tetratricopeptide repeat protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1046 |
| Acc36I | ACCTGC | 1 cut(s) | 1046 |
| AccB1I | GGYRCC | 1 cut(s) | 2126 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 203 |
| AccBSI | CCGCTC | 2 cut(s) | 394, 807 |
| AccI | GTMKAC | 1 cut(s) | 1791 |
| AccII | CGCG | 1 cut(s) | 46 |
| AciI | CCGC | 9 cut(s) | 46, 394, 428, 668, 805, 1248, 1251, 1295, 2153 |
| AclWI | GGATC | 9 cut(s) | 153, 504, 905, 918, 933, 1017, 1106, 1119, 1578 |
| AcsI | RAATTY | 2 cut(s) | 900, 1741 |
| AcuI | CTGAAG | 4 cut(s) | 102, 804, 1322, 2191 |
| AfaI | GTAC | 5 cut(s) | 151, 831, 1246, 1968, 2030 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 203, 693 |
| AflIII | ACRYGT | 1 cut(s) | 322 |
| AgsI | TTSAA | 9 cut(s) | 253, 332, 554, 986, 1147, 1240, 1625, 2183, 2201 |
| AjnI | CCWGG | 5 cut(s) | 531, 962, 997, 1344, 2121 |
| AleI | CACNNNNGTG | 1 cut(s) | 1886 |
| Alw21I | GWGCWC | 1 cut(s) | 523 |
| AlwI | GGATC | 9 cut(s) | 153, 504, 905, 918, 933, 1017, 1106, 1119, 1578 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1345 |
| Ama87I | CYCGRG | 1 cut(s) | 171 |
| AoxI | GGCC | 3 cut(s) | 1341, 1906, 2104 |
| ApeKI | GCWGC | 7 cut(s) | 98, 314, 347, 1436, 1562, 2150, 2168 |
| ApoI | RAATTY | 2 cut(s) | 900, 1741 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 809, 841 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 111, 1744 |
| AspS9I | GGNCC | 2 cut(s) | 1342, 1906 |
| AsuHPI | GGTGA | 4 cut(s) | 401, 1070, 1607, 2021 |
| AvaI | CYCGRG | 1 cut(s) | 171 |
| BaeGI | GKGCMC | 1 cut(s) | 2129 |
| BamHI | GGATCC | 2 cut(s) | 910, 1111 |
| BanI | GGYRCC | 1 cut(s) | 2126 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 303, 335, 441, 473, 978, 1010 |
| BbsI | GAAGAC | 1 cut(s) | 156 |
| Bbv12I | GWGCWC | 1 cut(s) | 523 |
| BbvCI | CCTCAGC | 1 cut(s) | 1329 |
| BbvI | GCAGC | 7 cut(s) | 110, 301, 334, 1423, 1549, 2137, 2155 |
| BccI | CCATC | 5 cut(s) | 714, 922, 1214, 1404, 2140 |
| BceAI | ACGGC | 2 cut(s) | 586, 2018 |
| BciT130I | CCWGG | 5 cut(s) | 533, 964, 999, 1346, 2123 |
| BciVI | GTATCC | 1 cut(s) | 952 |
| BclI | TGATCA | 1 cut(s) | 1231 |
| BfaI | CTAG | 3 cut(s) | 975, 1034, 1406 |
| BfmI | CTRYAG | 2 cut(s) | 1983, 2169 |
| BfuAI | ACCTGC | 1 cut(s) | 1046 |
| BfuI | GTATCC | 1 cut(s) | 952 |
| BisI | GCNGC | 9 cut(s) | 99, 315, 348, 395, 1251, 1437, 1563, 2151, 2169 |
| BlpI | GCTNAGC | 2 cut(s) | 1416, 1452 |
| BlsI | GCNGC | 9 cut(s) | 100, 316, 349, 396, 1252, 1438, 1564, 2152, 2170 |
| Bme1390I | CCNGG | 5 cut(s) | 533, 964, 999, 1346, 2123 |
| BmeT110I | CYCGRG | 1 cut(s) | 171 |
| BmgT120I | GGNCC | 2 cut(s) | 1342, 1906 |
| BmiI | GGNNCC | 5 cut(s) | 114, 716, 912, 1113, 2128 |
| BmrFI | CCNGG | 5 cut(s) | 533, 964, 999, 1346, 2123 |
| BmrI | ACTGGG | 1 cut(s) | 1161 |
