Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001424

Physical Location & Seq

Genomic Coordinates Forward (+)

22412808 .. 22419041

Gene Structure 6234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1222900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGAGAACTAAGAAGTGGATGAGTAAGAGAAGATTCAGCATTAAAGGGAGGTTGGAAAAAATTCTAAAGTGTATACGTTCCGGTGAGCAGTTAAGGGTAGATGAAGTTCCTCATTCATCCGACTCCCTTGCTACTCGGGACTACTCAGCTAGTGGTGGCACTGGCTGCTCGACGCGGACGGGTGAGGTAGAAACAAAGGTGGATAACAGCAATATCGAAGAAGCTGAGTCGTCTCTGCGAGAGAGTGGTTATTTGAACTATGAGGAAGCAAGAGCTCTATTAGGAAGGCTTGAGTATCAAAAAGGTAACACAGAAGCTGCTCTTCATGTATTTGAAGGAATTGACATTGCTGGTGTGATTCCCAAGATGAAAGTCTCCATTTCTCGAAGATGCGAGACCAACAGACGCCGTTCTCAAAGCGATTCTGTCCCACCCATGTCTATGCATGCTGTTAGTTTACTCCTTGAAGCTATTTTTCTCAAAGCAAAGTCGTTGCAGGGCCTTGGACGGTTGGGAGAAGCTGCTCAATCTTGCAAACTTATTTTGGACACTGTTGAATCTGCATTACCAGATGGCTTGCCCGAAAACTTTGCTTCAGATTGTAAATTACAAGAGACTGTAGGTAAAGCTGTTGAGTTACTTCCAGAGTTGTGGATACTTGCTGGGGCTCCCCAAGAAGCTATCTTATCATACCGGCAGGCTCTCCTCTATCGTTGGAATCTTGACATTGAACTTGCTTCAAAGATGGAAAAAGAATTTGCAGTTTTTCTCCTGTACAGTGGTTGTGATGCGAACCCTCCAAATCTCTGTTCGCAGATGGAAAGCTCTTTTGTGCCAAGAAACAATATAGAAGAGGCTATTCTGCTGTTGTTGGTTCTACTAGGAAAATTTGTTGCCGGAACGATTGAATGGGACCCATCAATCCTTGATCATCTTTCTTTTGCCTTGTCCATTTCAGGGAAAGTGAGGGCCCTAGCCCATCAGGTTGAAGAATTGATTCCTGGAATTATGGGAAGACAAGAAAGATATTGCACTCTAGCCCTTTGTTACTATGGTGAAGGTGAGGACTTGGTTGCTTTGAATCTTTTGAAAAATATTTTAAATAATCGAGAGAACATGGACTGCATTCTGGAGTTGTTACTGGCTTCGAAGATTTGCAGTGAAAATTTGGTTTGCATTGAGGATGGGACCAAATACGCGTACAAAGCACTGTCAGATTTGGATGGAAAATGCAGCCAAATGTCGACTATCGCAAATTGCTTACTTGGTCTTTCCCTGTCAGTTAAATCCAGATCAGTCACTTCTGATTCTGAAAGGATTTTGAAGCAGTCTGAAGCAATACAAGCACTACAAACTGCTAATAAAATTACGAAAGATAGGAATCCTTACATTTTATTTCATCTTTGTCTAGAACACGCTGAGCAAAGGAAGTTGGATATTGCACTTTATTATGCAAAGCAGCTATTAAAACTTGAGGCTGGGTCCAGTGTAAAATCATATGCTCTTTTGGCACAAATATTGTCAGCTCAAAAACGGTTCATTGATGCTGAGACTGTAATCAATGCTGCTCTAGATCAGACGGGGAAGTGGGATCAAGGAGAACTGTTGCGAACAAAAGCAAAACTACATATTGCACAAGGCCAGCTGAAGAATGCCATAGAAACATACACCAATCTTCTGGCTGTTCTTCAAGTTCGGACTAAAAACTTAGGTGTTGACAAGAGGCTTTTAAAGAGTAGGAGAAACCATAATAGAAGTTTGGAAATGGAGACTTGGCACGACTTGGCCAATTTATATACAAGCTTGTCCCAATGGCGGGATGCTGAGGTCTGCCTTTCAAAATCCCAGAGCATCAATCCTCATTCTGCTTCCAGATGGCATTCTACAGGTTTACTCTATGAAGCTAAGGGTCTCCAGCAAGAAGCTTTGGAATCTTTCAGGAAGGCATTAGATGTCGAACCTACCCACGTCCCAAGCTTGATATCCGCTGCCTGTATTCTAAGACAGTTCGGTGGCCAATCTTTACCAGTCGCCAGAAGCTTTCTCATGGATGCGCTACGACTTGACAGAGGAAACCCTTGCGCTTGGTACAATCTCGGGCTGCTGTACAAAGCTGATGCGAGGGCATCAATGCTAGAAACAGCCGAGTGCTTTGAGGCAGCAGCCTTTTTTGAAGAACATGCTCCGATCGAACCCTTTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016310 