MD05G1192700.v1.1

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0001424
Physical Location & Seq
Reverse (-)
32072200 .. 32074144
1945 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1192700.v1.1.491

Sequence Viewer

Length: 1062 bp
ATGTGTTTTCCAGCTTTGTTATTGGCATCGAAGATATGTGGGGAAAATCCCAGTCCCCGTCATGCAGAAGAAGGGGTAGGATTTGCCTGCAGAGCCCTTGAAAGTTTGGATGGTAAATGTGATCATTTGAAAAGTACCACCACTTGTTTGTTGGGCATATCACTTTCTGTGCATTCTAAATCAGCGATTGCTGATTGTGAGAGAGTGACAAGACAGGATGAGGCACGTCAGGCCTTGGAAACTTCTGGGAGAATGACAACAATGAGTGACCCTGTTTTTCTTTACCATCTCAGCCTAGAATATGCTGAGCAGAGAGAGTTGGATGCTGCACTTGATTGTGCAAAGAAAATGCTAAAGCTGGAAGGTGGTTGTAATGTTAGAGGTTGGTTATTATTGACCAGAATACTGTCAGCTCAGAAACGGTTTGTGGATGCTGAAACGATCATAGAGGCTGCTTTGGATCAGACAGGGAAATGGGAACAAGGAGAACTACTGAGAACCAAAGCCAAACTTCAAATTGCCCAGGGTCAGTTTAAAAATGCCATTGCAACCTATACTCACATTCTTGCTTTTGTTCAAAGTACCAGAGATTTATCTGGAAGGTTGAACTTGGAAATATGGAATGACCTGGCATATTTCTATATAAATCTTTCACAATGGCGTGATGCTGAGGCTTGTCTGGCCAAATCTAAATCCAGAAGTGCTTACTCTGCTGACAGATGCCATGCCACAGGTTTACTTCATGAAAGGAAGGGCCTCTATAAAGAATCTCTAAGAGCATATTCAGAAGCTCTGGATATTGACCCCTCCCATGTACTGAGCTTGATCTCTACGGCTGTTGTCCTCAGACATCTTGGCGGCAGCTCACACCACTCTCACACAGTTATCCGAAGCCTTCTGTTGAATGCACTAAACCTTGATAGATCGAACCATTCTGCATGGTATAACCTTGGTATACTGTACAAATCTCAGGGTAAGCCATCTTCTTCATTAGAGGCTGCTGAATGTTTCAAGGCTGCACTCTCTCTCGAAGAGTCTGCTCCTGTTGAACCCTTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008104 GO:0008150 GO:0033036 GO:0034613 GO:0051179 GO:0051641 GO:0070727 GO:0072657 GO:0072659 GO:1990778
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

354

Amino Acids

39.11

Weight (kDa)