| BmsI | GCATC | 4 cut(s) | 236, 1423, 1531, 1807 |
| BmuI | ACTGGG | 1 cut(s) | 1161 |
| BpiI | GAAGAC | 1 cut(s) | 156 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 394, 426 |
| BpmI | CTGGAG | 1 cut(s) | 102 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1329 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1416, 1452 |
| BpuEI | CTTGAG | 1 cut(s) | 740 |
| BsaJI | CCNNGG | 7 cut(s) | 141, 963, 998, 1344, 2101, 2121, 2122 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 19, 49, 791, 821 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 203, 693 |
| Bse1I | ACTGG | 2 cut(s) | 208, 1167 |
| Bse3DI | GCAATG | 2 cut(s) | 488, 1653 |
| BseBI | CCWGG | 5 cut(s) | 533, 964, 999, 1346, 2123 |
| BseDI | CCNNGG | 7 cut(s) | 141, 963, 998, 1344, 2101, 2121, 2122 |
| BseGI | GGATG | 5 cut(s) | 251, 550, 1225, 1438, 1546 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 203, 693 |
| BseMI | GCAATG | 2 cut(s) | 488, 1653 |
| BseMII | CTCAG | 9 cut(s) | 213, 1076, 1320, 1407, 1414, 1538, 1595, 1812, 2011 |
| BseNI | ACTGG | 2 cut(s) | 208, 1167 |
| BseRI | GAGGAG | 4 cut(s) | 19, 22, 43, 1102 |
| BseSI | GKGCMC | 1 cut(s) | 2129 |
| BseXI | GCAGC | 7 cut(s) | 110, 301, 334, 1423, 1549, 2137, 2155 |
| BseYI | CCCAGC | 1 cut(s) | 1355 |
| BsgI | GTGCAG | 2 cut(s) | 1422, 1614 |
| Bsh1236I | CGCG | 1 cut(s) | 46 |
| BshFI | GGCC | 3 cut(s) | 1343, 1908, 2106 |
| BshNI | GGYRCC | 1 cut(s) | 2126 |
| BsiHKAI | GWGCWC | 1 cut(s) | 523 |
| BsiHKCI | CYCGRG | 1 cut(s) | 171 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 203, 693 |
| BsmI | GAATGC | 4 cut(s) | 1063, 1282, 2062, 2162 |
| BsnI | GGCC | 3 cut(s) | 1343, 1908, 2106 |
| BsoBI | CYCGRG | 1 cut(s) | 171 |
| Bsp1286I | GDGCHC | 2 cut(s) | 523, 2129 |
| Bsp1407I | TGTACA | 1 cut(s) | 2028 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1416, 1452 |
| BspACI | CCGC | 9 cut(s) | 46, 394, 428, 668, 805, 1248, 1251, 1295, 2153 |
| BspANI | GGCC | 3 cut(s) | 1343, 1908, 2106 |
| BspCNI | CTCAG | 9 cut(s) | 214, 1077, 1321, 1408, 1413, 1537, 1596, 1813, 2010 |
| BspFNI | CGCG | 1 cut(s) | 46 |
| BspLI | GGNNCC | 5 cut(s) | 114, 716, 912, 1113, 2128 |
| BspMAI | CTGCAG | 1 cut(s) | 2173 |
| BspMI | ACCTGC | 1 cut(s) | 1046 |
| BspPI | GGATC | 9 cut(s) | 153, 504, 905, 918, 933, 1017, 1106, 1119, 1578 |
| BspT107I | GGYRCC | 1 cut(s) | 2126 |
| BsrBI | CCGCTC | 2 cut(s) | 394, 807 |
| BsrDI | GCAATG | 2 cut(s) | 488, 1653 |
| BsrGI | TGTACA | 1 cut(s) | 2028 |
| BsrI | ACTGG | 2 cut(s) | 208, 1167 |
| BssECI | CCNNGG | 7 cut(s) | 141, 963, 998, 1344, 2101, 2121, 2122 |
| BssT1I | CCWWGG | 2 cut(s) | 141, 2101 |
| Bst2UI | CCWGG | 5 cut(s) | 533, 964, 999, 1346, 2123 |
| Bst4CI | ACNGT | 6 cut(s) | 599, 821, 842, 1518, 1533, 2035 |
| Bst6I | CTCTTC | 2 cut(s) | 843, 2178 |