GO:0019637 GO:0030258 GO:0033036 GO:0034613 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0071944 GO:0072657 GO:0072659 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_8

Protein Analysis

735

Amino Acids

81.86

Weight (kDa)

6.58

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28600 AT4G28600 AT4G28600
fragaria_vesca	FvH4_2g20940 FvH4_2g20940 FvH4_2g20940 FvH4_2g20940 FvH4_2g20940 FvH4_4g04130 FvH4_4g04130 FvH4_4g04130 FvH4_4g04130 FvH4_4g04130 FvH4_4g04130
malus_domestica	MD05G1192700.v1.1 MD10G1179200.v1.1 MD13G1217700.v1.1 MD16G1222900.v1.1
prunus_persica	Prupe.1G044600_v2.0.a1 Prupe.1G044600_v2.0.a1 Prupe.8G219000_v2.0.a1 Prupe.8G219000_v2.0.a1 Prupe.8G219000_v2.0.a1
pyrus_communis	pycom10g15540 pycom13g19100 pycom16g18670 pycom16g18680
rosa_chinensis	RchiOBHm_Chr4g0394501 RchiOBHm_Chr6g0287321
rosa_laevigata	RLG00000009693 RLG00000012501
rosa_multiflora	Rmu_sc0005424.1_g000020 Rmu_sc0007029.1_g000031
rosa_roxburghii	Rroxscaffold_5G00339560 Rroxscaffold_7G00181540
rosa_rugosa	Rorug03G0365300.1 Rorug03G0365400.1 Rorug03G0365500.1 Rorug06G0187000 Rorug06G0187100 Rorug06G0187100
rosa_samantha	Rh4AG052600 Rh4BG050400 Rh4CG056800 Rh4DG049500 Rh6AG298400 Rh6BG303800 Rh6CG306000 Rh6CG312100 Rh6DG295700
rosa_wichuraiana	Rw4G004240 Rw6G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	73, 1244
AccII	CGCG	2 cut(s)	175, 1199
AciI	CCGC	3 cut(s)	175, 1816, 1986
AclWI	GGATC	1 cut(s)	1599
AcoI	YGGCCR	2 cut(s)	1785, 2014
AcsI	RAATTY	4 cut(s)	60, 755, 887, 1165
AcuI	CTGAAG	3 cut(s)	579, 1353, 1667
AcyI	GRCGYC	1 cut(s)	406
AfaI	GTAC	4 cut(s)	776, 1202, 2090, 2108
AfiI	CCNNNNNNNGG	3 cut(s)	957, 1815, 1816
AflIII	ACRYGT	1 cut(s)	1197
AjiI	CACGTC	1 cut(s)	1969
AjnI	CCWGG	1 cut(s)	1000
AjuI	GAANNNNNNNTTGG	2 cut(s)	793, 825
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	7 cut(s)	237, 379, 389, 608, 1544, 1763, 1916
AlwI	GGATC	1 cut(s)	1599
AlwNI	CAGNNNCTG	1 cut(s)	317
Ama87I	CYCGRG	2 cut(s)	135, 2096
AoxI	GGCC	5 cut(s)	499, 969, 1639, 1785, 2014
ApaI	GGGCCC	1 cut(s)	973
ApoI	RAATTY	4 cut(s)	60, 755, 887, 1165
Asp700I	GAANNNNTTC	3 cut(s)	60, 996, 2196
AspLEI	GCGC	2 cut(s)	2056, 2084
