Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001424

Physical Location & Seq

Genomic Coordinates Forward (+)

15418799 .. 15421320

Gene Structure 2522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g18670.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAGAACTAAGAATTGGATGAGTAAGAGAAGATTCAGCATTAAAGGGAGGTTGGAAAAAATGCTAAAGTGTATACGTTCCGCTGAGCAGTTAAGGTTAGATGAAGTTCCTCATTCATCCGACTCCCTTGCTACTCGGGACTACTCAGCTAGTGGTGGCACTGGCTACTCATCGCGGACGGGTGAGGTAGAAACAAAGGTGGATAACAGCAATATCGAAGAAGCTGAGTCGTCTCTGCGAGAGAGTGGTTATTTGAACTATGAGGAAGCAAGAGCTCTATTAGGAAGGCTTGAGTATCAAAAAGGTAACACAGAAGCTGCTCTTCATGTATTTGAAGGAATTGACATTGCTGGTGTGATTCCCAAGATGAAAGTCTCCATTTCTCGAAGATGCGAGACCAACAGACGCCGTTCTCAAAGCGATTCTGTCCCACCCATGTCAATGCATGCTGTTAGTTTACTCCTTGAAGCTATTTTTCTCAAAGCAAAGTCGTTGCAGGGCCTTGGAAGGTTTGGAGAAGCTGCTCAATCTTGCAAACTTATTTTGGACACTGTTGAATCTGCATTACCAGATGGCTTGCCCGAAAACTTTGCTTCAGATTGTAAATTACAAGAGACTGTAGGTAAAGCTGTTGAGTTACTTCCAGAGTTGTGGATACTTGCTGGGGCTCCCCAAGAAGCTATCTTATCATACCGGCAGGCTCTCCTCTATCGTTGGAATCTTGACATTGAACTTGCTTCAAAGATGGAAAAAGAATTTGCAGTTTTTCTCCTGTACAGTGGTTGTGATGCAAACCCTCCAAATCTCCGTTCACAGATGGAAAGCTCTTTTGTGCCAAGAAACAATATAGAAGAGGCTATTCTGCTGTTGTTGGTTCTACTAGGAAAATTTGGTGCTGGAACAATTGAATGGGACCCATCAATCCTTGATCGATCTTTCTTTTGCCTTGTCCGTTTCAGGGAAAGTGAGGGCCCTAGCCCATCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016310 GO:0019637 GO:0030258 GO:0033036 GO:0034613 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0071944 GO:0072657 GO:0072659 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_8

Protein Analysis

330

Amino Acids

36.65

Weight (kDa)

5.69

Isoelectric Point (pI)