| BstAUI | TGTACA | 1 cut(s) | 2028 |
| BstC8I | GCNNGC | 2 cut(s) | 575, 790 |
| BstF5I | GGATG | 5 cut(s) | 251, 550, 1225, 1438, 1546 |
| BstFNI | CGCG | 1 cut(s) | 46 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 403, 1202, 1340, 1853, 1862, 1928 |
| BstNI | CCWGG | 5 cut(s) | 533, 964, 999, 1346, 2123 |
| BstNSI | RCATGY | 1 cut(s) | 326 |
| BstSCI | CCNGG | 5 cut(s) | 531, 962, 997, 1344, 2121 |
| BstSFI | CTRYAG | 2 cut(s) | 1983, 2169 |
| BstSLI | GKGCMC | 1 cut(s) | 2129 |
| BstUI | CGCG | 1 cut(s) | 46 |
| BstV1I | GCAGC | 7 cut(s) | 110, 301, 334, 1423, 1549, 2137, 2155 |
| BstV2I | GAAGAC | 1 cut(s) | 156 |
| BstX2I | RGATCY | 3 cut(s) | 496, 910, 1111 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 648 |
| BstYI | RGATCY | 3 cut(s) | 496, 910, 1111 |
| BsuI | GTATCC | 1 cut(s) | 952 |
| BsuRI | GGCC | 3 cut(s) | 1343, 1908, 2106 |
| BtsCI | GGATG | 5 cut(s) | 251, 550, 1225, 1438, 1546 |
| BtsIMutI | CAGTG | 4 cut(s) | 201, 911, 1284, 2031 |
| BveI | ACCTGC | 1 cut(s) | 1046 |
| Cac8I | GCNNGC | 2 cut(s) | 575, 790 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1345 |
| Cfr13I | GGNCC | 2 cut(s) | 1342, 1906 |
| Csp6I | GTAC | 5 cut(s) | 150, 830, 1245, 1967, 2029 |
| CviAII | CATG | 9 cut(s) | 323, 671, 1172, 1207, 1688, 1775, 1877, 1964, 2091 |
| CviQI | GTAC | 5 cut(s) | 150, 830, 1245, 1967, 2029 |
| DraI | TTTAAA | 3 cut(s) | 511, 1077, 1645 |
| Eam1104I | CTCTTC | 2 cut(s) | 843, 2178 |
| EarI | CTCTTC | 2 cut(s) | 843, 2178 |
| Eco130I | CCWWGG | 2 cut(s) | 141, 2101 |
| Eco57I | CTGAAG | 4 cut(s) | 102, 804, 1322, 2191 |
| Eco88I | CYCGRG | 1 cut(s) | 171 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1342, 1906 |
| EcoRI | GAATTC | 1 cut(s) | 900 |
| EcoRII | CCWGG | 5 cut(s) | 531, 962, 997, 1344, 2121 |
| EcoT14I | CCWWGG | 2 cut(s) | 141, 2101 |
| EcoT22I | ATGCAT | 1 cut(s) | 2062 |
| ErhI | CCWWGG | 2 cut(s) | 141, 2101 |
| FaeI | CATG | 9 cut(s) | 326, 674, 1175, 1210, 1691, 1778, 1880, 1967, 2094 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 148, 180, 456, 488, 876, 908, 1605, 1637 |
| FatI | CATG | 9 cut(s) | 322, 670, 1171, 1206, 1687, 1774, 1876, 1963, 2090 |
| FauI | CCCGC | 1 cut(s) | 435 |
| FauNDI | CATATG | 1 cut(s) | 1786 |
| FbaI | TGATCA | 1 cut(s) | 1231 |
| FblI | GTMKAC | 1 cut(s) | 1791 |
| Fnu4HI | GCNGC | 9 cut(s) | 99, 315, 348, 395, 1251, 1437, 1563, 2151, 2169 |
| FokI | GGATG | 5 cut(s) | 258, 557, 1232, 1445, 1553 |
| Fsp4HI | GCNGC | 9 cut(s) | 99, 315, 348, 395, 1251, 1437, 1563, 2151, 2169 |
| FspBI | CTAG | 3 cut(s) | 975, 1034, 1406 |
| GluI | GCNGC | 9 cut(s) | 99, 315, 348, 395, 1251, 1437, 1563, 2151, 2169 |
| GsaI | CCCAGC | 1 cut(s) | 1359 |
| GsuI | CTGGAG | 1 cut(s) | 102 |
| HaeIII | GGCC | 3 cut(s) | 1343, 1908, 2106 |
| Hin1II | CATG | 9 cut(s) | 326, 674, 1175, 1210, 1691, 1778, 1880, 1967, 2094 |
