pycom10g15540

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0001424
Physical Location & Seq
Reverse (-)
18781892 .. 18783944
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g15540.1

Sequence Viewer

Length: 1611 bp
ATGAGGAGTAGTAGTGAAACAAGGAGGAGGGGTAAACCTTCGTGGGAATTTGGAAAGGTAATGAAGTGTTTCCGTTCGGGAGAGCAATTAAGAGCGGCTGATGAAATGGTTCCTTCAGAAAATGAATCCCTGGCAACCAAGGATGATAAATTACATGAGTCTTCGTTGCGAGCTGGGGAGGCTACAAAGAAACCGCATGCTGGCAATATAGAAGAAGCTGAATTATCTCTGCGTGAGAGTGGTTGTTTGAACTATGAGGAAGCAAGAGCGCTATTAGGAAGATACGAATACCAGAAAGGAAACATAGAAGCTGCTTTACATGTATTTGAAGGAATAGATATTGGTGCATTGACTCCGAAGATAAAAATCACCCTTGCCAGAGGAGGTGAGCGTCGTAAAAGGCGCTCTCAAAGTTTTTCTACGCCGCCACTGTCTATGAATGCTGTCACTTTACTTCTGGAAGCAATATTTCTCAAAGCAAAATCATTGGAAGCTCTTGGGAGGTTTAAAGAAGCTGCTCAGTCTTGCAAAGTTGTTCTGGACATTGTTGAATCTTCATTTCCAGATGGCTTGCCTCAAAACTTTGGCGCTGACTGTAAATTGCAGGAGATTATAAGCAAGAGTGTCGAGTTGCTCCCAGAATTGTGGAAATTGTCTGATTGTCCGCATGAAGCTATCTTGTCTTACCGACAGGCTCTACTCCATCACTGGAACCTTGAGGTAGAAACTACTGCAAAGATTCAGAAGGACTTTGCTGTTTTGCTTCTGTATAGTGGGTGTGAAGGAAGCCCCCCAAACCTACGCTTCCAAATAGACAGTTCATTTGTACCCAAAAACAGTTTAGAAGAAGCTATTCTTCTGCTAATGATACTACTTAGAAAAGCTTCTCTTCGAAGAATTCAGTGGGATCCATCAATCTTGGACCATCTTTCTTTTGCTCTGTCTGTAGCAGGGGATACCATGGCTTTAGCTAATCAAGTTGAAGAACTGCTCCCTGGGTTTATGGATCGGAAAGAAATATTTTACAAACTAGCTCTCTGCTACTATGGAGCAGGCGAGGATTCAGTTGCCTTAGGTCTACTGAGGAAATTGTTGAGTAAGAGCGAGGATCCAATGTGTTTTCCAGCTTTGTTATTGGCATCGAAGATATGTGGGGAAAATCCCAGTCCCAGTCATGCAGAAGAAGGGGTAGGATTTGCTCGCAGAGCCCTTGAAAGTTTGGATGGTAAATGCGATCATTTGAAAAGTACCGCCACTTGTTTGTTGGGTATATCACTTTCTGTGCATTCTAAATCAGCAGTTGCTGATTTTGAGAGAGTGACAAGACAGGATGAGGCACTTCAGGCCTTGGAAACTGCTGGGAGAATGACAACAATGAGTGACCCTTTTGCTCTTTACCATCTCAGCCTAGAATATGCTGAGCAGAGAAAGTTGGATGCTGCACTTGATTGTGCAAAGAAAATGCTAAAGCTGGAAGGTGGTTGTAATATTAAGGGTTGGTTGTTGTTGAGCAGAATACTATCAGCTCAGAAACGGTTTGTGGATGCTGAAACGATCGATCAGAGGCTGCGTTCGATCAGACAGGGAAATGGGAACAAGGAGAACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008104 GO:0008150 GO:0033036 GO:0034613 GO:0051179 GO:0051641 GO:0070727 GO:0072657 GO:0072659 GO:1990778
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

537

Amino Acids

59.6

Weight (kDa)

