Rorug06G0187100

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001424
Physical Location & Seq
Forward (+)
29660694 .. 29665380
4687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0187100.1

Sequence Viewer

Length: 531 bp
ATGTATCACAGAGAAGGCATATGTATACCTGTTTCTTTTCTCTTTCTTTCTCTGGCGGCTTCTTCTCTCATTGAAAACGAGTATGGAAACATTGGTAAAGCATATGGGCCTGCTTCCAAAACCTACATTAATTGGGCAGCAAACATGGCTGTGTCTTTGGATACAGAGGTGCCCTGGGTCATGTGCCAGCAAGCAGATGCTCCTTCTTCAGTGATCAACACTTGCAATGGATTTTACTGTGATCAATTCACCCCAAATTCTAACAGCACACCCAAAATGTGGACCGAGAATTGGAGTGGATGTACCATGGTGGAACCAACTTTGGCCAGTCTAGTGGAGGACCTTTTATTGCTACAAGTTATGTCTGATGCTCCACTCGATGAGTATGGACTTCTTAGGCAGCCAAAATGGGGTCATCTAAAAGATGTGCATAAAGCGATAAAGCTTTGTGAAGCTGCAATGGTGGCCACTGACCCAACAGTTTCTTTTCTTGGTCAAAACATTGAGGTAGAATCCTTTACTTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008104 GO:0008150 GO:0033036 GO:0034613 GO:0051179 GO:0051641 GO:0070727 GO:0072657 GO:0072659 GO:1990778
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

176

Amino Acids

19.45

Weight (kDa)

