Rh6CG348900

BSD domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
53944166 .. 53945674
1509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG348900.1

Sequence Viewer

Length: 1509 bp
ATGAATTTCTTCAAGTCCGTATTCGCAGACGAGCCCGATCCGTCAAACCCCGAATCCGACTCAGAATCGGGGCCCACGAGTAACCAAGATCCAGATCCGAAGCCCCAGCCGAGCCAACCCGATCCCAACCCGGCCGGCATTGGCGGGTGGAACTTCGGCGATCTGATCAAAACCATCGCCACCAAGTCCGAGACCGTCATCGATACCTACCGCCGCGACTTGCAGGAATTCGGGTCGGGTCTGAAGAAAGAGATCGAGGTCGCCCAGGGGTCGCTGGAGACAGTCGGCACCAGAATCGATGAGTTGGGCAACACAGTCCTCGCAGGAACGGCCCAGATCATCTCCCAGGGCATCCTCGCCCCCGATCACGAATCCGATTCGTCCGATTCCAACAACACCTCGACCCCCCAGCGGAGCTTGAATTCCAACAAGTACAGTAGGTTCGAGTCTCAGGTGCGCGCGATTCAGGGTGACGCCAGCACCTACTGTGAGGAGCCTGAGGATTTGGAGGAGTATAGGCAGTGGAGATCGGGGTTTGTGTTGGAGGAGAAGAGGGAGGAGATTGAGGGTTTGCTTGAGGGGAATGGAGCAATGGAGAATATTTACAACAAGGTTGCGCCCAATGTGGTTGATGATGAGACGTTTTGGAGCAGGTATTATTATAGGGTGTATAAGCTCAAGCAAGCTGAGGATGTCAGGGCGAATCTAGTGAAGAGGGCGATTTCGGTTGAATTGGAGGAGGAGTTGAGTTGGGATGTTGATGATGATGAGTATGATGAAAGTGAGGGCAATGTGGTTGCGAAATCGAGTCTAGGGAAGAGTAGTGAAGTTGGTGCTGAAGATGTGAAAGAGAAGGAGTTGAAGAGTGATGATCAGGTTGGAGATAAGGGTTCCTCAAAGGTGGGAGAGGTGAGCAGTGTTGCTGAAGAGGCTAATGTGGCAGCGAAAACAGATTCGGTGGAGCAAAAGGTTGTCGAGGAAGAGAGTTCTGGTGAGAAATTGCAAAGTGGGACTTCTGAGGTTGTTGAAGAGAAGGAAGGGAAGAGCCTGAAAGTTGATAATGAGAAGAAAGAAAGTGCTGTGGAGTCTAGTGGTGATAAGGAGTCGGAGAAGAAAGTGAATCAAGTAGGGGATTCTGGGATGCCATCAAAATCTGATGAGGAGAAGAAAGTGAATGTAGAAGGGGATTCTGGGAAGAAAGACTTGCCGCCATCAAAATCGGATGATAAAGCGGCTTTAGAGGTGAAGAATGAGGCTCCTGCATCTAGCAAAGAGAGTGGTGTATCGGCTCCTGCTTCAGTCCGGCCCTCAGTAGAACCTGAGGAAGAAGACCTTGGCTGGGATGAGATTGAGGATCTTAGCAGCATTGATGAAAAGAAAGCAAACCCTGGTGCAAGTGGTGCAAGTGCTAATAGAGCTGAGCTGCAGAAGCGGCTCAGCACTGCGGAAGAAGAAGAAGACTTGAGCTGGGATATAGAAGATGATGATGATGAACCCGCCAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

502

Amino Acids

54.76

Weight (kDa)