6.63

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 614
AccBSI CCGCTC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 1078
AciI CCGC 5 cut(s) 95, 194, 425, 665, 1251
AclWI GGATC 5 cut(s) 902, 915, 1014, 1103, 1116
AcsI RAATTY 2 cut(s) 47, 897
AcuI CTGAAG 2 cut(s) 99, 1325
AfaI GTAC 2 cut(s) 828, 1249
AfeI AGCGCT 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 6 cut(s) 250, 329, 551, 983, 1214, 1243
AjnI CCWGG 2 cut(s) 129, 994
AlwI GGATC 5 cut(s) 902, 915, 1014, 1103, 1116
AlwNI CAGNNNCTG 2 cut(s) 1304, 1567
Aor51HI AGCGCT 1 cut(s) 270
AoxI GGCC 1 cut(s) 1344
ApeKI GCWGC 4 cut(s) 311, 515, 1439, 1567
ApoI RAATTY 2 cut(s) 47, 897
ArsI GACNNNNNNTTYG 2 cut(s) 806, 838
Asp700I GAANNNNTTC 4 cut(s) 68, 108, 852, 883
AspLEI GCGC 3 cut(s) 271, 405, 590
AspS9I GGNCC 1 cut(s) 922
AsuHPI GGTGA 2 cut(s) 361, 398
AsuII TTCGAA 1 cut(s) 892
AvaII GGWCC 1 cut(s) 922
AxyI CCTNAGG 1 cut(s) 1072
BamHI GGATCC 2 cut(s) 907, 1108
BanII GRGCYC 1 cut(s) 1210
BarI GAAGNNNNNNTAC 2 cut(s) 300, 332
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 4 cut(s) 298, 502, 1426, 1554
BccI CCATC 6 cut(s) 560, 711, 919, 933, 1217, 1407
BcgI CGANNNNNNTGC 2 cut(s) 607, 641
BciT130I CCWGG 2 cut(s) 131, 996
BciVI GTATCC 1 cut(s) 949
BfaI CTAG 2 cut(s) 1031, 1409
BfmI CTRYAG 1 cut(s) 945
BfoI RGCGCY 3 cut(s) 272, 406, 591
BfuI GTATCC 1 cut(s) 949
BisI GCNGC 6 cut(s) 96, 312, 425, 516, 1440, 1568
BlpI GCTNAGC 1 cut(s) 1419
BlsI GCNGC 6 cut(s) 97, 313, 426, 517, 1441, 1569
Bme1390I CCNGG 2 cut(s) 131, 996
Bme18I GGWCC 1 cut(s) 922
BmgT120I GGNCC 1 cut(s) 922
BmiI GGNNCC 4 cut(s) 111, 713, 909, 1110
BmrFI CCNGG 2 cut(s) 131, 996
BmrI ACTGGG 2 cut(s) 1158, 1164
BmsI GCATC 3 cut(s) 1148, 1426, 1534
BmuI ACTGGG 2 cut(s) 1158, 1164
BpiI GAAGAC 1 cut(s) 153
Bpu1102I GCTNAGC 1 cut(s) 1419
Bpu14I TTCGAA 1 cut(s) 892
BpuEI CTTGAG 1 cut(s) 737
Bsa29I ATCGAT 1 cut(s) 1557
BsaBI GATNNNNATC 1 cut(s) 365
BsaJI CCNNGG 6 cut(s) 129, 138, 960, 994, 995, 1347
BsaXI ACNNNNNCTCC 3 cut(s) 16, 28, 46
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse1I ACTGG 3 cut(s) 713, 1164, 1170
Bse21I CCTNAGG 1 cut(s) 1072
Bse8I GATNNNNATC 1 cut(s) 365
BseBI CCWGG 2 cut(s) 131, 996
BseCI ATCGAT 1 cut(s) 1557
BseDI CCNNGG 6 cut(s) 129, 138, 960, 994, 995, 1347
BseGI GGATG 5 cut(s) 148, 1228, 1336, 1441, 1549
BseJI GATNNNNATC 1 cut(s) 365
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMII CTCAG 5 cut(s) 533, 1073, 1410, 1417, 1541
BseNI ACTGG 3 cut(s) 713, 1164, 1170
BseRI GAGGAG 3 cut(s) 19, 40, 396
BseXI GCAGC 4 cut(s) 298, 502, 1426, 1554
BseYI CCCAGC 2 cut(s) 173, 1358
BsgI GTGCAG 1 cut(s) 1425