| HindIII | AAGCTT | 3 cut(s) | 1721, 1941, 2044 |
| HinfI | GANTC | 9 cut(s) | 128, 161, 224, 355, 554, 742, 871, 2117, 2186 |
| HphI | GGTGA | 4 cut(s) | 401, 1070, 1607, 2021 |
| Hpy166II | GTNNAC | 2 cut(s) | 1792, 2031 |
| Hpy188III | TCNNGA | 8 cut(s) | 81, 171, 461, 542, 1406, 1749, 2069, 2180 |
| Hpy8I | GTNNAC | 2 cut(s) | 1792, 2031 |
| Hpy99I | CGWCG | 1 cut(s) | 696 |
| HpyAV | CCTTC | 9 cut(s) | 126, 326, 509, 742, 1175, 1466, 1746, 1897, 1968 |
| HpyCH4III | ACNGT | 6 cut(s) | 599, 821, 842, 1518, 1533, 2035 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 403, 1202, 1340, 1853, 1862, 1928 |
| Hsp92II | CATG | 9 cut(s) | 326, 674, 1175, 1210, 1691, 1778, 1880, 1967, 2094 |
| Ksp22I | TGATCA | 1 cut(s) | 1231 |
| LmnI | GCTCC | 5 cut(s) | 642, 779, 812, 1052, 2197 |
| Lsp1109I | GCAGC | 7 cut(s) | 110, 301, 334, 1423, 1549, 2137, 2155 |
| LweI | GCATC | 4 cut(s) | 236, 1423, 1531, 1807 |
| MaeI | CTAG | 3 cut(s) | 975, 1034, 1406 |
| MaeIII | GTNAC | 4 cut(s) | 184, 448, 993, 1376 |
| MbiI | CCGCTC | 2 cut(s) | 394, 807 |
| MflI | RGATCY | 3 cut(s) | 496, 910, 1111 |
| MhlI | GDGCHC | 2 cut(s) | 523, 2129 |
| MluCI | AATT | 8 cut(s) | 89, 602, 644, 900, 989, 1598, 1741, 1760 |
| MlyI | GAGTC | 4 cut(s) | 170, 233, 349, 2195 |
| MmeI | TCCRAC | 2 cut(s) | 1410, 1737 |
| Mph1103I | ATGCAT | 1 cut(s) | 2062 |
| MroXI | GAANNNNTTC | 2 cut(s) | 111, 1744 |
| MseI | TTAA | 9 cut(s) | 92, 510, 894, 1076, 1463, 1488, 1644, 1976, 2063 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1886 |
| MspA1I | CMGCKG | 2 cut(s) | 1295, 1988 |
| MspR9I | CCNGG | 5 cut(s) | 533, 964, 999, 1346, 2123 |
| Mva1269I | GAATGC | 4 cut(s) | 1063, 1282, 2062, 2162 |
| MvaI | CCWGG | 5 cut(s) | 533, 964, 999, 1346, 2123 |
| MvnI | CGCG | 1 cut(s) | 46 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 403, 1202, 1340, 1853, 1862, 1928 |
| NdeI | CATATG | 1 cut(s) | 1786 |
| NlaIII | CATG | 9 cut(s) | 326, 674, 1175, 1210, 1691, 1778, 1880, 1967, 2094 |
| NlaIV | GGNNCC | 5 cut(s) | 114, 716, 912, 1113, 2128 |
| NmuCI | GTSAC | 1 cut(s) | 1376 |
| NsiI | ATGCAT | 1 cut(s) | 2062 |
| NspI | RCATGY | 1 cut(s) | 326 |
| OliI | CACNNNNGTG | 1 cut(s) | 1886 |
| PaeR7I | CTCGAG | 1 cut(s) | 171 |
| PaqCI | CACCTGC | 1 cut(s) | 1046 |
| PasI | CCCWGGG | 1 cut(s) | 2122 |
| PciI | ACATGT | 1 cut(s) | 322 |
| PctI | GAATGC | 4 cut(s) | 1063, 1282, 2062, 2162 |
| PdmI | GAANNNNTTC | 2 cut(s) | 111, 1744 |
| PfeI | GAWTC | 5 cut(s) | 128, 554, 742, 871, 2117 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 203 |
| PkrI | GCNGC | 9 cut(s) | 100, 316, 349, 396, 1252, 1438, 1564, 2152, 2170 |
| PleI | GAGTC | 4 cut(s) | 169, 232, 349, 2194 |
| PpsI | GAGTC | 4 cut(s) | 169, 232, 349, 2194 |
| PscI | ACATGT | 1 cut(s) | 322 |
