RchiOBHm_Chr6g0287331

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010790
Physical Location & Seq
Forward (+)
50701936 .. 50703156
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25774

Sequence Viewer

Length: 450 bp
ATGAACACCAAAACGATGCGTTTGCCGCCACGTCGGATTTCGACGACCAATGCGTCATCAAATAGCAACGCTCCCACCACCAAGCGCAAGGAGACAGAGAGTGCGCTCGACGCGCCCCACCCAGCCAAGGCGCTCAAGCTGTCCCCCACCGAGCCGGCTCATCAAGCCGCCGTATCCGAGCCGGCTCTTGCCTCCTGTCATCTCCTAGCTGGCTATTTGGCCCATGAATTCCTCACCAAGGGCACCCTCCTCGGGCAGCTGTGGGACCCGACCGCTCGATCTTCCGCCGAGGAGCAACCGGTCACTAAATCCCCAGATCGGCGCGAAGCAGAGCCGCAGTACGAGAAGCTGGAGAGGTACGTGGAAGTAGCTGATTTGCTGAAGACGGATGGGGCTCAGTTAGCTGGCATTGTCAACCCTACTCAGCTTGCACGCTTTTTACAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.27

Weight (kDa)

7.89

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04000 AT5G44060
fragaria_vesca FvH4_2g20950
malus_domestica MD05G1192900.v1.1 MD10G1179300.v1.1
prunus_persica Prupe.8G219100_v2.0.a1
pyrus_communis pycom05g17980 pycom10g15550
rosa_chinensis RchiOBHm_Chr6g0287331
rosa_laevigata RLG00000012498
rosa_multiflora Rmu_co8349819.1_g000001 Rmu_sc0004701.1_g000001
rosa_roxburghii Rroxscaffold_7G00181530
rosa_rugosa Rorug06G0187100
rosa_samantha Rh6AG298500 Rh6BG304100 Rh6CG305600 Rh6CG312600 Rh6DG295900
rosa_wichuraiana Rw6G025800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AccB1I GGYRCC 1 cut(s) 242
AccBSI CCGCTC 1 cut(s) 275
AccII CGCG 2 cut(s) 113, 324
AciI CCGC 5 cut(s) 26, 168, 273, 285, 335
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 401
AfaI GTAC 2 cut(s) 341, 359
AfiI CCNNNNNNNGG 4 cut(s) 127, 238, 252, 318
AgeI ACCGGT 1 cut(s) 298
AjiI CACGTC 1 cut(s) 32
AluBI AGCT 7 cut(s) 139, 209, 259, 349, 371, 404, 427
AluI AGCT 7 cut(s) 139, 209, 259, 349, 371, 404, 427
Alw26I GTCTC 1 cut(s) 86
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 227
AsiGI ACCGGT 1 cut(s) 298
AspLEI GCGC 5 cut(s) 87, 106, 115, 133, 324
AspS9I GGNCC 2 cut(s) 220, 265
AsuHPI GGTGA 1 cut(s) 226
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 1 cut(s) 265
BaeGI GKGCMC 1 cut(s) 245
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 397
BbsI GAAGAC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 268
BccI CCATC 1 cut(s) 383
BceAI ACGGC 1 cut(s) 155
BcgI CGANNNNNNTGC 4 cut(s) 4, 38, 232, 266
BciVI GTATCC 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 206
BfoI RGCGCY 1 cut(s) 134
BfuI GTATCC 1 cut(s) 184
BisI GCNGC 4 cut(s) 26, 168, 257, 335
BlsI GCNGC 4 cut(s) 27, 169, 258, 336
Bme18I GGWCC 1 cut(s) 265
BmeT110I CYCGRG 1 cut(s) 251
BmgBI CACGTC 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 220, 265
BmiI GGNNCC 3 cut(s) 244, 266, 267
BmsI GCATC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 389
BpmI CTGGAG 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 119
BsaAI YACGTR 1 cut(s) 361
BsaJI CCNNGG 4 cut(s) 126, 237, 250, 288
BsaWI WCCGGW 1 cut(s) 298
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 238, 252, 318
Bse118I RCCGGY 3 cut(s) 154, 181, 298
BseDI CCNNGG 4 cut(s) 126, 237, 250, 288