4.53

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_35 PF01301 24 - 101 4.4e-14 Glycosyl hydrolases family 35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AccB7I CCANNNNNTGG 1 cut(s) 279
AccI GTMKAC 1 cut(s) 25
AciI CCGC 1 cut(s) 56
AcoI YGGCCR 2 cut(s) 324, 465
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 3 cut(s) 279, 291, 410
AgsI TTSAA 1 cut(s) 74
AjnI CCWGG 1 cut(s) 173
AluBI AGCT 2 cut(s) 445, 455
AluI AGCT 2 cut(s) 445, 455
AoxI GGCC 3 cut(s) 107, 324, 465
ApeKI GCWGC 3 cut(s) 137, 400, 455
ApoI RAATTY 1 cut(s) 256
AseI ATTAAT 1 cut(s) 129
AspS9I GGNCC 3 cut(s) 107, 282, 340
AsuHPI GGTGA 1 cut(s) 241
AvaII GGWCC 2 cut(s) 282, 340
BaeGI GKGCMC 1 cut(s) 174
BaeI ACNNNNGTAYC 2 cut(s) 153, 186
BalI TGGCCA 2 cut(s) 326, 467
BanI GGYRCC 1 cut(s) 169
BbvI GCAGC 3 cut(s) 149, 412, 442
BciT130I CCWGG 1 cut(s) 175
BciVI GTATCC 1 cut(s) 154
BclI TGATCA 2 cut(s) 213, 241
BfaI CTAG 1 cut(s) 332
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 4 cut(s) 57, 138, 401, 456
BlsI GCNGC 4 cut(s) 58, 139, 402, 457
Bme1390I CCNGG 1 cut(s) 175
Bme18I GGWCC 2 cut(s) 282, 340
BmgT120I GGNCC 3 cut(s) 107, 282, 340
BmiI GGNNCC 2 cut(s) 171, 315
BmrFI CCNGG 1 cut(s) 175
BmsI GCATC 2 cut(s) 187, 358
BsaJI CCNNGG 3 cut(s) 173, 174, 306
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 3 cut(s) 279, 291, 410
Bse1I ACTGG 1 cut(s) 327
Bse3DI GCAATG 2 cut(s) 232, 465
BseBI CCWGG 1 cut(s) 175
BseDI CCNNGG 3 cut(s) 173, 174, 306
BseGI GGATG 1 cut(s) 305
BseLI CCNNNNNNNGG 3 cut(s) 279, 291, 410
BseMI GCAATG 2 cut(s) 232, 465
BseNI ACTGG 1 cut(s) 327
BseSI GKGCMC 1 cut(s) 174
BseXI GCAGC 3 cut(s) 149, 412, 442
BshFI GGCC 3 cut(s) 109, 326, 467
BshNI GGYRCC 1 cut(s) 169
BslI CCNNNNNNNGG 3 cut(s) 279, 291, 410
BsnI GGCC 3 cut(s) 109, 326, 467
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 2 cut(s) 213, 241
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 1 cut(s) 56
BspANI GGCC 3 cut(s) 109, 326, 467
BspLI GGNNCC 2 cut(s) 171, 315
BspT107I GGYRCC 1 cut(s) 169
BsrDI GCAATG 2 cut(s) 232, 465
BsrI ACTGG 1 cut(s) 327
BssECI CCNNGG 3 cut(s) 173, 174, 306
BssMI GATC 2 cut(s) 213, 241
BssNAI GTATAC 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 306
Bst1107I GTATAC 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 175
Bst4CI ACNGT 2 cut(s) 239, 481
BstC8I GCNNGC 3 cut(s) 111, 188, 192
BstDEI CTNAG 1 cut(s) 395
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 305
BstKTI GATC 2 cut(s) 216, 244
BstMBI GATC 2 cut(s) 213, 241
BstMWI GCNNNNNNNGC 2 cut(s) 146, 464
BstNI CCWGG 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 173
BstSLI GKGCMC 1 cut(s) 174
BstV1I GCAGC 3 cut(s) 149, 412, 442
BstXI CCANNNNNNTGG 1 cut(s) 334
BstZ17I GTATAC 1 cut(s) 26
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 3 cut(s) 109, 326, 467
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 305
BtsIMutI CAGTG 2 cut(s) 216, 468
Cac8I GCNNGC 3 cut(s) 111, 188, 192
Cfr13I GGNCC 3 cut(s) 107, 282, 340
Csp6I GTAC 1 cut(s) 303
CviAII CATG 3 cut(s) 145, 181, 307
CviJI RGCY 8 cut(s) 59, 109, 149, 326, 403, 445, 455, 467
CviKI_1 RGCY 8 cut(s) 59, 109, 149, 326, 403, 445, 455, 467
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 1 cut(s) 395
DpnI GATC 2 cut(s) 215, 243
DpnII GATC 2 cut(s) 213, 241
EaeI YGGCCR 2 cut(s) 324, 465
Eco130I CCWWGG 1 cut(s) 306
Eco47I GGWCC 2 cut(s) 282, 340
Eco57I CTGAAG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 148, 184, 310
FatI CATG 3 cut(s) 144, 180, 306
FauNDI CATATG 2 cut(s) 20, 103
FbaI TGATCA 2 cut(s) 213, 241
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 4 cut(s) 57, 138, 401, 456
FokI GGATG 1 cut(s) 312
Fsp4HI GCNGC 4 cut(s) 57, 138, 401, 456
FspBI CTAG 1 cut(s) 332
GluI GCNGC 4 cut(s) 57, 138, 401, 456
HaeIII GGCC 3 cut(s) 109, 326, 467
Hin1II CATG 3 cut(s) 148, 184, 310
HindIII AAGCTT 1 cut(s) 443
HinfI GANTC 1 cut(s) 512
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 26, 282
Hpy188I TCNGA 1 cut(s) 367
Hpy8I GTNNAC 2 cut(s) 26, 282
HpyAV CCTTC 2 cut(s) 8, 213
HpyCH4III ACNGT 2 cut(s) 239, 481
HpyCH4V TGCA 3 cut(s) 225, 430, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 464
HpyF3I CTNAG 1 cut(s) 395
Hsp92II CATG 3 cut(s) 148, 184, 310
Ksp22I TGATCA 2 cut(s) 213, 241
Kzo9I GATC 2 cut(s) 213, 241
LmnI GCTCC 2 cut(s) 205, 376
LpnPI CCDG 7 cut(s) 38, 42, 123, 160, 187, 200, 340
Lsp1109I GCAGC 3 cut(s) 149, 412, 442
LweI GCATC 2 cut(s) 187, 358
MaeI CTAG 1 cut(s) 332
MalI GATC 2 cut(s) 215, 243
MboI GATC 2 cut(s) 213, 241
MboII GAAGA 2 cut(s) 54, 198
MhlI GDGCHC 1 cut(s) 174
MlsI TGGCCA 2 cut(s) 326, 467
MluCI AATT 4 cut(s) 130, 245, 256, 289
MluNI TGGCCA 2 cut(s) 326, 467
MnlI CCTC 3 cut(s) 160, 331, 499
Mox20I TGGCCA 2 cut(s) 326, 467
MscI TGGCCA 2 cut(s) 326, 467
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 149
Msp20I TGGCCA 2 cut(s) 326, 467
MspR9I CCNGG 1 cut(s) 175
MvaI CCWGG 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 146, 464
NcoI CCATGG 1 cut(s) 306
NdeI CATATG 2 cut(s) 20, 103
NdeII GATC 2 cut(s) 213, 241
NlaIII CATG 3 cut(s) 148, 184, 310
NlaIV GGNNCC 2 cut(s) 171, 315
PasI CCCWGGG 1 cut(s) 174
PfeI GAWTC 1 cut(s) 512
PflMI CCANNNNNTGG 1 cut(s) 279
PkrI GCNGC 4 cut(s) 58, 139, 402, 457
PpuMI RGGWCCY 1 cut(s) 340
PshBI ATTAAT 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 171, 315
PspPI GGNCC 3 cut(s) 107, 282, 340
PspPPI RGGWCCY 1 cut(s) 340
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 4 cut(s) 57, 138, 401, 456
Sau3AI GATC 2 cut(s) 213, 241
Sau96I GGNCC 3 cut(s) 107, 282, 340
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 1 cut(s) 174
SetI ASST 7 cut(s) 31, 125, 171, 345, 447, 457, 510
SfaNI GCATC 2 cut(s) 187, 358
SinI GGWCC 2 cut(s) 282, 340
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 4 cut(s) 130, 245, 256, 289
SsiI CCGC 1 cut(s) 56
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 173
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 239, 481
TaqI TCGA 1 cut(s) 378
TaqII GACCGA 1 cut(s) 299
TasI AATT 4 cut(s) 130, 245, 256, 289
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 2 cut(s) 216, 475
TseI GCWGC 3 cut(s) 137, 400, 455
TspRI CASTG 2 cut(s) 216, 475
Van91I CCANNNNNTGG 1 cut(s) 279
VpaK11BI GGWCC 2 cut(s) 282, 340
VspI ATTAAT 1 cut(s) 129
XapI RAATTY 1 cut(s) 256
XmiI GTMKAC 1 cut(s) 25
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.