AT1G04000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010790
Physical Location & Seq
Reverse (-)
1027853 .. 1029119
1267 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04000.1

Sequence Viewer

Length: 459 bp
ATGAACACCAAAACGATGCGTCTTCCCCCACGTCGCGTTCTAACGGCGGATAAGCGCAAAGAACGAGACGCCTTCATCTCCTCCGTCACCGATAATCCGCCGGAAATCGCCAAGTTTCCCTCTCCGCCGCCTAAACTTGTTCCTCCGCCGGTTAATCCCATTTCCAAGAAATCTTCAACCGCAGCAGCCGAGCCGATCGGCTCGAACCAACTGATGTTAGCCGGTTATCTGAGCCACGAGTACCTCACCCAAGGCACACTCTTCGGAGAGCAATGGAACCAGGCTCGAGCCCAAGCCGAGTCCAGTAAGATAAAGCCGAGCCATACTGTTGAGCCGGCTGAGGAATGTGAGCCGAAACGGAAGAGGTATAGGGAGGTTGCTAATCTTCTCCGGTCAGATGGGGCCCAACTGCCCGGCATCGTCAATCCTGCCCAGCTTGCCCGATTTCTCAAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.85

Weight (kDa)

9.83

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04000 AT5G44060
fragaria_vesca FvH4_2g20950
malus_domestica MD05G1192900.v1.1 MD10G1179300.v1.1
prunus_persica Prupe.8G219100_v2.0.a1
pyrus_communis pycom05g17980 pycom10g15550
rosa_chinensis RchiOBHm_Chr6g0287331
rosa_laevigata RLG00000012498
rosa_multiflora Rmu_co8349819.1_g000001 Rmu_sc0004701.1_g000001
rosa_roxburghii Rroxscaffold_7G00181530
rosa_rugosa Rorug06G0187100
rosa_samantha Rh6AG298500 Rh6BG304100 Rh6CG305600 Rh6CG312600 Rh6DG295900
rosa_wichuraiana Rw6G025800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 36
AciI CCGC 6 cut(s) 47, 98, 125, 128, 146, 180
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 1 cut(s) 242
AgsI TTSAA 1 cut(s) 177
AjiI CACGTC 1 cut(s) 32
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 1 cut(s) 436
AluI AGCT 1 cut(s) 436
Alw26I GTCTC 1 cut(s) 60
Ama87I CYCGRG 1 cut(s) 285
AoxI GGCC 1 cut(s) 402
ApaI GGGCCC 1 cut(s) 406
ApeKI GCWGC 2 cut(s) 182, 185
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 402, 403
AsuC2I CCSGG 1 cut(s) 414
AsuHPI GGTGA 2 cut(s) 79, 238
AvaI CYCGRG 1 cut(s) 285
BaeGI GKGCMC 1 cut(s) 406
BanII GRGCYC 2 cut(s) 292, 406
BauI CACGAG 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 14
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 2 cut(s) 194, 197
BccI CCATC 1 cut(s) 392
BceAI ACGGC 1 cut(s) 60
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 1 cut(s) 281
BcnI CCSGG 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 60
BisI GCNGC 3 cut(s) 128, 183, 186
BlsI GCNGC 3 cut(s) 129, 184, 187
Bme1390I CCNGG 2 cut(s) 281, 414
BmeT110I CYCGRG 1 cut(s) 285
BmgBI CACGTC 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 402, 403
BmiI GGNNCC 3 cut(s) 278, 403, 404
BmrFI CCNGG 2 cut(s) 281, 414
BmsI GCATC 2 cut(s) 6, 426
BpiI GAAGAC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 339
BpuMI CCSGG 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 250
BsaWI WCCGGW 1 cut(s) 390
Bse118I RCCGGY 3 cut(s) 148, 221, 334
Bse1I ACTGG 1 cut(s) 303
Bse3DI GCAATG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 250
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 2 cut(s) 221, 330
BseNI ACTGG 1 cut(s) 303
BseRI GAGGAG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 2 cut(s) 194, 197
BseYI CCCAGC 1 cut(s) 432
Bsh1236I CGCG 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 404
BsiEI CGRYCG 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 6 cut(s) 101, 149, 222, 335, 391, 414
BsmAI GTCTC 1 cut(s) 60
BsmBI CGTCTC 1 cut(s) 60
BsnI GGCC 1 cut(s) 404
BsoBI CYCGRG 1 cut(s) 285
Bsp120I GGGCCC 1 cut(s) 402
Bsp1286I GDGCHC 2 cut(s) 292, 406
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 6 cut(s) 47, 98, 125, 128, 146, 180
BspANI GGCC 1 cut(s) 404
BspCNI CTCAG 2 cut(s) 222, 331
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 3 cut(s) 278, 403, 404
BsrDI GCAATG 1 cut(s) 278
BsrFI RCCGGY 3 cut(s) 148, 221, 334
BsrI ACTGG 1 cut(s) 303
BssAI RCCGGY 3 cut(s) 148, 221, 334
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 195
BssNI GRCGYC 1 cut(s) 69
BssSI CACGAG 1 cut(s) 236
BssT1I CCWWGG 1 cut(s) 250
