Rh4DG049500

Tetratricopeptide repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
7965192 .. 7971112
5921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG049500.1

Sequence Viewer

Length: 2028 bp
ATGAAAGCTAAGAAGTGGATGAATAAAAGAAGATTCAGCATCAGAGGAAGGTTGCAAAAGATGCTGAAGTGTATGCGCTCAGGGGAGCAATTTAGGGTAGAGGATATACCTCATTCATCTGACTCCCTGGCTACTAGAGACTATTCAGCCAGCGGGTACTCATCTCGAACAGGTGAGGTAGAAACAAAGGTGGATAATAGCAATATTGAAGAAGCTGAGTCCTCTCTGCGTGAAAGTGGTTATCTGAACTATGAGGAAGCAAGAGCTCTATTAGGAAGGCTCGAATATCAAAAAGGTAACACACAAGCTGCTCTTCAAGTATTTGAAGGAATAGACATTGGTGCTGTGATACCCAAGATAAAAGTCTCCATTTCTAAAAGATGCGAGTCCAACAGACGTCGTTCTCAAAGTGATGCTGTTCCACCCATGTCTATGCATGCTGTTAGTTTGCTCCTTGAAGCTGTTTTGCTCAAAGCAAAATCGTTACAGGGACTTGGAAGGTTTGAAGAAGCTGCTCAATCATGCAAACTTATTTTGGACACTGTTGAAACTGCATTACCAGAGGGCTTGCCTGTAAATTTTGCTTCTGATTGTAAATTACAAGAGACTGTTGGTAAAGCCGTTGAGTTACTTCCAGAGTTGTGGATACTTTCTGGTGCTCCCCAAGAAGCTATCTTATCTTACCGGCAGGCTCTCCTCTATCATTGGAGTCTTGACGTTGAAACTACTTCAAAGATTGAAAAAGACTTTGCAGTTTTTCTACTGTACAGTGGTTGTGATGCAAACCCTCCGAATCTCCGTTCACAGATGGAAAGCTCCTTTGTGCCAAGAAATAATACAGAAGAGGCTGTTCTGCTGCTGCTGATTCTACTAAGGAAATTTATTGTTGGAAGGATTGGATGGGATCCATCAATCATTGAGCATCTTTCCTTTGCCTTGTCTGTTTCAGGGAAATTAAGGGATCTAGCCCATCACATTGAAGAATTGATCCCTGGTATTATGGGAAGGAAAGAAAGATATTTGACTCTAGCTCTGTGTTACTATGGGGAGGGTGAGAACTTGGTTGCTTTGAATCTTTTAAGGAATATTTTAAATGATCGAGAGAGCACATACTGCATTCTGGAATTATTACTTGCCTCCAAGATTTGCAGTGAAAATTTGGCTTGCATTGAGGATGGAATAAAATTCGCATGTAAAGCACTTTCAGAGTTGGATGGAAAATGCAACCAACTGCTAAGTATTGCAAATTGCTTACTGGGTGTTTCCTTGTCGGTTAAATCCAGATCAGTTTCTTCTGATTCTGAAAGGATTTTGAAGCAGTCTGAAGCATTACAAGCACTAGAAACTGCTGAGACAATCATGAGAGAGAGGAATCCATACATTGTATCTCATCTTTGTCTGGAACATGCCGAGCAAAGGAAGTTGGATATTGCACTTTATTATGCAAAGGAGCTATTAAAACTTGAGGCCGGGTCTAGCATAAAAGCATATATTCTTTTGGCACGAATATTGTCAGCTCAAAAAAGATTCATTGATGCTGAGACTGTAATCAATGCTGCTCTCGATCAGACAGGGAAGTGGGATCAAGGAGAACTGTTGCGAACTAAAGCAAAACTCCAGATTGCACAGGGCCAGCTGAAGAATGCCATAGAAACATATACACATCTTCTGGCTGTTCTTCAAGTTCGGAATAAAAACTTGGGTGTTGAGAAGAGGCTTCTAAAGAGTAGGAGAAACCATAATCGAAGCTTGGAAATGGAGACATGGCACGATTTAGCTAATTTATACACAAATTTGTCACAATGGCGGGATGCTGAGGTCTGTCTTTCAAAATCCCAGGCTATCAATCCTCATTCTGCTTCCAGATGGCATTGTACAGGTATATTGCTGTTTCAGAAACTGCACCATACATTGATAAATAATACTAGTACGCTTTCTTTGGTCTGTTTAATTTATATTAGACATTGGTTGCTGTACATACCGCTAATTTGTCTCTGGAAAGTGGCAATACTGAATAACAAGTCTTGA