68.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28600 AT4G28600 AT4G28600
fragaria_vesca	FvH4_2g20940 FvH4_2g20940 FvH4_2g20940 FvH4_2g20940 FvH4_2g20940 FvH4_4g04130 FvH4_4g04130 FvH4_4g04130 FvH4_4g04130 FvH4_4g04130 FvH4_4g04130
malus_domestica	MD05G1192700.v1.1 MD10G1179200.v1.1 MD13G1217700.v1.1 MD16G1222900.v1.1
prunus_persica	Prupe.1G044600_v2.0.a1 Prupe.1G044600_v2.0.a1 Prupe.8G219000_v2.0.a1 Prupe.8G219000_v2.0.a1 Prupe.8G219000_v2.0.a1
pyrus_communis	pycom10g15540 pycom13g19100 pycom16g18670 pycom16g18680
rosa_chinensis	RchiOBHm_Chr4g0394501 RchiOBHm_Chr6g0287321
rosa_laevigata	RLG00000009693 RLG00000012501
rosa_multiflora	Rmu_sc0005424.1_g000020 Rmu_sc0007029.1_g000031
rosa_roxburghii	Rroxscaffold_5G00339560 Rroxscaffold_7G00181540
rosa_rugosa	Rorug03G0365300.1 Rorug03G0365400.1 Rorug03G0365500.1 Rorug06G0187000 Rorug06G0187100 Rorug06G0187100
rosa_samantha	Rh4AG052600 Rh4BG050400 Rh4CG056800 Rh4DG049500 Rh6AG298400 Rh6BG303800 Rh6CG306000 Rh6CG312100 Rh6DG295700
rosa_wichuraiana	Rw4G004240 Rw6G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	73
AccII	CGCG	1 cut(s)	175
AciI	CCGC	2 cut(s)	81, 175
AcsI	RAATTY	2 cut(s)	755, 887
AcuI	CTGAAG	1 cut(s)	579
AcyI	GRCGYC	1 cut(s)	406
AfaI	GTAC	1 cut(s)	776
AfiI	CCNNNNNNNGG	1 cut(s)	958
AgsI	TTSAA	7 cut(s)	256, 335, 467, 557, 731, 741, 908
AjuI	GAANNNNNNNTTGG	3 cut(s)	30, 793, 825
AluBI	AGCT	9 cut(s)	149, 224, 275, 317, 470, 521, 629, 680, 825
AluI	AGCT	9 cut(s)	149, 224, 275, 317, 470, 521, 629, 680, 825
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	4 cut(s)	237, 379, 389, 608
AlwNI	CAGNNNCTG	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	135
AoxI	GGCC	2 cut(s)	499, 970
ApaI	GGGCCC	1 cut(s)	974
ApeKI	GCWGC	2 cut(s)	317, 521
ApoI	RAATTY	2 cut(s)	755, 887
AspS9I	GGNCC	4 cut(s)	499, 913, 970, 971
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	913
BaeGI	GKGCMC	1 cut(s)	974
BanII	GRGCYC	3 cut(s)	277, 670, 974
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	304, 508
BccI	CCATC	5 cut(s)	566, 739, 811, 925, 988
BceAI	ACGGC	1 cut(s)	393
BcgI	CGANNNNNNTGC	4 cut(s)	110, 144, 572, 606
BciVI	GTATCC	1 cut(s)	648
BcoDI	GTCTC	4 cut(s)	237, 379, 389, 608
BfaI	CTAG	3 cut(s)	150, 881, 975
BfmI	CTRYAG	1 cut(s)	618
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	2 cut(s)	318, 522
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	2 cut(s)	319, 523
Bme18I	GGWCC	1 cut(s)	913
BmeT110I	CYCGRG	1 cut(s)	135
BmgT120I	GGNCC	4 cut(s)	499, 913, 970, 971
BmiI	GGNNCC	4 cut(s)	669, 914, 915, 972
BmsI	GCATC	2 cut(s)	380, 778
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	311
Bsa29I	ATCGAT	1 cut(s)	931
BsaHI	GRCGYC	1 cut(s)	406
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	1 cut(s)	958
Bse118I	RCCGGY	1 cut(s)	693
Bse1I	ACTGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	345
BseCI	ATCGAT	1 cut(s)	931
BseDI	CCNNGG	1 cut(s)	502
BseGI	GGATG	2 cut(s)	24, 116
BseLI	CCNNNNNNNGG	1 cut(s)	958
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	3 cut(s)	75, 159, 216
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	695
BseSI	GKGCMC	1 cut(s)	974
BseXI	GCAGC	2 cut(s)	304, 508
BseYI	CCCAGC	1 cut(s)	662
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	2 cut(s)	501, 972
BshVI	ATCGAT	1 cut(s)	931
BsiHKAI	GWGCWC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	694
