926
Alw26I GTCTC 5 cut(s) 191, 203, 278, 459, 641
AlwI GGATC 4 cut(s) 32, 95, 122, 1380
AoxI GGCC 3 cut(s) 77, 336, 1322
ApeKI GCWGC 4 cut(s) 950, 1310, 1380, 1441
ApoI RAATTY 3 cut(s) 4, 233, 427
ArsI GACNNNNNNTTYG 2 cut(s) 947, 979
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 2 cut(s) 467, 628
AspS9I GGNCC 5 cut(s) 77, 95, 337, 460, 1323
AsuHPI GGTGA 6 cut(s) 488, 730, 931, 1025, 1127, 1276
AvaII GGWCC 2 cut(s) 95, 460
AxyI CCTNAGG 2 cut(s) 504, 1338
BanI GGYRCC 1 cut(s) 293
BanII GRGCYC 2 cut(s) 36, 902
BbsI GAAGAC 2 cut(s) 1353, 1482
Bbv12I GWGCWC 1 cut(s) 926
BbvCI CCTCAGC 1 cut(s) 696
BbvI GCAGC 4 cut(s) 962, 1297, 1392, 1428
BccI CCATC 3 cut(s) 188, 1174, 1240
BceAI ACGGC 1 cut(s) 351
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 3 cut(s) 272, 353, 1407
BclI TGATCA 2 cut(s) 171, 880
BcoDI GTCTC 5 cut(s) 191, 203, 278, 459, 641
BfaI CTAG 1 cut(s) 1287
BfmI CTRYAG 1 cut(s) 1442
BfuAI ACCTGC 1 cut(s) 651
BisI GCNGC 8 cut(s) 220, 951, 1229, 1254, 1311, 1381, 1442, 1451
BlpI GCTNAGC 2 cut(s) 1437, 1454
BlsI GCNGC 8 cut(s) 221, 952, 1230, 1255, 1312, 1382, 1443, 1452
Bme1390I CCNGG 3 cut(s) 272, 353, 1407
Bme18I GGWCC 2 cut(s) 95, 460
BmeRI GACNNNNNGTC 1 cut(s) 1123
BmgT120I GGNCC 5 cut(s) 77, 95, 337, 460, 1323
BmiI GGNNCC 5 cut(s) 78, 295, 501, 901, 1278
BmrFI CCNGG 3 cut(s) 272, 353, 1407
BmsI GCATC 2 cut(s) 366, 1292
BpiI GAAGAC 2 cut(s) 1353, 1482
BpmI CTGGAG 1 cut(s) 302
Bpu10I CCTNAGC 1 cut(s) 696
Bpu1102I GCTNAGC 2 cut(s) 1437, 1454
BpuEI CTTGAG 2 cut(s) 671, 1501
Bsa29I ATCGAT 1 cut(s) 303
BsaHI GRCGYC 2 cut(s) 480, 1163
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 8 cut(s) 91, 270, 271, 351, 352, 1038, 1351, 1405
BsaWI WCCGGW 1 cut(s) 1010
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 417, 1357
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 84, 1110
Bse21I CCTNAGG 2 cut(s) 504, 1338
Bse3DI GCAATG 2 cut(s) 606, 805
BseBI CCWGG 3 cut(s) 272, 353, 1407
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 8 cut(s) 91, 270, 271, 351, 352, 1038, 1351, 1405
BseGI GGATG 4 cut(s) 357, 706, 769, 1366
BseLI CCNNNNNNNGG 3 cut(s) 75, 417, 1357
BseMI GCAATG 2 cut(s) 606, 805
BseMII CTCAG 7 cut(s) 470, 495, 687, 1329, 1341, 1428, 1468
BseNI ACTGG 2 cut(s) 84, 1110
BseRI GAGGAG 8 cut(s) 512, 530, 566, 578, 761, 764, 892, 1196
BseXI GCAGC 4 cut(s) 962, 1297, 1392, 1428
BseYI CCCAGC 5 cut(s) 111, 136, 414, 1356, 1485
Bsh1236I CGCG 3 cut(s) 222, 465, 467