AspS9I	GGNCC	6 cut(s)	499, 913, 969, 970, 1188, 1482
AsuHPI	GGTGA	4 cut(s)	95, 194, 1067, 1073
AsuII	TTCGAA	1 cut(s)	1148
AvaI	CYCGRG	2 cut(s)	135, 2096
AvaII	GGWCC	3 cut(s)	913, 1188, 1482
BaeGI	GKGCMC	1 cut(s)	973
BalI	TGGCCA	2 cut(s)	1787, 2016
BanII	GRGCYC	3 cut(s)	277, 670, 973
BbsI	GAAGAC	1 cut(s)	1021
Bbv12I	GWGCWC	1 cut(s)	277
BbvCI	CCTCAGC	1 cut(s)	1824
BccI	CCATC	8 cut(s)	566, 739, 811, 925, 987, 1178, 1217, 1869
BceAI	ACGGC	1 cut(s)	393
BcgI	CGANNNNNNTGC	4 cut(s)	110, 144, 572, 606
BciT130I	CCWGG	1 cut(s)	1002
BciVI	GTATCC	1 cut(s)	648
BclI	TGATCA	1 cut(s)	928
BcoDI	GTCTC	7 cut(s)	237, 379, 389, 608, 1544, 1763, 1916
BfaI	CTAG	7 cut(s)	150, 881, 974, 1037, 1409, 1571, 2135
BfmI	CTRYAG	2 cut(s)	618, 1884
BfuI	GTATCC	1 cut(s)	648
BlpI	GCTNAGC	1 cut(s)	1419
Bme1390I	CCNGG	1 cut(s)	1002
Bme18I	GGWCC	3 cut(s)	913, 1188, 1482
BmeT110I	CYCGRG	2 cut(s)	135, 2096
BmgBI	CACGTC	1 cut(s)	1969
BmgT120I	GGNCC	6 cut(s)	499, 913, 969, 970, 1188, 1482
BmiI	GGNNCC	6 cut(s)	669, 914, 915, 971, 1189, 1483
BmrFI	CCNGG	1 cut(s)	1002
BmsI	GCATC	8 cut(s)	380, 778, 1534, 1810, 1860, 2041, 2107, 2135
BpiI	GAAGAC	1 cut(s)	1021
BpmI	CTGGAG	2 cut(s)	1151, 1898
Bpu10I	CCTNAGC	2 cut(s)	1824, 1905
Bpu1102I	GCTNAGC	1 cut(s)	1419
Bpu14I	TTCGAA	1 cut(s)	1148
BpuEI	CTTGAG	2 cut(s)	311, 1493
BsaBI	GATNNNNATC	1 cut(s)	1380
BsaHI	GRCGYC	1 cut(s)	406
BsaI	GGTCTC	2 cut(s)	389, 1916
BsaJI	CCNNGG	1 cut(s)	502
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	3 cut(s)	957, 1815, 1816
Bse118I	RCCGGY	1 cut(s)	693
Bse1I	ACTGG	4 cut(s)	166, 1146, 1485, 2027
Bse3DI	GCAATG	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	1380
BseBI	CCWGG	1 cut(s)	1002
BseDI	CCNNGG	1 cut(s)	502
BseGI	GGATG	6 cut(s)	24, 116, 1189, 1228, 1825, 2056
BseJI	GATNNNNATC	1 cut(s)	1380
BseLI	CCNNNNNNNGG	3 cut(s)	957, 1815, 1816
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	5 cut(s)	159, 216, 1410, 1539, 1815
BseNI	ACTGG	4 cut(s)	166, 1146, 1485, 2027
BseRI	GAGGAG	1 cut(s)	695
BseSI	GKGCMC	1 cut(s)	973
BseYI	CCCAGC	2 cut(s)	662, 1478
Bsh1236I	CGCG	2 cut(s)	175, 1199
Bsh1285I	CGRYCG	1 cut(s)	2190
BshFI	GGCC	5 cut(s)	501, 971, 1641, 1787, 2016
BsiEI	CGRYCG	1 cut(s)	2190
BsiHKAI	GWGCWC	1 cut(s)	277
BsiHKCI	CYCGRG	2 cut(s)	135, 2096
BsiSI	CCGG	3 cut(s)	81, 694, 897
BslFI	GGGAC	6 cut(s)	152, 413, 926, 1201, 1792, 1955