BslFI	GGGAC	3 cut(s)	152, 413, 926
BslI	CCNNNNNNNGG	1 cut(s)	958
BsmAI	GTCTC	4 cut(s)	237, 379, 389, 608
BsmBI	CGTCTC	1 cut(s)	237
BsmFI	GGGAC	3 cut(s)	152, 413, 926
BsnI	GGCC	2 cut(s)	501, 972
Bso31I	GGTCTC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	135
Bsp120I	GGGCCC	1 cut(s)	970
Bsp1286I	GDGCHC	3 cut(s)	277, 670, 974
Bsp1407I	TGTACA	1 cut(s)	774
Bsp143I	GATC	2 cut(s)	928, 932
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	2 cut(s)	81, 175
BspANI	GGCC	2 cut(s)	501, 972
BspCNI	CTCAG	3 cut(s)	76, 158, 217
BspDI	ATCGAT	1 cut(s)	931
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	4 cut(s)	669, 914, 915, 972
BspQI	GCTCTTC	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	693
BsrGI	TGTACA	1 cut(s)	774
BsrI	ACTGG	1 cut(s)	166
BssAI	RCCGGY	1 cut(s)	693
BssECI	CCNNGG	1 cut(s)	502
BssMI	GATC	2 cut(s)	928, 932
BssNAI	GTATAC	1 cut(s)	74
BssNI	GRCGYC	1 cut(s)	406
BssT1I	CCWWGG	1 cut(s)	502
Bst1107I	GTATAC	1 cut(s)	74
Bst4CI	ACNGT	3 cut(s)	553, 619, 779
Bst6I	CTCTTC	2 cut(s)	327, 846
BstACI	GRCGYC	1 cut(s)	406
BstAUI	TGTACA	1 cut(s)	774
BstC8I	GCNNGC	3 cut(s)	447, 578, 699
BstDEI	CTNAG	4 cut(s)	9, 84, 145, 225
BstF5I	GGATG	2 cut(s)	24, 116
BstFNI	CGCG	1 cut(s)	175
BstKTI	GATC	2 cut(s)	931, 935
BstMAI	GTCTC	4 cut(s)	237, 379, 389, 608
BstMBI	GATC	2 cut(s)	928, 932
BstNSI	RCATGY	1 cut(s)	449
BstSFI	CTRYAG	1 cut(s)	618
BstSLI	GKGCMC	1 cut(s)	974
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	2 cut(s)	304, 508
BstXI	CCANNNNNNTGG	1 cut(s)	651
BstZ17I	GTATAC	1 cut(s)	74
Bsu15I	ATCGAT	1 cut(s)	931
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	2 cut(s)	501, 972
BsuTUI	ATCGAT	1 cut(s)	931
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	24, 116
BtsIMutI	CAGTG	3 cut(s)	159, 549, 784
Cac8I	GCNNGC	3 cut(s)	447, 578, 699
CaiI	CAGNNNCTG	1 cut(s)	317
Cfr10I	RCCGGY	1 cut(s)	693
Cfr13I	GGNCC	4 cut(s)	499, 913, 970, 971
ClaI	ATCGAT	1 cut(s)	931
CseI	GACGC	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	775
CviAII	CATG	3 cut(s)	326, 436, 446
CviQI	GTAC	1 cut(s)	775
DdeI	CTNAG	4 cut(s)	9, 84, 145, 225
DpnI	GATC	2 cut(s)	930, 934
DpnII	GATC	2 cut(s)	928, 932
Eam1104I	CTCTTC	2 cut(s)	327, 846
EarI	CTCTTC	2 cut(s)	327, 846
Ecl136II	GAGCTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	502
Eco24I	GRGCYC	3 cut(s)	277, 670, 974
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	913
Eco53kI	GAGCTC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	579
Eco88I	CYCGRG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	275
EcoO109I	RGGNCCY	4 cut(s)	499, 913, 970, 971
EcoT14I	CCWWGG	1 cut(s)	502
EcoT22I	ATGCAT	1 cut(s)	447
EcoT38I	GRGCYC	3 cut(s)	277, 670, 974
ErhI	CCWWGG	1 cut(s)	502
Esp3I	CGTCTC	1 cut(s)	237
FaeI	CATG	3 cut(s)	329, 439, 449
FaiI	YATR	7 cut(s)	74, 261, 327, 437, 447, 691, 848
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	3 cut(s)	152, 413, 926
FatI	CATG	3 cut(s)	325, 435, 445
FblI	GTMKAC	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	318, 522
FokI	GGATG	2 cut(s)	31, 103
FriOI	GRGCYC	3 cut(s)	277, 670, 974
Fsp4HI	GCNGC	2 cut(s)	318, 522
FspBI	CTAG	3 cut(s)	150, 881, 975
GluI	GCNGC	2 cut(s)	318, 522
GsaI	CCCAGC	1 cut(s)	666
HaeIII	GGCC	2 cut(s)	501, 972
HapII	CCGG	1 cut(s)	694
HgaI	GACGC	1 cut(s)	414
Hin1I	GRCGYC	1 cut(s)	406
Hin1II	CATG	3 cut(s)	329, 439, 449