BshFI GGCC 3 cut(s) 79, 338, 1324
BshNI GGYRCC 1 cut(s) 293
BshVI ATCGAT 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 926
BsiSI CCGG 3 cut(s) 141, 1011, 1321
BslFI GGGAC 2 cut(s) 1045, 1174
BslI CCNNNNNNNGG 3 cut(s) 75, 417, 1357
BsmAI GTCTC 5 cut(s) 191, 203, 278, 459, 641
BsmBI CGTCTC 2 cut(s) 191, 641
BsmFI GGGAC 2 cut(s) 1045, 1174
BsnI GGCC 3 cut(s) 79, 338, 1324
Bso31I GGTCTC 1 cut(s) 203
Bsp1286I GDGCHC 3 cut(s) 36, 902, 926
Bsp1720I GCTNAGC 2 cut(s) 1437, 1454
BspANI GGCC 3 cut(s) 79, 338, 1324
BspCNI CTCAG 7 cut(s) 469, 496, 688, 1330, 1340, 1429, 1467
BspDI ATCGAT 1 cut(s) 303
BspFNI CGCG 3 cut(s) 222, 465, 467
BspLI GGNNCC 5 cut(s) 78, 295, 501, 901, 1278
BspMAI CTGCAG 1 cut(s) 1446
BspMI ACCTGC 1 cut(s) 651
BspPI GGATC 4 cut(s) 32, 95, 122, 1380
BspT107I GGYRCC 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 203
BsrDI GCAATG 2 cut(s) 606, 805
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 2 cut(s) 84, 1110
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 8 cut(s) 91, 270, 271, 351, 352, 1038, 1351, 1405
BssNI GRCGYC 2 cut(s) 480, 1163
BssT1I CCWWGG 2 cut(s) 91, 1038
Bst2UI CCWGG 3 cut(s) 272, 353, 1407
Bst4CI ACNGT 6 cut(s) 202, 289, 322, 443, 494, 928
Bst6I CTCTTC 7 cut(s) 551, 716, 821, 866, 930, 1044, 1058
BstACI GRCGYC 2 cut(s) 480, 1163
BstC8I GCNNGC 2 cut(s) 142, 693
BstDEI CTNAG 8 cut(s) 456, 504, 696, 1327, 1338, 1376, 1437, 1454
BstF5I GGATG 4 cut(s) 357, 706, 769, 1366
BstFNI CGCG 3 cut(s) 222, 465, 467
BstHHI GCGC 2 cut(s) 467, 628
BstMAI GTCTC 5 cut(s) 191, 203, 278, 459, 641
BstMWI GCNNNNNNNGC 6 cut(s) 335, 938, 947, 1433, 1447, 1450
BstNI CCWGG 3 cut(s) 272, 353, 1407
BstSCI CCNGG 3 cut(s) 270, 351, 1405
BstSFI CTRYAG 1 cut(s) 1442
BstUI CGCG 3 cut(s) 222, 465, 467
BstV1I GCAGC 4 cut(s) 962, 1297, 1392, 1428
BstV2I GAAGAC 2 cut(s) 1353, 1482
BstX2I RGATCY 2 cut(s) 100, 1372
BstYI RGATCY 2 cut(s) 100, 1372
Bsu15I ATCGAT 1 cut(s) 303
Bsu36I CCTNAGG 2 cut(s) 504, 1338
BsuRI GGCC 3 cut(s) 79, 338, 1324
BsuTUI ATCGAT 1 cut(s) 303
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 4 cut(s) 357, 706, 769, 1366
BtsI GCAGTG 1 cut(s) 1458
BtsIMutI CAGTG 3 cut(s) 924, 1117, 1458
BveI ACCTGC 1 cut(s) 651
Cac8I GCNNGC 2 cut(s) 142, 693
CfoI GCGC 2 cut(s) 467, 628
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 5 cut(s) 77, 95, 337, 460, 1323
ClaI ATCGAT 1 cut(s) 303
CseI GACGC 1 cut(s) 1171
Csp6I GTAC 2 cut(s) 439, 520
