pycom10g15550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0010790
Physical Location & Seq
Forward (+)
18791080 .. 18791511
432 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g15550.1

Sequence Viewer

Length: 432 bp
ATGAACACCAAAACGATGCGTTTGCCACCTCGTCGGATTTCGACGACCAATGCGTCAAATAATACCAACAACAACAACAAGCGCAAGGAGAAGGAGAGTGGCTTCGACGCGCTCCAGAAGACCAAGAATCTCAAGCCGGCCCCACCGCCCCAAGCCAAGCCGTCCCAGCCGGCCCCACCGACCGGACAGCTCCTGGCTGGCTATCTGGCGCACGAGTTCCTAACCAAAGGCACCCTCCTCGGGCAGCCGTGGGACCCGTCCAGAGCCGAGCCGGCTCCTTCGGGCGTCAGCGGCAGCAGCAAGATCGAAGCCGAGCCGAAGTTGGAGAACTTGGAGAGATACGTGGAAGTCGCTGATTTGCTGAAGACGGAAGGGGCCCACTTGGCTGGCATTGTGAACCCAACTCAGCTCGCTCGGATATTACAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.51

Weight (kDa)

9.74

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04000 AT5G44060
fragaria_vesca FvH4_2g20950
malus_domestica MD05G1192900.v1.1 MD10G1179300.v1.1
prunus_persica Prupe.8G219100_v2.0.a1
pyrus_communis pycom05g17980 pycom10g15550
rosa_chinensis RchiOBHm_Chr6g0287331
rosa_laevigata RLG00000012498
rosa_multiflora Rmu_co8349819.1_g000001 Rmu_sc0004701.1_g000001
rosa_roxburghii Rroxscaffold_7G00181530
rosa_rugosa Rorug06G0187100
rosa_samantha Rh6AG298500 Rh6BG304100 Rh6CG305600 Rh6CG312600 Rh6DG295900
rosa_wichuraiana Rw6G025800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AccB1I GGYRCC 1 cut(s) 230
AccII CGCG 1 cut(s) 110
AciI CCGC 2 cut(s) 146, 291
AcuI CTGAAG 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 182, 240
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 2 cut(s) 190, 409
AluI AGCT 2 cut(s) 190, 409
AlwNI CAGNNNCTG 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 3 cut(s) 138, 171, 375
ApaI GGGCCC 1 cut(s) 379
ApeKI GCWGC 3 cut(s) 244, 294, 297
AspLEI GCGC 3 cut(s) 84, 112, 211
AspS9I GGNCC 5 cut(s) 139, 172, 253, 375, 376
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 253
BaeGI GKGCMC 1 cut(s) 379
BanI GGYRCC 1 cut(s) 230
BanII GRGCYC 1 cut(s) 379
BauI CACGAG 1 cut(s) 212
BbsI GAAGAC 2 cut(s) 125, 371
BbvI GCAGC 3 cut(s) 256, 306, 309
BceAI ACGGC 2 cut(s) 145, 232
BcgI CGANNNNNNTGC 6 cut(s) 4, 38, 220, 254, 286, 320
BciT130I CCWGG 1 cut(s) 194
BglI GCCNNNNNGGC 2 cut(s) 272, 383
BisI GCNGC 4 cut(s) 245, 292, 295, 298
BlsI GCNGC 4 cut(s) 246, 293, 296, 299
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 5 cut(s) 139, 172, 253, 375, 376
BmiI GGNNCC 8 cut(s) 141, 174, 232, 254, 255, 276, 376, 377
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 6
BpiI GAAGAC 2 cut(s) 125, 371
BpmI CTGGAG 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 116
BsaAI YACGTR 1 cut(s) 343
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 238, 248
BsaWI WCCGGW 1 cut(s) 182
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 240
Bse118I RCCGGY 3 cut(s) 136, 169, 271
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 2 cut(s) 238, 248
BseLI CCNNNNNNNGG 2 cut(s) 182, 240
BseMII CTCAG 1 cut(s) 419
BseRI GAGGAG 1 cut(s) 227
BseSI GKGCMC 1 cut(s) 379
BseXI GCAGC 3 cut(s) 256, 306, 309
BseYI CCCAGC 1 cut(s) 165
Bsh1236I CGCG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 3 cut(s) 140, 173, 377
BshNI GGYRCC 1 cut(s) 230
BsiEI CGRYCG 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 4 cut(s) 137, 170, 183, 272
BslFI GGGAC 2 cut(s) 148, 266
BslI CCNNNNNNNGG 2 cut(s) 182, 240
BsmFI GGGAC 2 cut(s) 148, 266
BsnI GGCC 3 cut(s) 140, 173, 377
BsoBI CYCGRG 1 cut(s) 239
Bsp120I GGGCCC 1 cut(s) 375
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 1 cut(s) 303
BspACI CCGC 2 cut(s) 146, 291
BspANI GGCC 3 cut(s) 140, 173, 377
BspCNI CTCAG 1 cut(s) 418
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 8 cut(s) 141, 174, 232, 254, 255, 276, 376, 377
BspT107I GGYRCC 1 cut(s) 230
BsrFI RCCGGY 3 cut(s) 136, 169, 271
BssAI RCCGGY 3 cut(s) 136, 169, 271
BssECI CCNNGG 2 cut(s) 238, 248
BssMI GATC 1 cut(s) 303
BssNI GRCGYC 1 cut(s) 285
BssSI CACGAG 1 cut(s) 212
