Rh6DG295700

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001424
Physical Location & Seq
Reverse (-)
49673825 .. 49679511
5687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG295700.1

Sequence Viewer

Length: 1830 bp
ATGATGAGGAGGAGAAGTGAAAAGGGGAGCAGGAGTAGAAGCTCGGGGAGCTTCGGAAAGATTATGAACTGTCTCTGCTCGGGAGAGCAGATAAGAGCACCAGATGATTTGATTTTTTCAGATAGTGAATCCCTTGCAACCAGGGATCATAAGAGTGAGTTTTCATCACGTGTCGATGCAGTTAACCACAAATCACACACCAATATTTTAGAAGCTGAATCATCTCTGCGGGAGAGTGGTGGTTTGAACTACGAGGAAGCTAGAGCATTATTAGGAAGATGTGAATATCGTAAAGGAAACATAGAAGTTGCTTTACATGTATTTGAAGGAATAGATATTGCTGCAGTGACTCCAAAGATCAAAGTCACCCTTGCTAGAGCAGGTGAACATCGTAGGAGACGTTCTCAAAGTTATGAAACCCCACCTCTGTCTATAAATGCTGTCAGTTTACTTCTGGAAGCGATATTTCTTAAAGCAAAATCATTGCAGAGTCTTGGGAGGCTTAAAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACACTGTTGAATCTTCATTACCAGGCGGTTTACCTCAAAACTTAGGCGCTGACTGTAAATTCACTAAATTGCATGATATTGTAAGCCAGAGTGTTGAGTTGCTCCCAGAACTGTGGAAGTTTGCTGATTGTCCACATGAAGCTATCCTCTCATACCGATGGGCTCTACTCAGTCATTGGAACCTTGATACACAAACTACTGCAAAGATTCAGAAAGAGTTTGCCGTTTTTCTGTTGTATTGTGGAGATGAAGCAAGCCCCCCAGACCTCCGCTTCCAAATGGATAGATCATTTACACCGAAAAGCAATTTAGAAGAGGCTATTCTTCTGCTAATGATACTGCTTAGAAAAGTTTCTCTCAAAAGAATTGAATGGGATCCATCAATTTTGGATCATCTTTCATTTGCTCTATCTGTTTCTGGGAATTCCAGGGCTTTAGCTACTCAATTTGAAGAATTGCTACCTGGTTTTATTGATCGGAGAGAGAGATTTTACAAACTAGCTCTCTGTTACTATGGAGCAGGTGAAGATTCAGTTGCTTTAAATCTTCTGAGGAAGTTGTTGGGTAACTATATGGATCCAATGTGTTTTCCAGCTCTGTTGATGGCATCAAAGATATGTGGGGAAAACCGCAGTCATGCAGAAGAAGGGGTAGGTTTTGCACTCAGAGCCCTTGAAAGTGTTGATGGCAAATGTGATGAATCAAAAAGTACTGCCACTTGTTTATTGGGCATATCACTTTCAGCACACTCTAAATCAGTGGTTACTGATAGTGAGAGGGTGACAAGACAGGCCAAGGCACTTGAGGCCCTGAAAACTGCTGGGCAATTGACAGCAATGAGTGACCCCATTATTCTTTACCATCTCAGCCTAGAATATGCTGAGCAGAGATACTTAGATGCTGCGCTTGACTGTGCAAAGCAAATGCTAAATCTGGAAGGTGGATCTAATATTAAAGGTTGGTTATTGCTGAGCAGGATATTATCAGCTCAGAGACGGTTTGTGGATGCTGAAACAATCATAGATGGTGCTTTGGATCAGACAGGTAAATGGGATCAAGGAGAACTACTGCGCACCAAAGCCAAACTCCAACTTGCAGAGGGTCAGTTTAAACGTGCCATTGAGACGTACACTCAACTTCTTGCTCTTCTTCAAGTTCAGAAGAAAAACCTTGGTGACAGGAAGAAGCTTCTTAAGGTCTGTCATTCTTTATTTGATTACTTTATCCATTTATCCAAGGATTCTATTTCAGAAACAGTTATATATATATCTATATATATATTGATATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008104 GO:0008150 GO:0033036 GO:0034613 GO:0051179 GO:0051641 GO:0070727 GO:0072657 GO:0072659 GO:1990778
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