4.31

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 175 - 231 3.1e-15 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013426)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 642
AccB1I GGYRCC 1 cut(s) 287
AccII CGCG 3 cut(s) 216, 459, 461
AciI CCGC 9 cut(s) 144, 211, 214, 412, 1208, 1232, 1432, 1445, 1497
AclWI GGATC 5 cut(s) 32, 83, 89, 116, 1362
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 3 cut(s) 4, 227, 421
AcuI CTGAAG 4 cut(s) 263, 858, 945, 1281
AcyI GRCGYC 1 cut(s) 474
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 411, 1339
AgsI TTSAA 5 cut(s) 13, 421, 731, 862, 1028
AjnI CCWGG 3 cut(s) 264, 345, 1387
AjuI GAANNNNNNNTTGG 2 cut(s) 1317, 1349
AluBI AGCT 7 cut(s) 417, 676, 686, 1418, 1423, 1467, 1505
AluI AGCT 7 cut(s) 417, 676, 686, 1418, 1423, 1467, 1505
Alw26I GTCTC 4 cut(s) 185, 272, 453, 632
AlwI GGATC 5 cut(s) 32, 83, 89, 116, 1362
AoxI GGCC 4 cut(s) 71, 132, 330, 1304
ApaI GGGCCC 1 cut(s) 75
ApeKI GCWGC 3 cut(s) 941, 1362, 1423
ApoI RAATTY 3 cut(s) 4, 227, 421
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 3 cut(s) 459, 461, 619
AspS9I GGNCC 4 cut(s) 71, 72, 331, 1305
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 5 cut(s) 482, 922, 1004, 1106, 1255
AxyI CCTNAGG 2 cut(s) 498, 1320
BaeGI GKGCMC 1 cut(s) 75
BanI GGYRCC 1 cut(s) 287
BanII GRGCYC 2 cut(s) 36, 75
BauI CACGAG 1 cut(s) 76
BbsI GAAGAC 2 cut(s) 1335, 1464
BbvCI CCTCAGC 1 cut(s) 687
BbvI GCAGC 3 cut(s) 953, 1374, 1410
BccI CCATC 3 cut(s) 182, 1153, 1219
BceAI ACGGC 1 cut(s) 345
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciT130I CCWGG 3 cut(s) 266, 347, 1389
BclI TGATCA 2 cut(s) 165, 871
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 4 cut(s) 185, 272, 453, 632
BfaI CTAG 4 cut(s) 707, 812, 1089, 1266
BfmI CTRYAG 1 cut(s) 1424
BfuAI ACCTGC 1 cut(s) 642
BisI GCNGC 7 cut(s) 214, 942, 1208, 1233, 1363, 1424, 1433
BlpI GCTNAGC 2 cut(s) 1419, 1436
BlsI GCNGC 7 cut(s) 215, 943, 1209, 1234, 1364, 1425, 1434
Bme1390I CCNGG 4 cut(s) 131, 266, 347, 1389
BmgT120I GGNCC 4 cut(s) 71, 72, 331, 1305
BmiI GGNNCC 7 cut(s) 72, 73, 289, 495, 892, 1257, 1290
BmrFI CCNGG 4 cut(s) 131, 266, 347, 1389
BmsI GCATC 3 cut(s) 360, 1131, 1271
BpiI GAAGAC 2 cut(s) 1335, 1464
BpmI CTGGAG 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 687
Bpu1102I GCTNAGC 2 cut(s) 1419, 1436
BpuEI CTTGAG 3 cut(s) 596, 662, 1483
BpuMI CCSGG 1 cut(s) 131
Bsa29I ATCGAT 2 cut(s) 201, 297
BsaBI GATNNNNATC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 474
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 6 cut(s) 264, 265, 345, 346, 1333, 1387
BsaXI ACNNNNNCTCC 2 cut(s) 728, 758
Bsc4I CCNNNNNNNGG 2 cut(s) 411, 1339
Bse118I RCCGGY 1 cut(s) 134
Bse21I CCTNAGG 2 cut(s) 498, 1320
Bse3DI GCAATG 2 cut(s) 597, 796