Protein Analysis

675

Amino Acids

76.08

Weight (kDa)

8.58

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 400
AciI CCGC 3 cut(s) 153, 1807, 1982
AclWI GGATC 5 cut(s) 899, 912, 969, 982, 1590
AcsI RAATTY 5 cut(s) 577, 878, 1156, 1184, 1792
AcuI CTGAAG 3 cut(s) 86, 1344, 1658
AcyI GRCGYC 1 cut(s) 397
AfaI GTAC 5 cut(s) 158, 767, 1876, 1930, 1976
AfiI CCNNNNNNNGG 1 cut(s) 1416
AhlI ACTAGT 1 cut(s) 1925
AjnI CCWGG 3 cut(s) 126, 991, 1836
AjuI GAANNNNNNNTTGG 2 cut(s) 1682, 1714
Alw21I GWGCWC 3 cut(s) 268, 661, 1109
Alw26I GTCTC 7 cut(s) 132, 370, 599, 1346, 1535, 1754, 1997
AlwI GGATC 5 cut(s) 899, 912, 969, 982, 1590
AlwNI CAGNNNCTG 1 cut(s) 1900
AoxI GGCC 2 cut(s) 1467, 1630
ApeKI GCWGC 5 cut(s) 308, 512, 856, 859, 1556
ApoI RAATTY 5 cut(s) 577, 878, 1156, 1184, 1792
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 1630
AsuC2I CCSGG 1 cut(s) 1471
AsuHPI GGTGA 2 cut(s) 185, 1064
BamHI GGATCC 1 cut(s) 904
BanII GRGCYC 1 cut(s) 268
Bbv12I GWGCWC 3 cut(s) 268, 661, 1109
BbvCI CCTCAGC 1 cut(s) 1815
BbvI GCAGC 5 cut(s) 295, 499, 843, 846, 1543
BccI CCATC 7 cut(s) 802, 894, 916, 978, 1169, 1208, 1860
BceAI ACGGC 1 cut(s) 605
BciT130I CCWGG 3 cut(s) 128, 993, 1838
BciVI GTATCC 1 cut(s) 639
BcnI CCSGG 1 cut(s) 1471
BcoDI GTCTC 7 cut(s) 132, 370, 599, 1346, 1535, 1754, 1997
BcuI ACTAGT 1 cut(s) 1925
BfaI CTAG 6 cut(s) 135, 965, 1028, 1340, 1476, 1926
BfuI GTATCC 1 cut(s) 639
BisI GCNGC 5 cut(s) 309, 513, 857, 860, 1557
BlsI GCNGC 5 cut(s) 310, 514, 858, 861, 1558
Bme1390I CCNGG 4 cut(s) 128, 993, 1471, 1838
BmgT120I GGNCC 1 cut(s) 1630
BmiI GGNNCC 1 cut(s) 906
BmrFI CCNGG 4 cut(s) 128, 993, 1471, 1838
BmrI ACTGGG 1 cut(s) 1265
BmsI GCATC 8 cut(s) 48, 51, 371, 403, 769, 931, 1525, 1801
BmuI ACTGGG 1 cut(s) 1265
BpmI CTGGAG 1 cut(s) 1601
Bpu10I CCTNAGC 2 cut(s) 79, 1815
BpuEI CTTGAG 1 cut(s) 1484
BpuMI CCSGG 1 cut(s) 1471
BsaHI GRCGYC 1 cut(s) 397
BsaJI CCNNGG 3 cut(s) 126, 991, 1836
Bsc4I CCNNNNNNNGG 1 cut(s) 1416
Bse118I RCCGGY 1 cut(s) 684
Bse1I ACTGG 1 cut(s) 1260
BseBI CCWGG 3 cut(s) 128, 993, 1838
BseDI CCNNGG 3 cut(s) 126, 991, 1836
BseGI GGATG 5 cut(s) 24, 905, 1180, 1219, 1816
BseLI CCNNNNNNNGG 1 cut(s) 1416
BseMII CTCAG 5 cut(s) 93, 207, 1341, 1530, 1806
BseNI ACTGG 1 cut(s) 1260
BseRI GAGGAG 1 cut(s) 686
BseXI GCAGC 5 cut(s) 295, 499, 843, 846, 1543
BsgI GTGCAG 1 cut(s) 1886
BshFI GGCC 2 cut(s) 1469, 1632
BsiHKAI GWGCWC 3 cut(s) 268, 661, 1109
BsiSI CCGG 2 cut(s) 685, 1470
BslFI GGGAC 1 cut(s) 504
BslI CCNNNNNNNGG 1 cut(s) 1416