7.19

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 955
AciI CCGC 1 cut(s) 858
AclWI GGATC 1 cut(s) 468
AcoI YGGCCR 1 cut(s) 681
AcuI CTGAAG 1 cut(s) 1039
AfaI GTAC 4 cut(s) 136, 583, 816, 962
AgsI TTSAA 8 cut(s) 101, 130, 515, 578, 607, 904, 1012, 1049
AjiI CACGTC 1 cut(s) 227
AjnI CCWGG 2 cut(s) 522, 627
AluBI AGCT 6 cut(s) 14, 358, 413, 791, 822, 864
AluI AGCT 6 cut(s) 14, 358, 413, 791, 822, 864
AlwI GGATC 1 cut(s) 468
AoxI GGCC 3 cut(s) 231, 681, 754
ApeKI GCWGC 5 cut(s) 326, 452, 861, 998, 1016
AspS9I GGNCC 1 cut(s) 754
BalI TGGCCA 1 cut(s) 683
BanII GRGCYC 1 cut(s) 97
BarI GAAGNNNNNNTAC 2 cut(s) 967, 999
BbvCI CCTCAGC 1 cut(s) 669
BbvI GCAGC 5 cut(s) 313, 439, 873, 985, 1003
BccI CCATC 3 cut(s) 104, 294, 988
BceAI ACGGC 1 cut(s) 849
BcgI CGANNNNNNTGC 2 cut(s) 1019, 1053
BciT130I CCWGG 2 cut(s) 524, 629
BclI TGATCA 1 cut(s) 121
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 88
BisI GCNGC 6 cut(s) 327, 453, 859, 862, 999, 1017
BlpI GCTNAGC 1 cut(s) 306
BlsI GCNGC 6 cut(s) 328, 454, 860, 863, 1000, 1018
Bme1390I CCNGG 2 cut(s) 524, 629
BmgBI CACGTC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 754
BmrFI CCNGG 2 cut(s) 524, 629
BmrI ACTGGG 1 cut(s) 45
BmsI GCATC 5 cut(s) 35, 313, 421, 655, 710
BmuI ACTGGG 1 cut(s) 45
Bpu10I CCTNAGC 1 cut(s) 669
Bpu1102I GCTNAGC 1 cut(s) 306
BsaJI CCNNGG 4 cut(s) 234, 522, 523, 949
Bse1I ACTGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 543
BseBI CCWGG 2 cut(s) 524, 629
BseDI CCNNGG 4 cut(s) 234, 522, 523, 949
BseGI GGATG 4 cut(s) 115, 223, 328, 436
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 8 cut(s) 297, 304, 428, 485, 660, 809, 859, 983
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 5 cut(s) 313, 439, 873, 985, 1003
BsgI GTGCAG 2 cut(s) 312, 1002
BshFI GGCC 3 cut(s) 233, 683, 756
BslFI GGGAC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 39
BsmI GAATGC 2 cut(s) 172, 910
BsnI GGCC 3 cut(s) 233, 683, 756
Bsp1286I GDGCHC 1 cut(s) 97
Bsp1407I TGTACA 1 cut(s) 960
Bsp143I GATC 5 cut(s) 121, 441, 460, 825, 923
Bsp1720I GCTNAGC 1 cut(s) 306
BspACI CCGC 1 cut(s) 858
BspANI GGCC 3 cut(s) 233, 683, 756
BspCNI CTCAG 8 cut(s) 298, 303, 427, 486, 661, 810, 858, 982
BspHI TCATGA 1 cut(s) 742
BspMAI CTGCAG 1 cut(s) 92
BspPI GGATC 1 cut(s) 468
BsrDI GCAATG 1 cut(s) 543
BsrGI TGTACA 1 cut(s) 960
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 4 cut(s) 234, 522, 523, 949
BssMI GATC 5 cut(s) 121, 441, 460, 825, 923
BssNAI GTATAC 1 cut(s) 956
BssT1I CCWWGG 2 cut(s) 234, 949
Bst1107I GTATAC 1 cut(s) 956
Bst2UI CCWGG 2 cut(s) 524, 629
Bst4CI ACNGT 4 cut(s) 408, 423, 883, 960
Bst6I CTCTTC 1 cut(s) 1026
BstAUI TGTACA 1 cut(s) 960
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 9 cut(s) 290, 306, 414, 494, 669, 773, 818, 845, 969
BstF5I GGATG 4 cut(s) 115, 223, 328, 436
BstKTI GATC 5 cut(s) 124, 444, 463, 828, 926
BstMBI GATC 5 cut(s) 121, 441, 460, 825, 923
BstMWI GCNNNNNNNGC 4 cut(s) 92, 230, 680, 710
BstNI CCWGG 2 cut(s) 524, 629
BstSCI CCNGG 2 cut(s) 522, 627
BstSFI CTRYAG 1 cut(s) 88
BstV1I GCAGC 5 cut(s) 313, 439, 873, 985, 1003
BstZ17I GTATAC 1 cut(s) 956
BsuRI GGCC 3 cut(s) 233, 683, 756
BtrI CACGTC 1 cut(s) 227
BtsCI GGATG 4 cut(s) 115, 223, 328, 436
Cac8I GCNNGC 1 cut(s) 88
CciI TCATGA 1 cut(s) 742
Cfr13I GGNCC 1 cut(s) 754
Csp6I GTAC 4 cut(s) 135, 582, 815, 961
CviAII CATG 5 cut(s) 62, 725, 743, 812, 939
CviQI GTAC 4 cut(s) 135, 582, 815, 961
DdeI CTNAG 9 cut(s) 290, 306, 414, 494, 669, 773, 818, 845, 969
DpnI GATC 5 cut(s) 123, 443, 462, 827, 925
DpnII GATC 5 cut(s) 121, 441, 460, 825, 923
DraI TTTAAA 1 cut(s) 535
EaeI YGGCCR 1 cut(s) 681
Eam1104I CTCTTC 1 cut(s) 1026
EarI CTCTTC 1 cut(s) 1026
Eco130I CCWWGG 2 cut(s) 234, 949
Eco147I AGGCCT 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 1039