Bsh1285I CGRYCG 1 cut(s) 1557
BshFI GGCC 1 cut(s) 1346
BshVI ATCGAT 1 cut(s) 1557
BsiEI CGRYCG 1 cut(s) 1557
BslFI GGGAC 1 cut(s) 1152
BslI CCNNNNNNNGG 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 1152
BsmI GAATGC 2 cut(s) 445, 1285
BsnI GGCC 1 cut(s) 1346
Bsp119I TTCGAA 1 cut(s) 892
Bsp1286I GDGCHC 1 cut(s) 1210
Bsp143I GATC 7 cut(s) 907, 1006, 1108, 1234, 1554, 1558, 1575
Bsp1720I GCTNAGC 1 cut(s) 1419
Bsp19I CCATGG 1 cut(s) 960
BspACI CCGC 5 cut(s) 95, 194, 425, 665, 1251
BspANI GGCC 1 cut(s) 1346
BspCNI CTCAG 5 cut(s) 532, 1074, 1411, 1416, 1540
BspDI ATCGAT 1 cut(s) 1557
BspLI GGNNCC 4 cut(s) 111, 713, 909, 1110
BspPI GGATC 5 cut(s) 902, 915, 1014, 1103, 1116
BspT104I TTCGAA 1 cut(s) 892
BsrBI CCGCTC 1 cut(s) 95
BsrI ACTGG 3 cut(s) 713, 1164, 1170
BssECI CCNNGG 6 cut(s) 129, 138, 960, 994, 995, 1347
BssMI GATC 7 cut(s) 907, 1006, 1108, 1234, 1554, 1558, 1575
BssT1I CCWWGG 3 cut(s) 138, 960, 1347
Bst2UI CCWGG 2 cut(s) 131, 996
Bst4CI ACNGT 5 cut(s) 432, 596, 818, 839, 1536
Bst6I CTCTTC 1 cut(s) 894
BstBI TTCGAA 1 cut(s) 892
BstC8I GCNNGC 6 cut(s) 171, 198, 202, 572, 1054, 1201
BstDEI CTNAG 7 cut(s) 519, 875, 1072, 1082, 1403, 1419, 1527
BstDSI CCRYGG 1 cut(s) 960
BstF5I GGATG 5 cut(s) 148, 1228, 1336, 1441, 1549
BstH2I RGCGCY 3 cut(s) 272, 406, 591
BstHHI GCGC 3 cut(s) 271, 405, 590
BstKTI GATC 7 cut(s) 910, 1009, 1111, 1237, 1557, 1561, 1578
BstMBI GATC 7 cut(s) 907, 1006, 1108, 1234, 1554, 1558, 1575
BstMCI CGRYCG 1 cut(s) 1557
BstMWI GCNNNNNNNGC 3 cut(s) 179, 1205, 1343
BstNI CCWGG 2 cut(s) 131, 996
BstNSI RCATGY 2 cut(s) 200, 323
BstSCI CCNGG 2 cut(s) 129, 994
BstSFI CTRYAG 1 cut(s) 945
BstV1I GCAGC 4 cut(s) 298, 502, 1426, 1554
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 2 cut(s) 907, 1108
BstXI CCANNNNNNTGG 1 cut(s) 645
BstYI RGATCY 2 cut(s) 907, 1108
Bsu15I ATCGAT 1 cut(s) 1557
Bsu36I CCTNAGG 1 cut(s) 1072
BsuI GTATCC 1 cut(s) 949
BsuRI GGCC 1 cut(s) 1346
BsuTUI ATCGAT 1 cut(s) 1557
BtgI CCRYGG 1 cut(s) 960
BtsCI GGATG 5 cut(s) 148, 1228, 1336, 1441, 1549
BtsIMutI CAGTG 3 cut(s) 428, 706, 908
Cac8I GCNNGC 6 cut(s) 171, 198, 202, 572, 1054, 1201
CaiI CAGNNNCTG 2 cut(s) 1304, 1567
CfoI GCGC 3 cut(s) 271, 405, 590
Cfr13I GGNCC 1 cut(s) 922
ClaI ATCGAT 1 cut(s) 1557
CseI GACGC 1 cut(s) 380
Csp6I GTAC 2 cut(s) 827, 1248
CviAII CATG 6 cut(s) 155, 197, 320, 668, 961, 1175
CviQI GTAC 2 cut(s) 827, 1248
DdeI CTNAG 7 cut(s) 519, 875, 1072, 1082, 1403, 1419, 1527
DpnI GATC 7 cut(s) 909, 1008, 1110, 1236, 1556, 1560, 1577
DpnII GATC 7 cut(s) 907, 1006, 1108, 1234, 1554, 1558, 1575
DraI TTTAAA 1 cut(s) 508
Eam1104I CTCTTC 1 cut(s) 894