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 3 cut(s) 266, 347, 1389
BseCI ATCGAT 2 cut(s) 201, 297
BseDI CCNNGG 6 cut(s) 264, 265, 345, 346, 1333, 1387
BseGI GGATG 6 cut(s) 351, 697, 760, 1146, 1228, 1348
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 2 cut(s) 411, 1339
BseMI GCAATG 2 cut(s) 597, 796
BseMII CTCAG 9 cut(s) 75, 464, 489, 678, 1008, 1311, 1323, 1410, 1450
BsePI GCGCGC 1 cut(s) 457
BseRI GAGGAG 7 cut(s) 506, 524, 560, 572, 752, 755, 1175
BseSI GKGCMC 1 cut(s) 75
BseX3I CGGCCG 1 cut(s) 132
BseXI GCAGC 3 cut(s) 953, 1374, 1410
BseYI CCCAGC 4 cut(s) 105, 408, 1338, 1467
Bsh1236I CGCG 3 cut(s) 216, 459, 461
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 4 cut(s) 73, 134, 332, 1306
BshNI GGYRCC 1 cut(s) 287
BshVI ATCGAT 2 cut(s) 201, 297
BsiEI CGRYCG 1 cut(s) 135
BsiSI CCGG 3 cut(s) 131, 135, 1303
BslFI GGGAC 1 cut(s) 1024
BslI CCNNNNNNNGG 2 cut(s) 411, 1339
BsmAI GTCTC 4 cut(s) 185, 272, 453, 632
BsmBI CGTCTC 1 cut(s) 632
BsmFI GGGAC 1 cut(s) 1024
BsnI GGCC 4 cut(s) 73, 134, 332, 1306
Bso31I GGTCTC 1 cut(s) 185
Bsp120I GGGCCC 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 36, 75
Bsp1720I GCTNAGC 2 cut(s) 1419, 1436
BspACI CCGC 9 cut(s) 144, 211, 214, 412, 1208, 1232, 1432, 1445, 1497
BspANI GGCC 4 cut(s) 73, 134, 332, 1306
BspCNI CTCAG 9 cut(s) 74, 463, 490, 679, 1009, 1312, 1322, 1411, 1449
BspDI ATCGAT 2 cut(s) 201, 297
BspFNI CGCG 3 cut(s) 216, 459, 461
BspLI GGNNCC 7 cut(s) 72, 73, 289, 495, 892, 1257, 1290
BspMAI CTGCAG 1 cut(s) 1428
BspMI ACCTGC 1 cut(s) 642
BspPI GGATC 5 cut(s) 32, 83, 89, 116, 1362
BspQI GCTCTTC 1 cut(s) 1037
BspT107I GGYRCC 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 597, 796
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 6 cut(s) 264, 265, 345, 346, 1333, 1387
BssHII GCGCGC 1 cut(s) 457
BssNI GRCGYC 1 cut(s) 474
BssSI CACGAG 1 cut(s) 76
BssT1I CCWWGG 1 cut(s) 1333
Bst2BI CACGAG 1 cut(s) 76
Bst2UI CCWGG 3 cut(s) 266, 347, 1389
Bst4CI ACNGT 5 cut(s) 196, 283, 316, 437, 488
Bst6I CTCTTC 8 cut(s) 545, 707, 812, 857, 921, 975, 1023, 1037
BstACI GRCGYC 1 cut(s) 474
BstAPI GCANNNNNTGC 1 cut(s) 1400
BstC8I GCNNGC 4 cut(s) 136, 459, 478, 684
BstF5I GGATG 6 cut(s) 351, 697, 760, 1146, 1228, 1348
BstFNI CGCG 3 cut(s) 216, 459, 461
BstHHI GCGC 3 cut(s) 459, 461, 619
BstMAI GTCTC 4 cut(s) 185, 272, 453, 632
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 7 cut(s) 329, 929, 938, 1400, 1415, 1429, 1432
BstNI CCWGG 3 cut(s) 266, 347, 1389
BstSCI CCNGG 4 cut(s) 129, 264, 345, 1387
BstSFI CTRYAG 1 cut(s) 1424
BstSLI GKGCMC 1 cut(s) 75
BstUI CGCG 3 cut(s) 216, 459, 461
BstV1I GCAGC 3 cut(s) 953, 1374, 1410
BstV2I GAAGAC 2 cut(s) 1335, 1464
BstX2I RGATCY 3 cut(s) 88, 94, 1354
BstYI RGATCY 3 cut(s) 88, 94, 1354
BstZI CGGCCG 1 cut(s) 132
Bsu15I ATCGAT 2 cut(s) 201, 297