BsmAI GTCTC 7 cut(s) 132, 370, 599, 1346, 1535, 1754, 1997
BsmFI GGGAC 1 cut(s) 504
BsmI GAATGC 2 cut(s) 1116, 1648
BsnI GGCC 2 cut(s) 1469, 1632
Bsp1286I GDGCHC 3 cut(s) 268, 661, 1109
Bsp1407I TGTACA 3 cut(s) 765, 1874, 1974
Bsp143I GATC 7 cut(s) 904, 961, 987, 1096, 1283, 1564, 1582
BspACI CCGC 3 cut(s) 153, 1807, 1982
BspANI GGCC 2 cut(s) 1469, 1632
BspCNI CTCAG 5 cut(s) 92, 208, 1342, 1531, 1807
BspHI TCATGA 1 cut(s) 1359
BspLI GGNNCC 1 cut(s) 906
BspPI GGATC 5 cut(s) 899, 912, 969, 982, 1590
BspQI GCTCTTC 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 684
BsrGI TGTACA 3 cut(s) 765, 1874, 1974
BsrI ACTGG 1 cut(s) 1260
BssAI RCCGGY 1 cut(s) 684
BssECI CCNNGG 3 cut(s) 126, 991, 1836
BssMI GATC 7 cut(s) 904, 961, 987, 1096, 1283, 1564, 1582
BssNI GRCGYC 1 cut(s) 397
Bst2UI CCWGG 3 cut(s) 128, 993, 1838
Bst4CI ACNGT 6 cut(s) 544, 610, 765, 770, 1546, 1596
Bst6I CTCTTC 3 cut(s) 318, 837, 1706
BstACI GRCGYC 1 cut(s) 397
BstAPI GCANNNNNTGC 2 cut(s) 61, 1113
BstAUI TGTACA 3 cut(s) 765, 1874, 1974
BstC8I GCNNGC 6 cut(s) 151, 438, 569, 690, 1165, 1634
BstDEI CTNAG 8 cut(s) 9, 79, 216, 872, 1235, 1350, 1539, 1815
BstF5I GGATG 5 cut(s) 24, 905, 1180, 1219, 1816
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 7 cut(s) 907, 964, 990, 1099, 1286, 1567, 1585
BstMAI GTCTC 7 cut(s) 132, 370, 599, 1346, 1535, 1754, 1997
BstMBI GATC 7 cut(s) 904, 961, 987, 1096, 1283, 1564, 1582
BstMWI GCNNNNNNNGC 4 cut(s) 61, 1113, 1196, 1334
BstNI CCWGG 3 cut(s) 128, 993, 1838
BstNSI RCATGY 3 cut(s) 440, 1194, 1409
BstSCI CCNGG 4 cut(s) 126, 991, 1469, 1836
BstV1I GCAGC 5 cut(s) 295, 499, 843, 846, 1543
BstX2I RGATCY 2 cut(s) 904, 961
BstXI CCANNNNNNTGG 1 cut(s) 642
BstYI RGATCY 2 cut(s) 904, 961
BsuI GTATCC 1 cut(s) 639
BsuRI GGCC 2 cut(s) 1469, 1632
BtsCI GGATG 5 cut(s) 24, 905, 1180, 1219, 1816
BtsI GCAGTG 1 cut(s) 1156
BtsIMutI CAGTG 3 cut(s) 540, 775, 1156
Cac8I GCNNGC 6 cut(s) 151, 438, 569, 690, 1165, 1634
CaiI CAGNNNCTG 1 cut(s) 1900
CciI TCATGA 1 cut(s) 1359
CfoI GCGC 1 cut(s) 78
Cfr10I RCCGGY 1 cut(s) 684
Cfr13I GGNCC 1 cut(s) 1630
Csp6I GTAC 5 cut(s) 157, 766, 1875, 1929, 1975
CviAII CATG 7 cut(s) 427, 437, 522, 1191, 1360, 1406, 1764
CviQI GTAC 5 cut(s) 157, 766, 1875, 1929, 1975
DdeI CTNAG 8 cut(s) 9, 79, 216, 872, 1235, 1350, 1539, 1815
DpnI GATC 7 cut(s) 906, 963, 989, 1098, 1285, 1566, 1584
DpnII GATC 7 cut(s) 904, 961, 987, 1096, 1283, 1564, 1582
DraI TTTAAA 1 cut(s) 1092
Eam1104I CTCTTC 3 cut(s) 318, 837, 1706
EarI CTCTTC 3 cut(s) 318, 837, 1706