CspCI CAANNNNNGTGG 2 cut(s) 1279, 1314
CviQI GTAC 2 cut(s) 439, 520
DdeI CTNAG 8 cut(s) 456, 504, 696, 1327, 1338, 1376, 1437, 1454
DriI GACNNNNNGTC 1 cut(s) 1123
Eam1104I CTCTTC 7 cut(s) 551, 716, 821, 866, 930, 1044, 1058
Eam1105I GACNNNNNGTC 1 cut(s) 1123
EarI CTCTTC 7 cut(s) 551, 716, 821, 866, 930, 1044, 1058
Eco130I CCWWGG 2 cut(s) 91, 1038
Eco24I GRGCYC 2 cut(s) 36, 902
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 95, 460
Eco57I CTGAAG 4 cut(s) 269, 867, 954, 1299
Eco81I CCTNAGG 2 cut(s) 504, 1338
EcoO109I RGGNCCY 1 cut(s) 77
EcoRI GAATTC 2 cut(s) 233, 427
EcoRII CCWGG 3 cut(s) 270, 351, 1405
EcoT14I CCWWGG 2 cut(s) 91, 1038
EcoT38I GRGCYC 2 cut(s) 36, 902
ErhI CCWWGG 2 cut(s) 91, 1038
Esp3I CGTCTC 2 cut(s) 191, 641
FaiI YATR 4 cut(s) 672, 681, 783, 1493
FaqI GGGAC 2 cut(s) 1045, 1174
FauI CCCGC 2 cut(s) 143, 1519
FbaI TGATCA 2 cut(s) 171, 880
Fnu4HI GCNGC 8 cut(s) 220, 951, 1229, 1254, 1311, 1381, 1442, 1451
FokI GGATG 4 cut(s) 344, 713, 776, 1373
FriOI GRGCYC 2 cut(s) 36, 902
Fsp4HI GCNGC 8 cut(s) 220, 951, 1229, 1254, 1311, 1381, 1442, 1451
FspBI CTAG 1 cut(s) 1287
GlaI GCGC 2 cut(s) 466, 627
GluI GCNGC 8 cut(s) 220, 951, 1229, 1254, 1311, 1381, 1442, 1451
GsaI CCCAGC 5 cut(s) 115, 140, 418, 1360, 1489
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 3 cut(s) 79, 338, 1324
HapII CCGG 3 cut(s) 141, 1011, 1321
HgaI GACGC 1 cut(s) 1171
HhaI GCGC 2 cut(s) 467, 628
Hin1I GRCGYC 2 cut(s) 480, 1163
Hin6I GCGC 2 cut(s) 465, 626
HinP1I GCGC 2 cut(s) 465, 626
HindIII AAGCTT 1 cut(s) 1518
HpaII CCGG 3 cut(s) 141, 1011, 1321
HphI GGTGA 6 cut(s) 488, 730, 931, 1025, 1127, 1276
Hpy188III TCNNGA 3 cut(s) 98, 208, 374
HpyAV CCTTC 5 cut(s) 578, 856, 1048, 1052, 1196
HpyCH4III ACNGT 6 cut(s) 202, 289, 322, 443, 494, 928
HpyCH4IV ACGT 2 cut(s) 480, 650
HpyCH4V TGCA 5 cut(s) 229, 1024, 1283, 1412, 1444
HpyF10VI GCNNNNNNNGC 6 cut(s) 335, 938, 947, 1433, 1447, 1450
HpyF3I CTNAG 8 cut(s) 456, 504, 696, 1327, 1338, 1376, 1437, 1454
HpySE526I ACGT 2 cut(s) 480, 650
Hsp92I GRCGYC 2 cut(s) 480, 1163
HspAI GCGC 2 cut(s) 465, 626
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Ksp22I TGATCA 2 cut(s) 171, 880
LmnI GCTCC 7 cut(s) 420, 499, 596, 657, 905, 982, 1282
Lsp1109I GCAGC 4 cut(s) 962, 1297, 1392, 1428
LweI GCATC 2 cut(s) 366, 1292
MaeI CTAG 1 cut(s) 1287
MaeII ACGT 2 cut(s) 480, 650
MaeIII GTNAC 3 cut(s) 86, 476, 1115
MflI RGATCY 2 cut(s) 100, 1372
MhlI GDGCHC 3 cut(s) 36, 902, 926