BslI	CCNNNNNNNGG	3 cut(s)	957, 1815, 1816
BsmAI	GTCTC	7 cut(s)	237, 379, 389, 608, 1544, 1763, 1916
BsmBI	CGTCTC	1 cut(s)	237
BsmFI	GGGAC	6 cut(s)	152, 413, 926, 1201, 1792, 1955
BsmI	GAATGC	3 cut(s)	1125, 1657, 1879
BsnI	GGCC	5 cut(s)	501, 971, 1641, 1787, 2016
Bso31I	GGTCTC	2 cut(s)	389, 1916
BsoBI	CYCGRG	2 cut(s)	135, 2096
Bsp119I	TTCGAA	1 cut(s)	1148
Bsp120I	GGGCCC	1 cut(s)	969
Bsp1286I	GDGCHC	3 cut(s)	277, 670, 973
Bsp1407I	TGTACA	2 cut(s)	774, 2106
Bsp143I	GATC	5 cut(s)	928, 1292, 1573, 1591, 2187
Bsp1720I	GCTNAGC	1 cut(s)	1419
BspACI	CCGC	3 cut(s)	175, 1816, 1986
BspANI	GGCC	5 cut(s)	501, 971, 1641, 1787, 2016
BspCNI	CTCAG	5 cut(s)	158, 217, 1411, 1540, 1816
BspFNI	CGCG	2 cut(s)	175, 1199
BspLI	GGNNCC	6 cut(s)	669, 914, 915, 971, 1189, 1483
BspPI	GGATC	1 cut(s)	1599
BspQI	GCTCTTC	1 cut(s)	327
BspT104I	TTCGAA	1 cut(s)	1148
BspTNI	GGTCTC	2 cut(s)	389, 1916
BsrDI	GCAATG	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	693
BsrGI	TGTACA	2 cut(s)	774, 2106
BsrI	ACTGG	4 cut(s)	166, 1146, 1485, 2027
BssAI	RCCGGY	1 cut(s)	693
BssECI	CCNNGG	1 cut(s)	502
BssMI	GATC	5 cut(s)	928, 1292, 1573, 1591, 2187
BssNAI	GTATAC	1 cut(s)	74
BssNI	GRCGYC	1 cut(s)	406
BssT1I	CCWWGG	1 cut(s)	502
Bst1107I	GTATAC	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	1002
Bst4CI	ACNGT	9 cut(s)	510, 553, 619, 779, 1212, 1536, 1555, 1605, 2007
Bst6I	CTCTTC	2 cut(s)	327, 846
BstACI	GRCGYC	1 cut(s)	406
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstAUI	TGTACA	2 cut(s)	774, 2106
BstBI	TTCGAA	1 cut(s)	1148
BstC8I	GCNNGC	4 cut(s)	447, 578, 699, 1643
BstDEI	CTNAG	9 cut(s)	9, 145, 225, 1419, 1548, 1708, 1824, 1905, 2000
BstF5I	GGATG	6 cut(s)	24, 116, 1189, 1228, 1825, 2056
BstFNI	CGCG	2 cut(s)	175, 1199
BstHHI	GCGC	2 cut(s)	2056, 2084
BstKTI	GATC	5 cut(s)	931, 1295, 1576, 1594, 2190
BstMAI	GTCTC	7 cut(s)	237, 379, 389, 608, 1544, 1763, 1916
BstMBI	GATC	5 cut(s)	928, 1292, 1573, 1591, 2187
BstMCI	CGRYCG	1 cut(s)	2190
BstMWI	GCNNNNNNNGC	4 cut(s)	165, 1205, 1343, 1508
BstNI	CCWGG	1 cut(s)	1002
BstNSI	RCATGY	2 cut(s)	449, 2183
BstSCI	CCNGG	1 cut(s)	1000
BstSFI	CTRYAG	2 cut(s)	618, 1884
BstSLI	GKGCMC	1 cut(s)	973
BstUI	CGCG	2 cut(s)	175, 1199
BstV2I	GAAGAC	1 cut(s)	1021
BstXI	CCANNNNNNTGG	2 cut(s)	651, 1678
BstZ17I	GTATAC	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	5 cut(s)	501, 971, 1641, 1787, 2016
BtrI	CACGTC	1 cut(s)	1969
