Rroxscaffold_7G00181530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010790
Physical Location & Seq
Reverse (-)
20602119 .. 20602562
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181530.1

Sequence Viewer

Length: 444 bp
ATGAACACCAAAACGATGCGTTTGCCGCCACGTCGGATTTCGACGACCAATGCGTCATCAAATAGCCCCAACACCAAGCGCAAGGAGAGAGAGAGCGCGCTCGACGCGCCCCACCCAGCCAAGGCGCTCAAGCTGTCCCCCACCGAGCCGGCTCATCAAGCCGCCGTATCCGAGCCGGCTCTGGCCTCCGGTCATCTCCTAGCTGGCTATTTGGCCCATGAATTCCTCACCAAGGGCACCCTCCTCGGGCAGCTGTGGGACCCGACCGTCCGATCTTCAGCCGACGAGCAACAGGTCACGAAATCCCCAGATCGGCGCGAAGCCGAGCCGCAGTACGAGAAGCTGGAGAGGTACGTGGAAGTAGCTGATTTGCTGAAGACGGATGGGGCTCAGTTAGCTGGCATTGTCAACCCTACTCAGCTTGCACGCTTTTTACAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.15

Weight (kDa)

8.96

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04000 AT5G44060
fragaria_vesca FvH4_2g20950
malus_domestica MD05G1192900.v1.1 MD10G1179300.v1.1
prunus_persica Prupe.8G219100_v2.0.a1
pyrus_communis pycom05g17980 pycom10g15550
rosa_chinensis RchiOBHm_Chr6g0287331
rosa_laevigata RLG00000012498
rosa_multiflora Rmu_co8349819.1_g000001 Rmu_sc0004701.1_g000001
rosa_roxburghii Rroxscaffold_7G00181530
rosa_rugosa Rorug06G0187100
rosa_samantha Rh6AG298500 Rh6BG304100 Rh6CG305600 Rh6CG312600 Rh6DG295900
rosa_wichuraiana Rw6G025800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 52, 266
AccB1I GGYRCC 1 cut(s) 236
AccII CGCG 3 cut(s) 98, 107, 318
AciI CCGC 3 cut(s) 26, 162, 329
AcsI RAATTY 1 cut(s) 221
AcuI CTGAAG 2 cut(s) 261, 395
AfaI GTAC 2 cut(s) 335, 353
AfiI CCNNNNNNNGG 4 cut(s) 121, 232, 246, 312
AjiI CACGTC 1 cut(s) 32
AluBI AGCT 7 cut(s) 133, 203, 253, 343, 365, 398, 421
AluI AGCT 7 cut(s) 133, 203, 253, 343, 365, 398, 421
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 2 cut(s) 183, 213
ApeKI GCWGC 1 cut(s) 250
ApoI RAATTY 1 cut(s) 221
AspLEI GCGC 6 cut(s) 81, 98, 100, 109, 127, 318
AspS9I GGNCC 2 cut(s) 214, 259
AsuHPI GGTGA 1 cut(s) 220
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 383
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 377
BceAI ACGGC 1 cut(s) 149
BcgI CGANNNNNNTGC 4 cut(s) 4, 38, 226, 260
BciVI GTATCC 1 cut(s) 178
BfaI CTAG 1 cut(s) 200
BfoI RGCGCY 1 cut(s) 128
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 4 cut(s) 26, 162, 251, 329
BlsI GCNGC 4 cut(s) 27, 163, 252, 330
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 214, 259
BmiI GGNNCC 3 cut(s) 238, 260, 261
BmsI GCATC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 383
BpmI CTGGAG 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 355
BsaJI CCNNGG 3 cut(s) 120, 231, 244
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 232, 246, 312
Bse118I RCCGGY 2 cut(s) 148, 175
BseDI CCNNGG 3 cut(s) 120, 231, 244
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 4 cut(s) 121, 232, 246, 312
BseMII CTCAG 2 cut(s) 404, 431