Bsu36I CCTNAGG 2 cut(s) 498, 1320
BsuRI GGCC 4 cut(s) 73, 134, 332, 1306
BsuTUI ATCGAT 2 cut(s) 201, 297
BtgZI GCGATG 1 cut(s) 160
BtsCI GGATG 6 cut(s) 351, 697, 760, 1146, 1228, 1348
BtsI GCAGTG 3 cut(s) 527, 922, 1440
BtsIMutI CAGTG 3 cut(s) 527, 922, 1440
BveI ACCTGC 1 cut(s) 642
Cac8I GCNNGC 4 cut(s) 136, 459, 478, 684
CfoI GCGC 3 cut(s) 459, 461, 619
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 4 cut(s) 71, 72, 331, 1305
ClaI ATCGAT 2 cut(s) 201, 297
CseI GACGC 1 cut(s) 482
Csp6I GTAC 1 cut(s) 433
CspCI CAANNNNNGTGG 2 cut(s) 1258, 1293
CviQI GTAC 1 cut(s) 433
EaeI YGGCCR 1 cut(s) 132
EagI CGGCCG 1 cut(s) 132
Eam1104I CTCTTC 8 cut(s) 545, 707, 812, 857, 921, 975, 1023, 1037
EarI CTCTTC 8 cut(s) 545, 707, 812, 857, 921, 975, 1023, 1037
EclXI CGGCCG 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 1333
Eco24I GRGCYC 2 cut(s) 36, 75
Eco31I GGTCTC 1 cut(s) 185
Eco52I CGGCCG 1 cut(s) 132
Eco57I CTGAAG 4 cut(s) 263, 858, 945, 1281
Eco81I CCTNAGG 2 cut(s) 498, 1320
EcoO109I RGGNCCY 1 cut(s) 71
EcoRI GAATTC 2 cut(s) 227, 421
EcoRII CCWGG 3 cut(s) 264, 345, 1387
EcoT14I CCWWGG 1 cut(s) 1333
EcoT38I GRGCYC 2 cut(s) 36, 75
ErhI CCWWGG 1 cut(s) 1333
Esp3I CGTCTC 1 cut(s) 632
FaiI YATR 5 cut(s) 516, 663, 672, 774, 1475
FalI AAGNNNNNCTT 6 cut(s) 997, 1029, 1187, 1219, 1317, 1349
FaqI GGGAC 1 cut(s) 1024
FauI CCCGC 2 cut(s) 137, 1504
FbaI TGATCA 2 cut(s) 165, 871
Fnu4HI GCNGC 7 cut(s) 214, 942, 1208, 1233, 1363, 1424, 1433
FokI GGATG 6 cut(s) 338, 704, 767, 1153, 1235, 1355
FriOI GRGCYC 2 cut(s) 36, 75
Fsp4HI GCNGC 7 cut(s) 214, 942, 1208, 1233, 1363, 1424, 1433
FspBI CTAG 4 cut(s) 707, 812, 1089, 1266
GlaI GCGC 3 cut(s) 458, 460, 618
GluI GCNGC 7 cut(s) 214, 942, 1208, 1233, 1363, 1424, 1433
GsaI CCCAGC 4 cut(s) 109, 412, 1342, 1471
GsuI CTGGAG 1 cut(s) 296
HaeIII GGCC 4 cut(s) 73, 134, 332, 1306
HapII CCGG 3 cut(s) 131, 135, 1303
HgaI GACGC 1 cut(s) 482
HhaI GCGC 3 cut(s) 459, 461, 619
Hin1I GRCGYC 1 cut(s) 474
Hin6I GCGC 3 cut(s) 457, 459, 617
HinP1I GCGC 3 cut(s) 457, 459, 617
HindIII AAGCTT 1 cut(s) 1503
HpaII CCGG 3 cut(s) 131, 135, 1303
HphI GGTGA 5 cut(s) 482, 922, 1004, 1106, 1255
Hpy188III TCNNGA 2 cut(s) 92, 368
HpyAV CCTTC 4 cut(s) 847, 1027, 1031, 1175
HpyCH4III ACNGT 5 cut(s) 196, 283, 316, 437, 488
HpyCH4IV ACGT 1 cut(s) 641
HpyCH4V TGCA 6 cut(s) 223, 1003, 1262, 1394, 1403, 1426
HpyF10VI GCNNNNNNNGC 7 cut(s) 329, 929, 938, 1400, 1415, 1429, 1432
HpySE526I ACGT 1 cut(s) 641
Hsp92I GRCGYC 1 cut(s) 474
HspAI GCGC 3 cut(s) 457, 459, 617
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
Ksp22I TGATCA 2 cut(s) 165, 871
LguI GCTCTTC 1 cut(s) 1037
LmnI GCTCC 7 cut(s) 414, 493, 587, 648, 961, 1261, 1294
Lsp1109I GCAGC 3 cut(s) 953, 1374, 1410
LweI GCATC 3 cut(s) 360, 1131, 1271
MaeI CTAG 4 cut(s) 707, 812, 1089, 1266