BtsCI	GGATG	6 cut(s)	24, 116, 1189, 1228, 1825, 2056
BtsI	GCAGTG	1 cut(s)	1165
BtsIMutI	CAGTG	6 cut(s)	159, 549, 784, 1165, 1208, 1492
Cac8I	GCNNGC	4 cut(s)	447, 578, 699, 1643
CaiI	CAGNNNCTG	1 cut(s)	317
CfoI	GCGC	2 cut(s)	2056, 2084
Cfr10I	RCCGGY	1 cut(s)	693
Cfr13I	GGNCC	6 cut(s)	499, 913, 969, 970, 1188, 1482
CseI	GACGC	2 cut(s)	181, 414
Csp6I	GTAC	4 cut(s)	775, 1201, 2089, 2107
CviAII	CATG	6 cut(s)	326, 436, 446, 1117, 2047, 2180
CviQI	GTAC	4 cut(s)	775, 1201, 2089, 2107
DdeI	CTNAG	9 cut(s)	9, 145, 225, 1419, 1548, 1708, 1824, 1905, 2000
DpnI	GATC	5 cut(s)	930, 1294, 1575, 1593, 2189
DpnII	GATC	5 cut(s)	928, 1292, 1573, 1591, 2187
DraI	TTTAAA	2 cut(s)	1101, 1731
EaeI	YGGCCR	2 cut(s)	1785, 2014
Eam1104I	CTCTTC	2 cut(s)	327, 846
EarI	CTCTTC	2 cut(s)	327, 846
Ecl136II	GAGCTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	502
Eco24I	GRGCYC	3 cut(s)	277, 670, 973
Eco31I	GGTCTC	2 cut(s)	389, 1916
Eco32I	GATATC	1 cut(s)	1983
Eco47I	GGWCC	3 cut(s)	913, 1188, 1482
Eco53kI	GAGCTC	1 cut(s)	275
Eco57I	CTGAAG	3 cut(s)	579, 1353, 1667
Eco88I	CYCGRG	2 cut(s)	135, 2096
EcoICRI	GAGCTC	1 cut(s)	275
EcoO109I	RGGNCCY	4 cut(s)	499, 913, 969, 970
EcoRII	CCWGG	1 cut(s)	1000
EcoRV	GATATC	1 cut(s)	1983
EcoT14I	CCWWGG	1 cut(s)	502
EcoT22I	ATGCAT	1 cut(s)	447
EcoT38I	GRGCYC	3 cut(s)	277, 670, 973
ErhI	CCWWGG	1 cut(s)	502
Esp3I	CGTCTC	1 cut(s)	237
FaeI	CATG	6 cut(s)	329, 439, 449, 1120, 2050, 2183
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	6 cut(s)	152, 413, 926, 1201, 1792, 1955
FatI	CATG	6 cut(s)	325, 435, 445, 1116, 2046, 2179
FauI	CCCGC	1 cut(s)	1809
FauNDI	CATATG	1 cut(s)	1498
FbaI	TGATCA	1 cut(s)	928
FblI	GTMKAC	2 cut(s)	73, 1244
FokI	GGATG	6 cut(s)	31, 103, 1196, 1235, 1832, 2063
FriOI	GRGCYC	3 cut(s)	277, 670, 973
FspBI	CTAG	7 cut(s)	150, 881, 974, 1037, 1409, 1571, 2135
GlaI	GCGC	2 cut(s)	2055, 2083
GsaI	CCCAGC	2 cut(s)	666, 1482
GsuI	CTGGAG	2 cut(s)	1151, 1898
HaeIII	GGCC	5 cut(s)	501, 971, 1641, 1787, 2016
HapII	CCGG	3 cut(s)	81, 694, 897
HgaI	GACGC	2 cut(s)	181, 414
HhaI	GCGC	2 cut(s)	2056, 2084
Hin1I	GRCGYC	1 cut(s)	406
Hin1II	CATG	6 cut(s)	329, 439, 449, 1120, 2050, 2183
Hin6I	GCGC	2 cut(s)	2054, 2082
HinP1I	GCGC	2 cut(s)	2054, 2082
HincII	GTYRAC	2 cut(s)	1245, 1717
HindII	GTYRAC	2 cut(s)	1245, 1717
HindIII	AAGCTT	4 cut(s)	1801, 1923, 1975, 2038
HpaII	CCGG	3 cut(s)	81, 694, 897