| Psp6I | CCWGG | 5 cut(s) | 531, 962, 997, 1344, 2121 |
| PspFI | CCCAGC | 1 cut(s) | 1355 |
| PspGI | CCWGG | 5 cut(s) | 531, 962, 997, 1344, 2121 |
| PspN4I | GGNNCC | 5 cut(s) | 114, 716, 912, 1113, 2128 |
| PspPI | GGNCC | 2 cut(s) | 1342, 1906 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 391, 423 |
| PstI | CTGCAG | 1 cut(s) | 2173 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1345 |
| PsuI | RGATCY | 3 cut(s) | 496, 910, 1111 |
| PvuII | CAGCTG | 1 cut(s) | 1988 |
| RsaI | GTAC | 5 cut(s) | 151, 831, 1246, 1968, 2030 |
| RsaNI | GTAC | 5 cut(s) | 150, 830, 1245, 1967, 2029 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1886 |
| SaqAI | TTAA | 9 cut(s) | 92, 510, 894, 1076, 1463, 1488, 1644, 1976, 2063 |
| SatI | GCNGC | 9 cut(s) | 99, 315, 348, 395, 1251, 1437, 1563, 2151, 2169 |
| Sau96I | GGNCC | 2 cut(s) | 1342, 1906 |
| SchI | GAGTC | 4 cut(s) | 170, 233, 349, 2195 |
| ScrFI | CCNGG | 5 cut(s) | 533, 964, 999, 1346, 2123 |
| SduI | GDGCHC | 2 cut(s) | 523, 2129 |
| SfaNI | GCATC | 4 cut(s) | 236, 1423, 1531, 1807 |
| SfcI | CTRYAG | 2 cut(s) | 1983, 2169 |
| Sfr274I | CTCGAG | 1 cut(s) | 171 |
| SlaI | CTCGAG | 1 cut(s) | 171 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1886 |
| SmlI | CTYRAG | 2 cut(s) | 171, 719 |
| SmoI | CTYRAG | 2 cut(s) | 171, 719 |
| Sse9I | AATT | 8 cut(s) | 89, 602, 644, 900, 989, 1598, 1741, 1760 |
| SsiI | CCGC | 9 cut(s) | 46, 394, 428, 668, 805, 1248, 1251, 1295, 2153 |
| SspI | AATATT | 2 cut(s) | 1023, 1486 |
| SspMI | CTAG | 3 cut(s) | 975, 1034, 1406 |
| StyD4I | CCNGG | 5 cut(s) | 531, 962, 997, 1344, 2121 |
| StyI | CCWWGG | 2 cut(s) | 141, 2101 |
| TaaI | ACNGT | 6 cut(s) | 599, 821, 842, 1518, 1533, 2035 |
| TaqI | TCGA | 2 cut(s) | 172, 180 |
| TasI | AATT | 8 cut(s) | 89, 602, 644, 900, 989, 1598, 1741, 1760 |
| TatI | WGTACW | 1 cut(s) | 2028 |
| TauI | GCSGC | 2 cut(s) | 397, 1253 |
| TfiI | GAWTC | 5 cut(s) | 128, 554, 742, 871, 2117 |
| Tru1I | TTAA | 9 cut(s) | 92, 510, 894, 1076, 1463, 1488, 1644, 1976, 2063 |
| Tru9I | TTAA | 9 cut(s) | 92, 510, 894, 1076, 1463, 1488, 1644, 1976, 2063 |
| TscAI | CASTG | 4 cut(s) | 208, 911, 1284, 2038 |
| TseFI | GTSAC | 1 cut(s) | 1376 |
| TseI | GCWGC | 7 cut(s) | 98, 314, 347, 1436, 1562, 2150, 2168 |
| Tsp45I | GTSAC | 1 cut(s) | 1376 |
| TspGWI | ACGGA | 1 cut(s) | 1065 |
| TspRI | CASTG | 4 cut(s) | 208, 911, 1284, 2038 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 203 |
| XapI | RAATTY | 2 cut(s) | 900, 1741 |
| XbaI | TCTAGA | 1 cut(s) | 1405 |
| XceI | RCATGY | 1 cut(s) | 326 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1213 |
| XhoI | CTCGAG | 1 cut(s) | 171 |
| XmiI | GTMKAC | 1 cut(s) | 1791 |
| XmnI | GAANNNNTTC | 2 cut(s) | 111, 1744 |
| XspI | CTAG | 3 cut(s) | 975, 1034, 1406 |
| Zsp2I | ATGCAT | 1 cut(s) | 2062 |