EarI CTCTTC 1 cut(s) 894
Eco130I CCWWGG 3 cut(s) 138, 960, 1347
Eco147I AGGCCT 1 cut(s) 1346
Eco24I GRGCYC 1 cut(s) 1210
Eco47I GGWCC 1 cut(s) 922
Eco47III AGCGCT 1 cut(s) 270
Eco57I CTGAAG 2 cut(s) 99, 1325
Eco81I CCTNAGG 1 cut(s) 1072
EcoRI GAATTC 1 cut(s) 897
EcoRII CCWGG 2 cut(s) 129, 994
EcoT14I CCWWGG 3 cut(s) 138, 960, 1347
EcoT38I GRGCYC 1 cut(s) 1210
ErhI CCWWGG 3 cut(s) 138, 960, 1347
FaeI CATG 6 cut(s) 158, 200, 323, 671, 964, 1178
FalI AAGNNNNNCTT 4 cut(s) 840, 872, 873, 905
FaqI GGGAC 1 cut(s) 1152
FatI CATG 6 cut(s) 154, 196, 319, 667, 960, 1174
FblI GTMKAC 1 cut(s) 1078
Fnu4HI GCNGC 6 cut(s) 96, 312, 425, 516, 1440, 1568
FokI GGATG 5 cut(s) 155, 1235, 1343, 1448, 1556
FriOI GRGCYC 1 cut(s) 1210
Fsp4HI GCNGC 6 cut(s) 96, 312, 425, 516, 1440, 1568
FspBI CTAG 2 cut(s) 1031, 1409
GlaI GCGC 3 cut(s) 270, 404, 589
GluI GCNGC 6 cut(s) 96, 312, 425, 516, 1440, 1568
GsaI CCCAGC 2 cut(s) 177, 1362
HaeII RGCGCY 3 cut(s) 272, 406, 591
HaeIII GGCC 1 cut(s) 1346
HgaI GACGC 1 cut(s) 380
HhaI GCGC 3 cut(s) 271, 405, 590
Hin1II CATG 6 cut(s) 158, 200, 323, 671, 964, 1178
Hin6I GCGC 3 cut(s) 269, 403, 588
HinP1I GCGC 3 cut(s) 269, 403, 588
HindIII AAGCTT 1 cut(s) 882
HinfI GANTC 6 cut(s) 125, 158, 352, 551, 739, 1061
HphI GGTGA 2 cut(s) 361, 398
Hpy166II GTNNAC 2 cut(s) 35, 1079
Hpy188I TCNGA 8 cut(s) 118, 357, 658, 744, 1011, 1530, 1563, 1580
Hpy188III TCNNGA 4 cut(s) 78, 458, 539, 563
Hpy8I GTNNAC 2 cut(s) 35, 1079
Hpy99I CGWCG 1 cut(s) 396
HpyAV CCTTC 7 cut(s) 48, 123, 323, 739, 776, 1178, 1469
HpyCH4III ACNGT 5 cut(s) 432, 596, 818, 839, 1536
HpyCH4V TGCA 8 cut(s) 347, 528, 604, 734, 1178, 1285, 1442, 1454
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 1205, 1343
HpyF3I CTNAG 7 cut(s) 519, 875, 1072, 1082, 1403, 1419, 1527
Hsp92II CATG 6 cut(s) 158, 200, 323, 671, 964, 1178
HspAI GCGC 3 cut(s) 269, 403, 588
Kzo9I GATC 7 cut(s) 907, 1006, 1108, 1234, 1554, 1558, 1575
LmnI GCTCC 3 cut(s) 639, 996, 1049
Lsp1109I GCAGC 4 cut(s) 298, 502, 1426, 1554
LweI GCATC 3 cut(s) 1148, 1426, 1534
MaeI CTAG 2 cut(s) 1031, 1409
MaeIII GTNAC 3 cut(s) 445, 1318, 1379
MalI GATC 7 cut(s) 909, 1008, 1110, 1236, 1556, 1560, 1577
MbiI CCGCTC 1 cut(s) 95
MboI GATC 7 cut(s) 907, 1006, 1108, 1234, 1554, 1558, 1575
MflI RGATCY 2 cut(s) 907, 1108
MhlI GDGCHC 1 cut(s) 1210
MluCI AATT 9 cut(s) 47, 86, 149, 221, 599, 641, 650, 897, 1088
MlyI GAGTC 2 cut(s) 167, 346
MmeI TCCRAC 1 cut(s) 1413
MroXI GAANNNNTTC 4 cut(s) 68, 108, 852, 883
MseI TTAA 3 cut(s) 89, 507, 1491
MspR9I CCNGG 2 cut(s) 131, 996
Mva1269I GAATGC 2 cut(s) 445, 1285
MvaI CCWGG 2 cut(s) 131, 996
MwoI GCNNNNNNNGC 3 cut(s) 179, 1205, 1343