Ecl136II GAGCTC 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 266
Eco57I CTGAAG 3 cut(s) 86, 1344, 1658
EcoICRI GAGCTC 1 cut(s) 266
EcoRII CCWGG 3 cut(s) 126, 991, 1836
EcoT22I ATGCAT 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 268
FaeI CATG 7 cut(s) 430, 440, 525, 1194, 1363, 1409, 1767
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FaqI GGGAC 1 cut(s) 504
FatI CATG 7 cut(s) 426, 436, 521, 1190, 1359, 1405, 1763
FauI CCCGC 2 cut(s) 146, 1800
Fnu4HI GCNGC 5 cut(s) 309, 513, 857, 860, 1557
FokI GGATG 5 cut(s) 31, 912, 1187, 1226, 1823
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 5 cut(s) 309, 513, 857, 860, 1557
FspBI CTAG 6 cut(s) 135, 965, 1028, 1340, 1476, 1926
GlaI GCGC 1 cut(s) 77
GluI GCNGC 5 cut(s) 309, 513, 857, 860, 1557
GsuI CTGGAG 1 cut(s) 1601
HaeIII GGCC 2 cut(s) 1469, 1632
HapII CCGG 2 cut(s) 685, 1470
HhaI GCGC 1 cut(s) 78
Hin1I GRCGYC 1 cut(s) 397
Hin1II CATG 7 cut(s) 430, 440, 525, 1194, 1363, 1409, 1767
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 1747
HpaII CCGG 2 cut(s) 685, 1470
HphI GGTGA 2 cut(s) 185, 1064
Hpy166II GTNNAC 1 cut(s) 803
Hpy8I GTNNAC 1 cut(s) 803
Hpy99I CGWCG 1 cut(s) 402
HpyAV CCTTC 6 cut(s) 42, 270, 320, 492, 885, 999
HpyCH4III ACNGT 6 cut(s) 544, 610, 765, 770, 1546, 1596
HpyCH4IV ACGT 2 cut(s) 397, 717
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 1113, 1196, 1334
HpyF3I CTNAG 8 cut(s) 9, 79, 216, 872, 1235, 1350, 1539, 1815
HpySE526I ACGT 2 cut(s) 397, 717
Hsp92I GRCGYC 1 cut(s) 397
Hsp92II CATG 7 cut(s) 430, 440, 525, 1194, 1363, 1409, 1767
HspAI GCGC 1 cut(s) 76
Kzo9I GATC 7 cut(s) 904, 961, 987, 1096, 1283, 1564, 1582
LguI GCTCTTC 1 cut(s) 318
LmnI GCTCC 5 cut(s) 85, 456, 664, 821, 1450
Lsp1109I GCAGC 5 cut(s) 295, 499, 843, 846, 1543
LweI GCATC 8 cut(s) 48, 51, 371, 403, 769, 931, 1525, 1801
MaeI CTAG 6 cut(s) 135, 965, 1028, 1340, 1476, 1926
MaeII ACGT 2 cut(s) 397, 717
MaeIII GTNAC 5 cut(s) 296, 483, 627, 1037, 1797
MalI GATC 7 cut(s) 906, 963, 989, 1098, 1285, 1566, 1584
MboI GATC 7 cut(s) 904, 961, 987, 1096, 1283, 1564, 1582
MflI RGATCY 2 cut(s) 904, 961
MhlI GDGCHC 3 cut(s) 268, 661, 1109
MlyI GAGTC 5 cut(s) 116, 227, 395, 718, 1018
MmeI TCCRAC 4 cut(s) 414, 868, 1191, 1404
Mph1103I ATGCAT 1 cut(s) 438
MseI TTAA 6 cut(s) 956, 1079, 1091, 1275, 1457, 1949
MslI CAYNNNNRTG 1 cut(s) 431
MspA1I CMGCKG 2 cut(s) 153, 1636
MspI CCGG 2 cut(s) 685, 1470
MspR9I CCNGG 4 cut(s) 128, 993, 1471, 1838
Mva1269I GAATGC 2 cut(s) 1116, 1648
MvaI CCWGG 3 cut(s) 128, 993, 1838
MwoI GCNNNNNNNGC 4 cut(s) 61, 1113, 1196, 1334