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 4 cut(s) 127, 238, 252, 318
BseMII CTCAG 2 cut(s) 410, 437
BseRI GAGGAG 2 cut(s) 239, 305
BseSI GKGCMC 1 cut(s) 245
BseXI GCAGC 1 cut(s) 268
BseYI CCCAGC 1 cut(s) 121
Bsh1236I CGCG 2 cut(s) 113, 324
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 1 cut(s) 221
BshNI GGYRCC 1 cut(s) 242
BshTI ACCGGT 1 cut(s) 298
BsiEI CGRYCG 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 3 cut(s) 155, 182, 299
BslFI GGGAC 2 cut(s) 127, 278
BslI CCNNNNNNNGG 4 cut(s) 127, 238, 252, 318
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 2 cut(s) 127, 278
BsnI GGCC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 245, 397
Bsp143I GATC 2 cut(s) 278, 316
BspACI CCGC 5 cut(s) 26, 168, 273, 285, 335
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 2 cut(s) 409, 436
BspFNI CGCG 2 cut(s) 113, 324
BspLI GGNNCC 3 cut(s) 244, 266, 267
BspT107I GGYRCC 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 275
BsrFI RCCGGY 3 cut(s) 154, 181, 298
BssAI RCCGGY 3 cut(s) 154, 181, 298
BssECI CCNNGG 4 cut(s) 126, 237, 250, 288
BssMI GATC 2 cut(s) 278, 316
BssT1I CCWWGG 2 cut(s) 126, 237
Bst4CI ACNGT 1 cut(s) 444
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 6 cut(s) 156, 183, 211, 406, 429, 433
BstDEI CTNAG 2 cut(s) 396, 423
BstENI CCTNNNNNAGG 1 cut(s) 236
BstF5I GGATG 1 cut(s) 394
BstFNI CGCG 2 cut(s) 113, 324
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 5 cut(s) 87, 106, 115, 133, 324
BstKTI GATC 2 cut(s) 281, 319
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 2 cut(s) 278, 316
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 5 cut(s) 25, 110, 112, 164, 401
BstSLI GKGCMC 1 cut(s) 245
BstUI CGCG 2 cut(s) 113, 324
BstV1I GCAGC 1 cut(s) 268
BstV2I GAAGAC 1 cut(s) 389
BsuI GTATCC 1 cut(s) 184
BsuRI GGCC 1 cut(s) 221
BtrI CACGTC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 394
Cac8I GCNNGC 6 cut(s) 156, 183, 211, 406, 429, 433
CfoI GCGC 5 cut(s) 87, 106, 115, 133, 324
Cfr10I RCCGGY 3 cut(s) 154, 181, 298
Cfr13I GGNCC 2 cut(s) 220, 265
CseI GACGC 2 cut(s) 42, 119
Csp6I GTAC 2 cut(s) 340, 358
CspAI ACCGGT 1 cut(s) 298
CviAII CATG 1 cut(s) 224
CviQI GTAC 2 cut(s) 340, 358
DdeI CTNAG 2 cut(s) 396, 423
DpnI GATC 2 cut(s) 280, 318
DpnII GATC 2 cut(s) 278, 316
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
EciI GGCGGA 1 cut(s) 274
Eco130I CCWWGG 2 cut(s) 126, 237
Eco24I GRGCYC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 401
Eco88I CYCGRG 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 265
EcoRI GAATTC 1 cut(s) 227
EcoT14I CCWWGG 2 cut(s) 126, 237
EcoT38I GRGCYC 1 cut(s) 397
ErhI CCWWGG 2 cut(s) 126, 237
FaeI CATG 1 cut(s) 227
FaiI YATR 1 cut(s) 225
FaqI GGGAC 2 cut(s) 127, 278
FatI CATG 1 cut(s) 223
Fnu4HI GCNGC 4 cut(s) 26, 168, 257, 335
FokI GGATG 1 cut(s) 401
FriOI GRGCYC 1 cut(s) 397
Fsp4HI GCNGC 4 cut(s) 26, 168, 257, 335
FspBI CTAG 1 cut(s) 206
GlaI GCGC 5 cut(s) 86, 105, 114, 132, 323
GluI GCNGC 4 cut(s) 26, 168, 257, 335
GsaI CCCAGC 1 cut(s) 125