NcoI CCATGG 1 cut(s) 960
NdeII GATC 7 cut(s) 907, 1006, 1108, 1234, 1554, 1558, 1575
NlaIII CATG 6 cut(s) 158, 200, 323, 671, 964, 1178
NlaIV GGNNCC 4 cut(s) 111, 713, 909, 1110
NmuCI GTSAC 3 cut(s) 445, 1318, 1379
NspI RCATGY 2 cut(s) 200, 323
NspV TTCGAA 1 cut(s) 892
PaeI GCATGC 1 cut(s) 200
PasI CCCWGGG 1 cut(s) 995
PceI AGGCCT 1 cut(s) 1346
PciI ACATGT 1 cut(s) 319
PctI GAATGC 2 cut(s) 445, 1285
PdmI GAANNNNTTC 4 cut(s) 68, 108, 852, 883
PfeI GAWTC 4 cut(s) 125, 551, 739, 1061
PkrI GCNGC 6 cut(s) 97, 313, 426, 517, 1441, 1569
Ple19I CGATCG 1 cut(s) 1557
PleI GAGTC 2 cut(s) 166, 346
PpsI GAGTC 2 cut(s) 166, 346
PscI ACATGT 1 cut(s) 319
PsiI TTATAA 1 cut(s) 614
Psp6I CCWGG 2 cut(s) 129, 994
PspFI CCCAGC 2 cut(s) 173, 1358
PspGI CCWGG 2 cut(s) 129, 994
PspN4I GGNNCC 4 cut(s) 111, 713, 909, 1110
PspPI GGNCC 1 cut(s) 922
PstNI CAGNNNCTG 2 cut(s) 1304, 1567
PsuI RGATCY 2 cut(s) 907, 1108
PvuI CGATCG 1 cut(s) 1557
RsaI GTAC 2 cut(s) 828, 1249
RsaNI GTAC 2 cut(s) 827, 1248
SaqAI TTAA 3 cut(s) 89, 507, 1491
SatI GCNGC 6 cut(s) 96, 312, 425, 516, 1440, 1568
Sau3AI GATC 7 cut(s) 907, 1006, 1108, 1234, 1554, 1558, 1575
Sau96I GGNCC 1 cut(s) 922
SchI GAGTC 2 cut(s) 167, 346
ScrFI CCNGG 2 cut(s) 131, 996
SduI GDGCHC 1 cut(s) 1210
SfaNI GCATC 3 cut(s) 1148, 1426, 1534
SfcI CTRYAG 1 cut(s) 945
SfuI TTCGAA 1 cut(s) 892
SinI GGWCC 1 cut(s) 922
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
SphI GCATGC 1 cut(s) 200
Sse9I AATT 9 cut(s) 47, 86, 149, 221, 599, 641, 650, 897, 1088
SseBI AGGCCT 1 cut(s) 1346
SsiI CCGC 5 cut(s) 95, 194, 425, 665, 1251
SspI AATATT 3 cut(s) 468, 1020, 1489
SspMI CTAG 2 cut(s) 1031, 1409
StuI AGGCCT 1 cut(s) 1346
StyD4I CCNGG 2 cut(s) 129, 994
StyI CCWWGG 3 cut(s) 138, 960, 1347
TaaI ACNGT 5 cut(s) 432, 596, 818, 839, 1536
TaqI TCGA 5 cut(s) 627, 892, 1142, 1557, 1574
TasI AATT 9 cut(s) 47, 86, 149, 221, 599, 641, 650, 897, 1088
TauI GCSGC 2 cut(s) 98, 427
TfiI GAWTC 4 cut(s) 125, 551, 739, 1061
Tru1I TTAA 3 cut(s) 89, 507, 1491
Tru9I TTAA 3 cut(s) 89, 507, 1491
TscAI CASTG 3 cut(s) 435, 713, 908
TseFI GTSAC 3 cut(s) 445, 1318, 1379
TseI GCWGC 4 cut(s) 311, 515, 1439, 1567
Tsp45I GTSAC 3 cut(s) 445, 1318, 1379
TspDTI ATGAA 7 cut(s) 77, 117, 138, 452, 546, 684, 810
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 3 cut(s) 435, 713, 908
VpaK11BI GGWCC 1 cut(s) 922
XapI RAATTY 2 cut(s) 47, 897
XceI RCATGY 2 cut(s) 200, 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 1261
XmiI GTMKAC 1 cut(s) 1078
XmnI GAANNNNTTC 4 cut(s) 68, 108, 852, 883
XspI CTAG 2 cut(s) 1031, 1409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.