MaeII ACGT 1 cut(s) 641
MaeIII GTNAC 2 cut(s) 80, 470
MflI RGATCY 3 cut(s) 88, 94, 1354
MhlI GDGCHC 2 cut(s) 36, 75
MluCI AATT 5 cut(s) 4, 227, 421, 731, 998
MlyI GAGTC 5 cut(s) 53, 455, 817, 1094, 1112
MmeI TCCRAC 6 cut(s) 81, 414, 450, 522, 859, 1086
MroNI GCCGGC 1 cut(s) 134
MroXI GAANNNNTTC 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 3 cut(s) 131, 135, 1303
MspR9I CCNGG 4 cut(s) 131, 266, 347, 1389
MvaI CCWGG 3 cut(s) 266, 347, 1389
MvnI CGCG 3 cut(s) 216, 459, 461
MwoI GCNNNNNNNGC 7 cut(s) 329, 929, 938, 1400, 1415, 1429, 1432
NaeI GCCGGC 1 cut(s) 136
NciI CCSGG 1 cut(s) 131
NgoMIV GCCGGC 1 cut(s) 134
NlaIV GGNNCC 7 cut(s) 72, 73, 289, 495, 892, 1257, 1290
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 470
PasI CCCWGGG 2 cut(s) 265, 346
PauI GCGCGC 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 1037
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PdiI GCCGGC 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 7 cut(s) 215, 943, 1209, 1234, 1364, 1425, 1434
PleI GAGTC 5 cut(s) 53, 454, 816, 1093, 1111
PpsI GAGTC 5 cut(s) 53, 454, 816, 1093, 1111
Psp6I CCWGG 3 cut(s) 264, 345, 1387
PspFI CCCAGC 4 cut(s) 105, 408, 1338, 1467
PspGI CCWGG 3 cut(s) 264, 345, 1387
PspN4I GGNNCC 7 cut(s) 72, 73, 289, 495, 892, 1257, 1290
PspOMI GGGCCC 1 cut(s) 71
PspPI GGNCC 4 cut(s) 71, 72, 331, 1305
PsrI GAACNNNNNNTAC 2 cut(s) 425, 457
PstI CTGCAG 1 cut(s) 1428
PsuI RGATCY 3 cut(s) 88, 94, 1354
PteI GCGCGC 1 cut(s) 457
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
SapI GCTCTTC 1 cut(s) 1037
SatI GCNGC 7 cut(s) 214, 942, 1208, 1233, 1363, 1424, 1433
Sau96I GGNCC 4 cut(s) 71, 72, 331, 1305
SchI GAGTC 5 cut(s) 53, 455, 817, 1094, 1112
ScrFI CCNGG 4 cut(s) 131, 266, 347, 1389
SduI GDGCHC 2 cut(s) 36, 75
SfaNI GCATC 3 cut(s) 360, 1131, 1271
SfcI CTRYAG 1 cut(s) 1424
SmlI CTYRAG 3 cut(s) 575, 677, 1462
SmoI CTYRAG 3 cut(s) 575, 677, 1462
Sse9I AATT 5 cut(s) 4, 227, 421, 731, 998
SsiI CCGC 9 cut(s) 144, 211, 214, 412, 1208, 1232, 1432, 1445, 1497
SspI AATATT 1 cut(s) 601
SspMI CTAG 4 cut(s) 707, 812, 1089, 1266
StyD4I CCNGG 4 cut(s) 129, 264, 345, 1387
StyI CCWWGG 1 cut(s) 1333
TaaI ACNGT 5 cut(s) 196, 283, 316, 437, 488
TaiI ACGT 1 cut(s) 644
TaqI TCGA 7 cut(s) 201, 255, 297, 401, 444, 806, 975
TasI AATT 5 cut(s) 4, 227, 421, 731, 998
TatI WGTACW 1 cut(s) 432
TauI GCSGC 4 cut(s) 216, 1210, 1235, 1435
TscAI CASTG 3 cut(s) 527, 922, 1447
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 3 cut(s) 941, 1362, 1423
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 4 cut(s) 17, 792, 1386, 1506
TspGWI ACGGA 2 cut(s) 7, 30
TspRI CASTG 3 cut(s) 527, 922, 1447
XapI RAATTY 3 cut(s) 4, 227, 421
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 4 cut(s) 707, 812, 1089, 1266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.