HphI	GGTGA	4 cut(s)	95, 194, 1067, 1073
Hpy166II	GTNNAC	5 cut(s)	74, 458, 1245, 1717, 1892
Hpy188I	TCNGA	9 cut(s)	121, 598, 1216, 1306, 1312, 1333, 1578, 1698, 2187
Hpy8I	GTNNAC	5 cut(s)	74, 458, 1245, 1717, 1892
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	4 cut(s)	279, 329, 1052, 1936
HpyCH4III	ACNGT	9 cut(s)	510, 553, 619, 779, 1212, 1536, 1555, 1605, 2007
HpyCH4IV	ACGT	2 cut(s)	76, 1968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	165, 1205, 1343, 1508
HpyF3I	CTNAG	9 cut(s)	9, 145, 225, 1419, 1548, 1708, 1824, 1905, 2000
HpySE526I	ACGT	2 cut(s)	76, 1968
Hsp92I	GRCGYC	1 cut(s)	406
Hsp92II	CATG	6 cut(s)	329, 439, 449, 1120, 2050, 2183
HspAI	GCGC	2 cut(s)	2054, 2082
KflI	GGGWCCC	1 cut(s)	913
Ksp22I	TGATCA	1 cut(s)	928
Kzo9I	GATC	5 cut(s)	928, 1292, 1573, 1591, 2187
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	673, 2188
LweI	GCATC	8 cut(s)	380, 778, 1534, 1810, 1860, 2041, 2107, 2135
MaeI	CTAG	7 cut(s)	150, 881, 974, 1037, 1409, 1571, 2135
MaeII	ACGT	2 cut(s)	76, 1968
MaeIII	GTNAC	5 cut(s)	305, 636, 1046, 1137, 1297
MalI	GATC	5 cut(s)	930, 1294, 1575, 1593, 2189
MboI	GATC	5 cut(s)	928, 1292, 1573, 1591, 2187
MhlI	GDGCHC	3 cut(s)	277, 670, 973
MlsI	TGGCCA	2 cut(s)	1787, 2016
MluI	ACGCGT	1 cut(s)	1197
MluNI	TGGCCA	2 cut(s)	1787, 2016
MlyI	GAGTC	2 cut(s)	116, 236
MmeI	TCCRAC	4 cut(s)	33, 144, 695, 1413
Mox20I	TGGCCA	2 cut(s)	1787, 2016
Mph1103I	ATGCAT	1 cut(s)	447
MroXI	GAANNNNTTC	3 cut(s)	60, 996, 2196
MscI	TGGCCA	2 cut(s)	1787, 2016
MseI	TTAA	6 cut(s)	42, 92, 1100, 1284, 1466, 1730
MslI	CAYNNNNRTG	1 cut(s)	440
Msp20I	TGGCCA	2 cut(s)	1787, 2016
MspA1I	CMGCKG	2 cut(s)	1645, 1988
MspI	CCGG	3 cut(s)	81, 694, 897
MspR9I	CCNGG	1 cut(s)	1002
Mva1269I	GAATGC	3 cut(s)	1125, 1657, 1879
MvaI	CCWGG	1 cut(s)	1002
MvnI	CGCG	2 cut(s)	175, 1199
MwoI	GCNNNNNNNGC	4 cut(s)	165, 1205, 1343, 1508
NdeI	CATATG	1 cut(s)	1498
NdeII	GATC	5 cut(s)	928, 1292, 1573, 1591, 2187
NlaIII	CATG	6 cut(s)	329, 439, 449, 1120, 2050, 2183
NlaIV	GGNNCC	6 cut(s)	669, 914, 915, 971, 1189, 1483
NmeAIII	GCCGAG	1 cut(s)	2170
NmuCI	GTSAC	1 cut(s)	1297
NsiI	ATGCAT	1 cut(s)	447
NspI	RCATGY	2 cut(s)	449, 2183
NspV	TTCGAA	1 cut(s)	1148
PaeI	GCATGC	1 cut(s)	449
PciSI	GCTCTTC	1 cut(s)	327
PctI	GAATGC	3 cut(s)	1125, 1657, 1879
PdmI	GAANNNNTTC	3 cut(s)	60, 996, 2196
PfoI	TCCNGGA	1 cut(s)	1000
Ple19I	CGATCG	1 cut(s)	2190