BsePI GCGCGC 1 cut(s) 96
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 1 cut(s) 262
BseYI CCCAGC 1 cut(s) 115
Bsh1236I CGCG 3 cut(s) 98, 107, 318
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 2 cut(s) 185, 215
BshNI GGYRCC 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 3 cut(s) 149, 176, 189
BslFI GGGAC 2 cut(s) 121, 272
BslI CCNNNNNNNGG 4 cut(s) 121, 232, 246, 312
BsmFI GGGAC 2 cut(s) 121, 272
BsnI GGCC 2 cut(s) 185, 215
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 2 cut(s) 239, 391
Bsp143I GATC 2 cut(s) 272, 310
BspACI CCGC 3 cut(s) 26, 162, 329
BspANI GGCC 2 cut(s) 185, 215
BspCNI CTCAG 2 cut(s) 403, 430
BspFNI CGCG 3 cut(s) 98, 107, 318
BspLI GGNNCC 3 cut(s) 238, 260, 261
BspT107I GGYRCC 1 cut(s) 236
BsrFI RCCGGY 2 cut(s) 148, 175
BssAI RCCGGY 2 cut(s) 148, 175
BssECI CCNNGG 3 cut(s) 120, 231, 244
BssHII GCGCGC 1 cut(s) 96
BssMI GATC 2 cut(s) 272, 310
BssT1I CCWWGG 2 cut(s) 120, 231
Bst4CI ACNGT 2 cut(s) 268, 438
BstBAI YACGTR 1 cut(s) 355
BstC8I GCNNGC 7 cut(s) 98, 150, 177, 205, 400, 423, 427
BstDEI CTNAG 2 cut(s) 390, 417
BstENI CCTNNNNNAGG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 388
BstFNI CGCG 3 cut(s) 98, 107, 318
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 6 cut(s) 81, 98, 100, 109, 127, 318
BstKTI GATC 2 cut(s) 275, 313
BstMBI GATC 2 cut(s) 272, 310
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 5 cut(s) 25, 104, 106, 158, 395
BstSLI GKGCMC 1 cut(s) 239
BstUI CGCG 3 cut(s) 98, 107, 318
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 383
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 2 cut(s) 185, 215
BtrI CACGTC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 388
Cac8I GCNNGC 7 cut(s) 98, 150, 177, 205, 400, 423, 427
CfoI GCGC 6 cut(s) 81, 98, 100, 109, 127, 318
Cfr10I RCCGGY 2 cut(s) 148, 175
Cfr13I GGNCC 2 cut(s) 214, 259
CseI GACGC 2 cut(s) 42, 113
Csp6I GTAC 2 cut(s) 334, 352
CviAII CATG 1 cut(s) 218
CviQI GTAC 2 cut(s) 334, 352
DdeI CTNAG 2 cut(s) 390, 417
DpnI GATC 2 cut(s) 274, 312
DpnII GATC 2 cut(s) 272, 310
DrdI GACNNNNNNGTC 2 cut(s) 52, 266
DseDI GACNNNNNNGTC 2 cut(s) 52, 266
Eco130I CCWWGG 2 cut(s) 120, 231
Eco24I GRGCYC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 2 cut(s) 261, 395
Eco88I CYCGRG 1 cut(s) 245
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 221
EcoT14I CCWWGG 2 cut(s) 120, 231
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 2 cut(s) 120, 231
FaeI CATG 1 cut(s) 221
FaiI YATR 1 cut(s) 219
FaqI GGGAC 2 cut(s) 121, 272
FatI CATG 1 cut(s) 217
Fnu4HI GCNGC 4 cut(s) 26, 162, 251, 329
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 4 cut(s) 26, 162, 251, 329
FspBI CTAG 1 cut(s) 200
GlaI GCGC 6 cut(s) 80, 97, 99, 108, 126, 317
GluI GCNGC 4 cut(s) 26, 162, 251, 329
GsaI CCCAGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 365