MluCI AATT 5 cut(s) 4, 233, 427, 740, 1019
MlyI GAGTC 7 cut(s) 53, 461, 971, 1075, 1115, 1133, 1217
MmeI TCCRAC 6 cut(s) 81, 420, 456, 528, 868, 1107
MroNI GCCGGC 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 418
MspI CCGG 3 cut(s) 141, 1011, 1321
MspR9I CCNGG 3 cut(s) 272, 353, 1407
MvaI CCWGG 3 cut(s) 272, 353, 1407
MvnI CGCG 3 cut(s) 222, 465, 467
MwoI GCNNNNNNNGC 6 cut(s) 335, 938, 947, 1433, 1447, 1450
NaeI GCCGGC 1 cut(s) 142
NgoMIV GCCGGC 1 cut(s) 140
NlaIV GGNNCC 5 cut(s) 78, 295, 501, 901, 1278
NmeAIII GCCGAG 1 cut(s) 1332
NmuCI GTSAC 2 cut(s) 476, 1115
PasI CCCWGGG 2 cut(s) 271, 352
PdiI GCCGGC 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 8 cut(s) 221, 952, 1230, 1255, 1312, 1382, 1443, 1452
PleI GAGTC 7 cut(s) 53, 460, 970, 1074, 1114, 1132, 1217
PpsI GAGTC 7 cut(s) 53, 460, 970, 1074, 1114, 1132, 1217
Psp6I CCWGG 3 cut(s) 270, 351, 1405
PspFI CCCAGC 5 cut(s) 111, 136, 414, 1356, 1485
PspGI CCWGG 3 cut(s) 270, 351, 1405
PspN4I GGNNCC 5 cut(s) 78, 295, 501, 901, 1278
PspPI GGNCC 5 cut(s) 77, 95, 337, 460, 1323
PsrI GAACNNNNNNTAC 2 cut(s) 431, 463
PstI CTGCAG 1 cut(s) 1446
PsuI RGATCY 2 cut(s) 100, 1372
RsaI GTAC 2 cut(s) 440, 521
RsaNI GTAC 2 cut(s) 439, 520
SatI GCNGC 8 cut(s) 220, 951, 1229, 1254, 1311, 1381, 1442, 1451
Sau96I GGNCC 5 cut(s) 77, 95, 337, 460, 1323
SchI GAGTC 7 cut(s) 53, 461, 971, 1075, 1115, 1133, 1217
ScrFI CCNGG 3 cut(s) 272, 353, 1407
SduI GDGCHC 3 cut(s) 36, 902, 926
SfaNI GCATC 2 cut(s) 366, 1292
SfcI CTRYAG 1 cut(s) 1442
SinI GGWCC 2 cut(s) 95, 460
SmlI CTYRAG 2 cut(s) 686, 1480
SmoI CTYRAG 2 cut(s) 686, 1480
Sse9I AATT 5 cut(s) 4, 233, 427, 740, 1019
SspMI CTAG 1 cut(s) 1287
StyD4I CCNGG 3 cut(s) 270, 351, 1405
StyI CCWWGG 2 cut(s) 91, 1038
TaaI ACNGT 6 cut(s) 202, 289, 322, 443, 494, 928
TaiI ACGT 2 cut(s) 483, 653
TaqI TCGA 6 cut(s) 207, 261, 303, 450, 815, 965
TasI AATT 5 cut(s) 4, 233, 427, 740, 1019
TatI WGTACW 2 cut(s) 438, 519
TauI GCSGC 4 cut(s) 222, 1231, 1256, 1453
TscAI CASTG 3 cut(s) 931, 1117, 1465
TseFI GTSAC 2 cut(s) 476, 1115
TseI GCWGC 4 cut(s) 950, 1310, 1380, 1441
Tsp45I GTSAC 2 cut(s) 476, 1115
TspDTI ATGAA 5 cut(s) 17, 801, 1158, 1404, 1521
TspGWI ACGGA 2 cut(s) 7, 30
TspRI CASTG 3 cut(s) 931, 1117, 1465
VpaK11BI GGWCC 2 cut(s) 95, 460
XapI RAATTY 3 cut(s) 4, 233, 427
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 1287
ZraI GACGTC 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.