PleI	GAGTC	2 cut(s)	116, 235
PpsI	GAGTC	2 cut(s)	116, 235
PpuMI	RGGWCCY	1 cut(s)	913
Psp124BI	GAGCTC	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	913
Psp6I	CCWGG	1 cut(s)	1000
PspFI	CCCAGC	2 cut(s)	662, 1478
PspGI	CCWGG	1 cut(s)	1000
PspN4I	GGNNCC	6 cut(s)	669, 914, 915, 971, 1189, 1483
PspOMI	GGGCCC	1 cut(s)	969
PspPI	GGNCC	6 cut(s)	499, 913, 969, 970, 1188, 1482
PspPPI	RGGWCCY	1 cut(s)	913
PsrI	GAACNNNNNNTAC	2 cut(s)	90, 122
PstNI	CAGNNNCTG	1 cut(s)	317
PvuI	CGATCG	1 cut(s)	2190
PvuII	CAGCTG	1 cut(s)	1645
RsaI	GTAC	4 cut(s)	776, 1202, 2090, 2108
RsaNI	GTAC	4 cut(s)	775, 1201, 2089, 2107
RseI	CAYNNNNRTG	1 cut(s)	440
SacI	GAGCTC	1 cut(s)	277
SalI	GTCGAC	1 cut(s)	1243
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	6 cut(s)	42, 92, 1100, 1284, 1466, 1730
Sau3AI	GATC	5 cut(s)	928, 1292, 1573, 1591, 2187
Sau96I	GGNCC	6 cut(s)	499, 913, 969, 970, 1188, 1482
SchI	GAGTC	2 cut(s)	116, 236
ScrFI	CCNGG	1 cut(s)	1002
SduI	GDGCHC	3 cut(s)	277, 670, 973
SfaNI	GCATC	8 cut(s)	380, 778, 1534, 1810, 1860, 2041, 2107, 2135
SfcI	CTRYAG	2 cut(s)	618, 1884
SfuI	TTCGAA	1 cut(s)	1148
SinI	GGWCC	3 cut(s)	913, 1188, 1482
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	2 cut(s)	290, 1472
SmoI	CTYRAG	2 cut(s)	290, 1472
SphI	GCATGC	1 cut(s)	449
SsiI	CCGC	3 cut(s)	175, 1816, 1986
SspI	AATATT	2 cut(s)	1096, 1518
SspMI	CTAG	7 cut(s)	150, 881, 974, 1037, 1409, 1571, 2135
SstI	GAGCTC	1 cut(s)	277
StyD4I	CCNGG	1 cut(s)	1000
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	9 cut(s)	510, 553, 619, 779, 1212, 1536, 1555, 1605, 2007
TaiI	ACGT	2 cut(s)	79, 1971
TaqI	TCGA	9 cut(s)	170, 216, 385, 1108, 1148, 1244, 1956, 2190, 2200
TatI	WGTACW	2 cut(s)	774, 2106
Tru1I	TTAA	6 cut(s)	42, 92, 1100, 1284, 1466, 1730
Tru9I	TTAA	6 cut(s)	42, 92, 1100, 1284, 1466, 1730
TscAI	CASTG	6 cut(s)	166, 556, 784, 1165, 1215, 1492
TseFI	GTSAC	1 cut(s)	1297
Tsp45I	GTSAC	1 cut(s)	1297
TspDTI	ATGAA	7 cut(s)	105, 117, 314, 383, 1388, 1528, 1914
TspRI	CASTG	6 cut(s)	166, 556, 784, 1165, 1215, 1492
VpaK11BI	GGWCC	3 cut(s)	913, 1188, 1482
XapI	RAATTY	4 cut(s)	60, 755, 887, 1165
XbaI	TCTAGA	2 cut(s)	1408, 1570
XceI	RCATGY	2 cut(s)	449, 2183
XmiI	GTMKAC	2 cut(s)	73, 1244
XmnI	GAANNNNTTC	3 cut(s)	60, 996, 2196
XspI	CTAG	7 cut(s)	150, 881, 974, 1037, 1409, 1571, 2135
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.