HinfI	GANTC	7 cut(s)	33, 122, 227, 358, 422, 557, 718
HpaII	CCGG	1 cut(s)	694
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	3 cut(s)	74, 458, 812
Hpy188I	TCNGA	2 cut(s)	121, 598
Hpy188III	TCNNGA	4 cut(s)	137, 384, 644, 722
Hpy8I	GTNNAC	3 cut(s)	74, 458, 812
HpyAV	CCTTC	3 cut(s)	279, 329, 501
HpyCH4III	ACNGT	3 cut(s)	553, 619, 779
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	6 cut(s)	445, 496, 534, 563, 761, 791
HpyF3I	CTNAG	4 cut(s)	9, 84, 145, 225
HpySE526I	ACGT	1 cut(s)	76
Hsp92I	GRCGYC	1 cut(s)	406
Hsp92II	CATG	3 cut(s)	329, 439, 449
KflI	GGGWCCC	1 cut(s)	913
Kzo9I	GATC	2 cut(s)	928, 932
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	1 cut(s)	673
Lsp1109I	GCAGC	2 cut(s)	304, 508
LweI	GCATC	2 cut(s)	380, 778
MaeI	CTAG	3 cut(s)	150, 881, 975
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	2 cut(s)	305, 636
MalI	GATC	2 cut(s)	930, 934
MboI	GATC	2 cut(s)	928, 932
MboII	GAAGA	5 cut(s)	42, 230, 314, 399, 863
MfeI	CAATTG	1 cut(s)	903
MhlI	GDGCHC	3 cut(s)	277, 670, 974
MluCI	AATT	6 cut(s)	13, 339, 605, 755, 887, 903
MlyI	GAGTC	2 cut(s)	116, 236
MmeI	TCCRAC	3 cut(s)	33, 144, 695
MnlI	CCTC	8 cut(s)	42, 120, 178, 256, 716, 807, 847, 961
Mph1103I	ATGCAT	1 cut(s)	447
MseI	TTAA	2 cut(s)	42, 92
MslI	CAYNNNNRTG	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	1 cut(s)	694
MunI	CAATTG	1 cut(s)	903
MvnI	CGCG	1 cut(s)	175
NdeII	GATC	2 cut(s)	928, 932
NlaIII	CATG	3 cut(s)	329, 439, 449
NlaIV	GGNNCC	4 cut(s)	669, 914, 915, 972
NsiI	ATGCAT	1 cut(s)	447
NspI	RCATGY	1 cut(s)	449
PaeI	GCATGC	1 cut(s)	449
PciSI	GCTCTTC	1 cut(s)	327
PfeI	GAWTC	5 cut(s)	33, 358, 422, 557, 718
PkrI	GCNGC	2 cut(s)	319, 523
PleI	GAGTC	2 cut(s)	116, 235
PpsI	GAGTC	2 cut(s)	116, 235
PpuMI	RGGWCCY	1 cut(s)	913
Psp124BI	GAGCTC	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	913
PspFI	CCCAGC	1 cut(s)	662
PspN4I	GGNNCC	4 cut(s)	669, 914, 915, 972
PspOMI	GGGCCC	1 cut(s)	970
PspPI	GGNCC	4 cut(s)	499, 913, 970, 971
PspPPI	RGGWCCY	1 cut(s)	913
PstNI	CAGNNNCTG	1 cut(s)	317
RsaI	GTAC	1 cut(s)	776
RsaNI	GTAC	1 cut(s)	775
RseI	CAYNNNNRTG	1 cut(s)	440
SacI	GAGCTC	1 cut(s)	277
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	42, 92
SatI	GCNGC	2 cut(s)	318, 522
Sau3AI	GATC	2 cut(s)	928, 932
Sau96I	GGNCC	4 cut(s)	499, 913, 970, 971
SchI	GAGTC	2 cut(s)	116, 236
SduI	GDGCHC	3 cut(s)	277, 670, 974
SfaNI	GCATC	2 cut(s)	380, 778
SfcI	CTRYAG	1 cut(s)	618
SinI	GGWCC	1 cut(s)	913
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	449
Sse9I	AATT	6 cut(s)	13, 339, 605, 755, 887, 903
SsiI	CCGC	2 cut(s)	81, 175
SspMI	CTAG	3 cut(s)	150, 881, 975
SstI	GAGCTC	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	3 cut(s)	553, 619, 779
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	3 cut(s)	216, 385, 931
TasI	AATT	6 cut(s)	13, 339, 605, 755, 887, 903
TatI	WGTACW	1 cut(s)	774
TfiI	GAWTC	5 cut(s)	33, 358, 422, 557, 718
Tru1I	TTAA	2 cut(s)	42, 92
Tru9I	TTAA	2 cut(s)	42, 92
TscAI	CASTG	3 cut(s)	166, 556, 784
TseI	GCWGC	2 cut(s)	317, 521
TspDTI	ATGAA	4 cut(s)	105, 117, 314, 383
TspGWI	ACGGA	2 cut(s)	797, 941
TspRI	CASTG	3 cut(s)	166, 556, 784
VpaK11BI	GGWCC	1 cut(s)	913
XapI	RAATTY	2 cut(s)	755, 887
XceI	RCATGY	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	73
XspI	CTAG	3 cut(s)	150, 881, 975
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.