Bst2BI CACGAG 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 2 cut(s) 328, 456
Bst6I CTCTTC 2 cut(s) 266, 356
BstACI GRCGYC 1 cut(s) 69
BstC8I GCNNGC 2 cut(s) 336, 438
BstDEI CTNAG 2 cut(s) 230, 339
BstFNI CGCG 1 cut(s) 36
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 1 cut(s) 195
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstNI CCWGG 1 cut(s) 281
BstSCI CCNGG 2 cut(s) 279, 412
BstSLI GKGCMC 1 cut(s) 406
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 2 cut(s) 194, 197
BstV2I GAAGAC 1 cut(s) 14
BsuRI GGCC 1 cut(s) 404
BtrI CACGTC 1 cut(s) 32
Cac8I GCNNGC 2 cut(s) 336, 438
CfoI GCGC 1 cut(s) 57
Cfr10I RCCGGY 3 cut(s) 148, 221, 334
Cfr13I GGNCC 2 cut(s) 402, 403
CseI GACGC 2 cut(s) 8, 77
Csp6I GTAC 1 cut(s) 241
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 230, 339
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 266, 356
EarI CTCTTC 2 cut(s) 266, 356
EciI GGCGGA 4 cut(s) 62, 87, 114, 135
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 2 cut(s) 292, 406
Eco88I CYCGRG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 2 cut(s) 292, 406
ErhI CCWWGG 1 cut(s) 250
Esp3I CGTCTC 1 cut(s) 60
FaiI YATR 2 cut(s) 324, 369
Fnu4HI GCNGC 3 cut(s) 128, 183, 186
FriOI GRGCYC 2 cut(s) 292, 406
Fsp4HI GCNGC 3 cut(s) 128, 183, 186
GlaI GCGC 1 cut(s) 56
GluI GCNGC 3 cut(s) 128, 183, 186
GsaI CCCAGC 1 cut(s) 436
HaeIII GGCC 1 cut(s) 404
HapII CCGG 6 cut(s) 101, 149, 222, 335, 391, 414
HgaI GACGC 2 cut(s) 8, 77
HhaI GCGC 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 69
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 1 cut(s) 299
HpaII CCGG 6 cut(s) 101, 149, 222, 335, 391, 414
HphI GGTGA 2 cut(s) 79, 238
Hpy188I TCNGA 3 cut(s) 231, 266, 397
Hpy99I CGWCG 1 cut(s) 36
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 2 cut(s) 328, 456
HpyCH4IV ACGT 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 2 cut(s) 230, 339
HpySE526I ACGT 1 cut(s) 31
Hsp92I GRCGYC 1 cut(s) 69
HspAI GCGC 1 cut(s) 55
KroI GCCGGC 1 cut(s) 334
KroNI GCCGGC 1 cut(s) 336
Kzo9I GATC 1 cut(s) 195
Lsp1109I GCAGC 2 cut(s) 194, 197
LweI GCATC 2 cut(s) 6, 426
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 1 cut(s) 85
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 5 cut(s) 14, 165, 253, 373, 377
MhlI GDGCHC 2 cut(s) 292, 406
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 7 cut(s) 91, 130, 153, 254, 334, 357, 367
MroNI GCCGGC 1 cut(s) 334
MseI TTAA 1 cut(s) 153
MspI CCGG 6 cut(s) 101, 149, 222, 335, 391, 414
MspR9I CCNGG 2 cut(s) 281, 414
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 437
NaeI GCCGGC 1 cut(s) 336
NciI CCSGG 1 cut(s) 414
NdeII GATC 1 cut(s) 195
NgoMIV GCCGGC 1 cut(s) 334
NlaIV GGNNCC 3 cut(s) 278, 403, 404
NmeAIII GCCGAG 3 cut(s) 214, 322, 342
NmuCI GTSAC 1 cut(s) 85
PaeR7I CTCGAG 1 cut(s) 285
PdiI GCCGGC 1 cut(s) 336
PkrI GCNGC 3 cut(s) 129, 184, 187
Ple19I CGATCG 1 cut(s) 198
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 432
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 3 cut(s) 278, 403, 404
PspOMI GGGCCC 1 cut(s) 402
PspPI GGNCC 2 cut(s) 402, 403
PspXI VCTCGAGB 1 cut(s) 285
PvuI CGATCG 1 cut(s) 198
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 3 cut(s) 128, 183, 186
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 2 cut(s) 402, 403
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 2 cut(s) 281, 414
SduI GDGCHC 2 cut(s) 292, 406
SetI ASST 5 cut(s) 34, 246, 368, 378, 438
SfaNI GCATC 2 cut(s) 6, 426
Sfr274I CTCGAG 1 cut(s) 285
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
SsiI CCGC 6 cut(s) 47, 98, 125, 128, 146, 180
StyD4I CCNGG 2 cut(s) 279, 412
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 328, 456
TaiI ACGT 1 cut(s) 34
TaqI TCGA 2 cut(s) 203, 286
TauI GCSGC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 2 cut(s) 182, 185
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 17, 64
TspGWI ACGGA 2 cut(s) 73, 373
XhoI CTCGAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.