GsuI CTGGAG 1 cut(s) 371
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 1 cut(s) 221
HapII CCGG 3 cut(s) 155, 182, 299
HgaI GACGC 2 cut(s) 42, 119
HhaI GCGC 5 cut(s) 87, 106, 115, 133, 324
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 5 cut(s) 85, 104, 113, 131, 322
HinP1I GCGC 5 cut(s) 85, 104, 113, 131, 322
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HpaII CCGG 3 cut(s) 155, 182, 299
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 2 cut(s) 36, 178
Hpy8I GTNNAC 1 cut(s) 415
Hpy99I CGWCG 3 cut(s) 36, 46, 113
HpyCH4III ACNGT 1 cut(s) 444
HpyCH4IV ACGT 2 cut(s) 31, 360
HpyCH4V TGCA 1 cut(s) 431
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 110, 112, 164, 401
HpyF3I CTNAG 2 cut(s) 396, 423
HpySE526I ACGT 2 cut(s) 31, 360
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 5 cut(s) 85, 104, 113, 131, 322
KflI GGGWCCC 1 cut(s) 265
KroI GCCGGC 2 cut(s) 154, 181
KroNI GCCGGC 2 cut(s) 156, 183
Kzo9I GATC 2 cut(s) 278, 316
LmnI GCTCC 2 cut(s) 76, 292
LpnPI CCDG 9 cut(s) 135, 168, 195, 195, 208, 312, 327, 335, 390
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 1 cut(s) 6
MaeI CTAG 1 cut(s) 206
MaeII ACGT 2 cut(s) 31, 360
MaeIII GTNAC 1 cut(s) 301
MalI GATC 2 cut(s) 280, 318
MbiI CCGCTC 1 cut(s) 275
MboI GATC 2 cut(s) 278, 316
MboII GAAGA 2 cut(s) 273, 394
MhlI GDGCHC 2 cut(s) 245, 397
MluCI AATT 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 14
MnlI CCTC 6 cut(s) 202, 242, 257, 260, 283, 348
MroNI GCCGGC 2 cut(s) 154, 181
MspA1I CMGCKG 1 cut(s) 259
MspI CCGG 3 cut(s) 155, 182, 299
MvnI CGCG 2 cut(s) 113, 324
MwoI GCNNNNNNNGC 5 cut(s) 25, 110, 112, 164, 401
NaeI GCCGGC 2 cut(s) 156, 183
NdeII GATC 2 cut(s) 278, 316
NgoMIV GCCGGC 2 cut(s) 154, 181
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 3 cut(s) 244, 266, 267
NmeAIII GCCGAG 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PdiI GCCGGC 2 cut(s) 156, 183
PinAI ACCGGT 1 cut(s) 298
PkrI GCNGC 4 cut(s) 27, 169, 258, 336
Ppu21I YACGTR 1 cut(s) 361
PpuMI RGGWCCY 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 265
PspFI CCCAGC 1 cut(s) 121
PspN4I GGNNCC 3 cut(s) 244, 266, 267
PspPI GGNCC 2 cut(s) 220, 265
PspPPI RGGWCCY 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 259
RsaI GTAC 2 cut(s) 341, 359
RsaNI GTAC 2 cut(s) 340, 358
SatI GCNGC 4 cut(s) 26, 168, 257, 335
Sau3AI GATC 2 cut(s) 278, 316
Sau96I GGNCC 2 cut(s) 220, 265
SduI GDGCHC 2 cut(s) 245, 397
SfaNI GCATC 1 cut(s) 6
SinI GGWCC 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 227
SsiI CCGC 5 cut(s) 26, 168, 273, 285, 335
SspMI CTAG 1 cut(s) 206
StyI CCWWGG 2 cut(s) 126, 237
TaaI ACNGT 1 cut(s) 444
TaiI ACGT 2 cut(s) 34, 363
TaqI TCGA 3 cut(s) 41, 108, 277
TasI AATT 1 cut(s) 227
TauI GCSGC 3 cut(s) 28, 170, 337
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 2 cut(s) 17, 240
TspGWI ACGGA 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 265
XagI CCTNNNNNAGG 1 cut(s) 236
XapI RAATTY 1 cut(s) 227
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.