EcoO109I RGGNCCY 1 cut(s) 754
EcoRII CCWGG 2 cut(s) 522, 627
EcoT14I CCWWGG 2 cut(s) 234, 949
EcoT38I GRGCYC 1 cut(s) 97
ErhI CCWWGG 2 cut(s) 234, 949
FaeI CATG 5 cut(s) 65, 728, 746, 815, 942
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FaqI GGGAC 1 cut(s) 39
FatI CATG 5 cut(s) 61, 724, 742, 811, 938
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 1 cut(s) 955
Fnu4HI GCNGC 6 cut(s) 327, 453, 859, 862, 999, 1017
FokI GGATG 4 cut(s) 122, 230, 335, 443
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 6 cut(s) 327, 453, 859, 862, 999, 1017
FspBI CTAG 1 cut(s) 296
GluI GCNGC 6 cut(s) 327, 453, 859, 862, 999, 1017
HaeIII GGCC 3 cut(s) 233, 683, 756
Hin1II CATG 5 cut(s) 65, 728, 746, 815, 942
HinfI GANTC 2 cut(s) 767, 1034
Hpy166II GTNNAC 2 cut(s) 737, 956
Hpy188I TCNGA 6 cut(s) 417, 465, 787, 848, 890, 1058
Hpy188III TCNNGA 5 cut(s) 597, 696, 743, 794, 1028
Hpy8I GTNNAC 2 cut(s) 737, 956
HpyAV CCTTC 5 cut(s) 65, 356, 594, 745, 905
HpyCH4III ACNGT 4 cut(s) 408, 423, 883, 960
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 9 cut(s) 65, 90, 172, 329, 341, 548, 908, 938, 1019
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 230, 680, 710
HpyF3I CTNAG 9 cut(s) 290, 306, 414, 494, 669, 773, 818, 845, 969
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 5 cut(s) 65, 728, 746, 815, 942
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 5 cut(s) 121, 441, 460, 825, 923
LmnI GCTCC 1 cut(s) 1045
Lsp1109I GCAGC 5 cut(s) 313, 439, 873, 985, 1003
LweI GCATC 5 cut(s) 35, 313, 421, 655, 710
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 2 cut(s) 205, 266
MalI GATC 5 cut(s) 123, 443, 462, 827, 925
MboI GATC 5 cut(s) 121, 441, 460, 825, 923
MboII GAAGA 5 cut(s) 43, 80, 975, 978, 1043
MhlI GDGCHC 1 cut(s) 97
MlsI TGGCCA 1 cut(s) 683
MluCI AATT 1 cut(s) 516
MluNI TGGCCA 1 cut(s) 683
MlyI GAGTC 1 cut(s) 1043
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 8 cut(s) 214, 374, 442, 664, 767, 817, 854, 988
Mox20I TGGCCA 1 cut(s) 683
MscI TGGCCA 1 cut(s) 683
MseI TTAA 1 cut(s) 534
Msp20I TGGCCA 1 cut(s) 683
MspR9I CCNGG 2 cut(s) 524, 629
Mva1269I GAATGC 2 cut(s) 172, 910
MvaI CCWGG 2 cut(s) 524, 629
MwoI GCNNNNNNNGC 4 cut(s) 92, 230, 680, 710
NdeII GATC 5 cut(s) 121, 441, 460, 825, 923
NlaIII CATG 5 cut(s) 65, 728, 746, 815, 942
NmuCI GTSAC 2 cut(s) 205, 266
PagI TCATGA 1 cut(s) 742
PasI CCCWGGG 1 cut(s) 523
PceI AGGCCT 1 cut(s) 233
PctI GAATGC 2 cut(s) 172, 910
PfeI GAWTC 1 cut(s) 767
PkrI GCNGC 6 cut(s) 328, 454, 860, 863, 1000, 1018
PleI GAGTC 1 cut(s) 1042
PpsI GAGTC 1 cut(s) 1042
Psp6I CCWGG 2 cut(s) 522, 627
PspGI CCWGG 2 cut(s) 522, 627
PspPI GGNCC 1 cut(s) 754
PstI CTGCAG 1 cut(s) 92
RsaI GTAC 4 cut(s) 136, 583, 816, 962
RsaNI GTAC 4 cut(s) 135, 582, 815, 961
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 6 cut(s) 327, 453, 859, 862, 999, 1017
Sau3AI GATC 5 cut(s) 121, 441, 460, 825, 923
Sau96I GGNCC 1 cut(s) 754
SchI GAGTC 1 cut(s) 1043
ScrFI CCNGG 2 cut(s) 524, 629
SduI GDGCHC 1 cut(s) 97
SfaNI GCATC 5 cut(s) 35, 313, 421, 655, 710
SfcI CTRYAG 1 cut(s) 88
Sse9I AATT 1 cut(s) 516
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 1 cut(s) 858
SspMI CTAG 1 cut(s) 296
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 2 cut(s) 522, 627
StyI CCWWGG 2 cut(s) 234, 949
TaaI ACNGT 4 cut(s) 408, 423, 883, 960
TaiI ACGT 1 cut(s) 229
TaqI TCGA 3 cut(s) 29, 926, 1029
TasI AATT 1 cut(s) 516
TatI WGTACW 2 cut(s) 814, 960
TauI GCSGC 1 cut(s) 861
TfiI GAWTC 1 cut(s) 767
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseFI GTSAC 2 cut(s) 205, 266
TseI GCWGC 5 cut(s) 326, 452, 861, 998, 1016
Tsp45I GTSAC 2 cut(s) 205, 266
TspDTI ATGAA 3 cut(s) 731, 759, 978
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 955
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.