Bst2BI CACGAG 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 426
BstACI GRCGYC 1 cut(s) 285
BstBAI YACGTR 1 cut(s) 343
BstC8I GCNNGC 6 cut(s) 138, 171, 199, 273, 388, 411
BstDEI CTNAG 1 cut(s) 405
BstDSI CCRYGG 1 cut(s) 248
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 3 cut(s) 84, 112, 211
BstKTI GATC 1 cut(s) 306
BstMBI GATC 1 cut(s) 303
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 5 cut(s) 166, 272, 291, 297, 383
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 379
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 3 cut(s) 256, 306, 309
BstV2I GAAGAC 2 cut(s) 125, 371
BstXI CCANNNNNNTGG 1 cut(s) 386
BsuRI GGCC 3 cut(s) 140, 173, 377
BtgI CCRYGG 1 cut(s) 248
Cac8I GCNNGC 6 cut(s) 138, 171, 199, 273, 388, 411
CaiI CAGNNNCTG 1 cut(s) 193
CfoI GCGC 3 cut(s) 84, 112, 211
Cfr10I RCCGGY 3 cut(s) 136, 169, 271
Cfr13I GGNCC 5 cut(s) 139, 172, 253, 375, 376
CseI GACGC 3 cut(s) 42, 116, 274
DdeI CTNAG 1 cut(s) 405
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 239
EcoO109I RGGNCCY 2 cut(s) 253, 375
EcoRII CCWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 379
FaqI GGGAC 2 cut(s) 148, 266
Fnu4HI GCNGC 4 cut(s) 245, 292, 295, 298
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 4 cut(s) 245, 292, 295, 298
GlaI GCGC 3 cut(s) 83, 111, 210
GluI GCNGC 4 cut(s) 245, 292, 295, 298
GsaI CCCAGC 1 cut(s) 169
GsuI CTGGAG 1 cut(s) 98
HaeIII GGCC 3 cut(s) 140, 173, 377
HapII CCGG 4 cut(s) 137, 170, 183, 272
HgaI GACGC 3 cut(s) 42, 116, 274
HhaI GCGC 3 cut(s) 84, 112, 211
Hin1I GRCGYC 1 cut(s) 285
Hin6I GCGC 3 cut(s) 82, 110, 209
HinP1I GCGC 3 cut(s) 82, 110, 209
HinfI GANTC 1 cut(s) 127
HpaII CCGG 4 cut(s) 137, 170, 183, 272
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 2 cut(s) 36, 417
Hpy188III TCNNGA 2 cut(s) 115, 261
Hpy8I GTNNAC 1 cut(s) 397
Hpy99I CGWCG 3 cut(s) 36, 46, 110
HpyAV CCTTC 3 cut(s) 85, 288, 365
HpyCH4III ACNGT 1 cut(s) 426
HpyCH4IV ACGT 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 5 cut(s) 166, 272, 291, 297, 383
HpyF3I CTNAG 1 cut(s) 405
HpySE526I ACGT 1 cut(s) 342
Hsp92I GRCGYC 1 cut(s) 285
HspAI GCGC 3 cut(s) 82, 110, 209
KflI GGGWCCC 1 cut(s) 253
KroI GCCGGC 3 cut(s) 136, 169, 271
KroNI GCCGGC 3 cut(s) 138, 171, 273
Kzo9I GATC 1 cut(s) 303
LmnI GCTCC 3 cut(s) 117, 195, 280
Lsp1109I GCAGC 3 cut(s) 256, 306, 309
LweI GCATC 1 cut(s) 6
MaeII ACGT 1 cut(s) 342
MalI GATC 1 cut(s) 305
MboI GATC 1 cut(s) 303
MboII GAAGA 2 cut(s) 130, 376
MhlI GDGCHC 1 cut(s) 379
MmeI TCCRAC 2 cut(s) 14, 303
MnlI CCTC 3 cut(s) 39, 245, 248
MroNI GCCGGC 3 cut(s) 136, 169, 271
MspA1I CMGCKG 1 cut(s) 291
MspI CCGG 4 cut(s) 137, 170, 183, 272
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 5 cut(s) 166, 272, 291, 297, 383
NaeI GCCGGC 3 cut(s) 138, 171, 273
NdeII GATC 1 cut(s) 303
NgoMIV GCCGGC 3 cut(s) 136, 169, 271
NlaIV GGNNCC 8 cut(s) 141, 174, 232, 254, 255, 276, 376, 377
NmeAIII GCCGAG 2 cut(s) 292, 337
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PdiI GCCGGC 3 cut(s) 138, 171, 273
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 4 cut(s) 246, 293, 296, 299
Ppu21I YACGTR 1 cut(s) 343
PpuMI RGGWCCY 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 8 cut(s) 141, 174, 232, 254, 255, 276, 376, 377
PspOMI GGGCCC 1 cut(s) 375
PspPI GGNCC 5 cut(s) 139, 172, 253, 375, 376
PspPPI RGGWCCY 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 193
SatI GCNGC 4 cut(s) 245, 292, 295, 298
Sau3AI GATC 1 cut(s) 303
Sau96I GGNCC 5 cut(s) 139, 172, 253, 375, 376
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 379
SetI ASST 4 cut(s) 31, 192, 345, 411
SfaNI GCATC 1 cut(s) 6
SinI GGWCC 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SsiI CCGC 2 cut(s) 146, 291
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 426
TaiI ACGT 1 cut(s) 345
TaqI TCGA 3 cut(s) 41, 105, 306
TauI GCSGC 1 cut(s) 294
TfiI GAWTC 1 cut(s) 127
TseI GCWGC 3 cut(s) 244, 294, 297
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.