NciI CCSGG 1 cut(s) 1471
NdeII GATC 7 cut(s) 904, 961, 987, 1096, 1283, 1564, 1582
NlaIII CATG 7 cut(s) 430, 440, 525, 1194, 1363, 1409, 1767
NlaIV GGNNCC 1 cut(s) 906
NmeAIII GCCGAG 1 cut(s) 1435
NmuCI GTSAC 1 cut(s) 1797
NsiI ATGCAT 1 cut(s) 438
NspI RCATGY 3 cut(s) 440, 1194, 1409
PaeI GCATGC 1 cut(s) 440
PagI TCATGA 1 cut(s) 1359
PciSI GCTCTTC 1 cut(s) 318
PctI GAATGC 2 cut(s) 1116, 1648
PfeI GAWTC 7 cut(s) 33, 793, 865, 1072, 1298, 1372, 1527
PkrI GCNGC 5 cut(s) 310, 514, 858, 861, 1558
PleI GAGTC 5 cut(s) 116, 226, 394, 717, 1018
PpsI GAGTC 5 cut(s) 116, 226, 394, 717, 1018
Psp124BI GAGCTC 1 cut(s) 268
Psp6I CCWGG 3 cut(s) 126, 991, 1836
PspGI CCWGG 3 cut(s) 126, 991, 1836
PspN4I GGNNCC 1 cut(s) 906
PspPI GGNCC 1 cut(s) 1630
PstNI CAGNNNCTG 1 cut(s) 1900
PsuI RGATCY 2 cut(s) 904, 961
PvuII CAGCTG 1 cut(s) 1636
RsaI GTAC 5 cut(s) 158, 767, 1876, 1930, 1976
RsaNI GTAC 5 cut(s) 157, 766, 1875, 1929, 1975
RseI CAYNNNNRTG 1 cut(s) 431
SacI GAGCTC 1 cut(s) 268
SapI GCTCTTC 1 cut(s) 318
SaqAI TTAA 6 cut(s) 956, 1079, 1091, 1275, 1457, 1949
SatI GCNGC 5 cut(s) 309, 513, 857, 860, 1557
Sau3AI GATC 7 cut(s) 904, 961, 987, 1096, 1283, 1564, 1582
Sau96I GGNCC 1 cut(s) 1630
SchI GAGTC 5 cut(s) 116, 227, 395, 718, 1018
ScrFI CCNGG 4 cut(s) 128, 993, 1471, 1838
SduI GDGCHC 3 cut(s) 268, 661, 1109
SfaNI GCATC 8 cut(s) 48, 51, 371, 403, 769, 931, 1525, 1801
SmiMI CAYNNNNRTG 1 cut(s) 431
SmlI CTYRAG 1 cut(s) 1463
SmoI CTYRAG 1 cut(s) 1463
SpeI ACTAGT 1 cut(s) 1925
SphI GCATGC 1 cut(s) 440
SsiI CCGC 3 cut(s) 153, 1807, 1982
SspI AATATT 3 cut(s) 205, 1087, 1509
SspMI CTAG 6 cut(s) 135, 965, 1028, 1340, 1476, 1926
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 4 cut(s) 126, 991, 1469, 1836
TaaI ACNGT 6 cut(s) 544, 610, 765, 770, 1546, 1596
TaiI ACGT 2 cut(s) 400, 720
TaqI TCGA 5 cut(s) 166, 282, 1099, 1563, 1744
TatI WGTACW 3 cut(s) 765, 1874, 1974
TfiI GAWTC 7 cut(s) 33, 793, 865, 1072, 1298, 1372, 1527
Tru1I TTAA 6 cut(s) 956, 1079, 1091, 1275, 1457, 1949
Tru9I TTAA 6 cut(s) 956, 1079, 1091, 1275, 1457, 1949
TscAI CASTG 3 cut(s) 547, 775, 1156
TseFI GTSAC 1 cut(s) 1797
TseI GCWGC 5 cut(s) 308, 512, 856, 859, 1556
Tsp45I GTSAC 1 cut(s) 1797
TspDTI ATGAA 4 cut(s) 17, 35, 105, 1519
TspGWI ACGGA 1 cut(s) 788
TspRI CASTG 3 cut(s) 547, 775, 1156
XapI RAATTY 5 cut(s) 577, 878, 1156, 1184, 1792
XceI RCATGY 3 cut(s) 440, 1194, 1409
XspI CTAG 6 cut(s) 135, 965, 1028, 1340, 1476, 1926
ZraI GACGTC 1 cut(s) 398
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.