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 2 cut(s) 185, 215
HapII CCGG 3 cut(s) 149, 176, 189
HgaI GACGC 2 cut(s) 42, 113
HhaI GCGC 6 cut(s) 81, 98, 100, 109, 127, 318
Hin1II CATG 1 cut(s) 221
Hin6I GCGC 6 cut(s) 79, 96, 98, 107, 125, 316
HinP1I GCGC 6 cut(s) 79, 96, 98, 107, 125, 316
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HpaII CCGG 3 cut(s) 149, 176, 189
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 3 cut(s) 36, 172, 272
Hpy188III TCNNGA 1 cut(s) 298
Hpy8I GTNNAC 1 cut(s) 409
Hpy99I CGWCG 4 cut(s) 36, 46, 107, 287
HpyCH4III ACNGT 2 cut(s) 268, 438
HpyCH4IV ACGT 2 cut(s) 31, 354
HpyCH4V TGCA 1 cut(s) 425
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 104, 106, 158, 395
HpyF3I CTNAG 2 cut(s) 390, 417
HpySE526I ACGT 2 cut(s) 31, 354
Hsp92II CATG 1 cut(s) 221
HspAI GCGC 6 cut(s) 79, 96, 98, 107, 125, 316
KflI GGGWCCC 1 cut(s) 259
KroI GCCGGC 2 cut(s) 148, 175
KroNI GCCGGC 2 cut(s) 150, 177
Kzo9I GATC 2 cut(s) 272, 310
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 1 cut(s) 6
MaeI CTAG 1 cut(s) 200
MaeII ACGT 2 cut(s) 31, 354
MaeIII GTNAC 1 cut(s) 295
MalI GATC 2 cut(s) 274, 312
MboI GATC 2 cut(s) 272, 310
MboII GAAGA 2 cut(s) 267, 388
MhlI GDGCHC 2 cut(s) 239, 391
MluCI AATT 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 14
MnlI CCTC 5 cut(s) 196, 236, 251, 254, 342
MroNI GCCGGC 2 cut(s) 148, 175
MspA1I CMGCKG 1 cut(s) 253
MspI CCGG 3 cut(s) 149, 176, 189
MvnI CGCG 3 cut(s) 98, 107, 318
MwoI GCNNNNNNNGC 5 cut(s) 25, 104, 106, 158, 395
NaeI GCCGGC 2 cut(s) 150, 177
NdeII GATC 2 cut(s) 272, 310
NgoMIV GCCGGC 2 cut(s) 148, 175
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 3 cut(s) 238, 260, 261
NmeAIII GCCGAG 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 295
PauI GCGCGC 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PdiI GCCGGC 2 cut(s) 150, 177
PkrI GCNGC 4 cut(s) 27, 163, 252, 330
Ppu21I YACGTR 1 cut(s) 355
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 115
PspN4I GGNNCC 3 cut(s) 238, 260, 261
PspPI GGNCC 2 cut(s) 214, 259
PspPPI RGGWCCY 1 cut(s) 259
PteI GCGCGC 1 cut(s) 96
PvuII CAGCTG 1 cut(s) 253
RsaI GTAC 2 cut(s) 335, 353
RsaNI GTAC 2 cut(s) 334, 352
SatI GCNGC 4 cut(s) 26, 162, 251, 329
Sau3AI GATC 2 cut(s) 272, 310
Sau96I GGNCC 2 cut(s) 214, 259
SduI GDGCHC 2 cut(s) 239, 391
SfaNI GCATC 1 cut(s) 6
SinI GGWCC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 1 cut(s) 221
SsiI CCGC 3 cut(s) 26, 162, 329
SspMI CTAG 1 cut(s) 200
StyI CCWWGG 2 cut(s) 120, 231
TaaI ACNGT 2 cut(s) 268, 438
TaiI ACGT 2 cut(s) 34, 357
TaqI TCGA 2 cut(s) 41, 102
TasI AATT 1 cut(s) 221
TauI GCSGC 3 cut(s) 28, 164, 331
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 17, 234
TspGWI ACGGA 1 cut(s) 395
VpaK11BI GGWCC 1 cut(s) 259
XagI CCTNNNNNAGG 1 cut(s) 230
XapI RAATTY 1 cut(s) 221
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.