609

Amino Acids

68.1

Weight (kDa)

7.85

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 371, 1049
Acc16I TGCGCA 1 cut(s) 1610
Acc36I ACCTGC 2 cut(s) 371, 1049
AciI CCGC 4 cut(s) 229, 564, 808, 1168
AclWI GGATC 9 cut(s) 153, 908, 921, 936, 1109, 1122, 1489, 1581, 1599
AcsI RAATTY 2 cut(s) 596, 961
AcvI CACGTG 1 cut(s) 170
AfaI GTAC 2 cut(s) 1249, 1667
AflII CTTAAG 1 cut(s) 1730
AflIII ACRYGT 2 cut(s) 169, 316
AgsI TTSAA 7 cut(s) 247, 326, 548, 908, 989, 1214, 1691
AjnI CCWGG 4 cut(s) 140, 559, 965, 1000
Alw21I GWGCWC 1 cut(s) 100
Alw26I GTCTC 4 cut(s) 77, 391, 1525, 1655
AlwI GGATC 9 cut(s) 153, 908, 921, 936, 1109, 1122, 1489, 1581, 1599
Ama87I CYCGRG 2 cut(s) 43, 79
AoxI GGCC 2 cut(s) 1329, 1344
ApeKI GCWGC 3 cut(s) 341, 512, 1439
ApoI RAATTY 2 cut(s) 596, 961
Asp700I GAANNNNTTC 1 cut(s) 889
AspLEI GCGC 3 cut(s) 587, 1444, 1611
AspS9I GGNCC 1 cut(s) 1345
AsuHPI GGTGA 5 cut(s) 358, 395, 1073, 1330, 1724
AvaI CYCGRG 2 cut(s) 43, 79
BamHI GGATCC 2 cut(s) 913, 1114
BanII GRGCYC 2 cut(s) 703, 1210
BarI GAAGNNNNNNTAC 4 cut(s) 297, 329, 981, 1013
BbrPI CACGTG 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 100
BbvI GCAGC 3 cut(s) 328, 499, 1426
BccI CCATC 6 cut(s) 690, 925, 1135, 1217, 1407, 1556
BceAI ACGGC 1 cut(s) 746
BciT130I CCWGG 4 cut(s) 142, 561, 967, 1002
BcoDI GTCTC 4 cut(s) 77, 391, 1525, 1655
BfaI CTAG 4 cut(s) 261, 375, 1037, 1409
BfmI CTRYAG 1 cut(s) 342
BfoI RGCGCY 1 cut(s) 588
BfrI CTTAAG 1 cut(s) 1730
BfuAI ACCTGC 2 cut(s) 371, 1049
BisI GCNGC 3 cut(s) 342, 513, 1440
BlpI GCTNAGC 2 cut(s) 1419, 1508
BlsI GCNGC 3 cut(s) 343, 514, 1441
BmcAI AGTACT 1 cut(s) 1249
Bme1390I CCNGG 4 cut(s) 142, 561, 967, 1002
BmeT110I CYCGRG 2 cut(s) 43, 79
BmgT120I GGNCC 1 cut(s) 1345
BmiI GGNNCC 3 cut(s) 719, 915, 1116
BmrFI CCNGG 4 cut(s) 142, 561, 967, 1002
BmsI GCATC 4 cut(s) 166, 1154, 1426, 1534
BplI GAGNNNNNCTC 2 cut(s) 388, 420
Bpu1102I GCTNAGC 2 cut(s) 1419, 1508
BpuEI CTTGAG 1 cut(s) 1361
BsaAI YACGTR 1 cut(s) 170
BsaJI CCNNGG 5 cut(s) 141, 966, 1332, 1708, 1773
BsaXI ACNNNNNCTCC 3 cut(s) 19, 31, 49
Bse3DI GCAATG 2 cut(s) 482, 1380
BseBI CCWGG 4 cut(s) 142, 561, 967, 1002
BseDI CCNNGG 5 cut(s) 141, 966, 1332, 1708, 1773
BseGI GGATG 1 cut(s) 1549
BseMI GCAATG 2 cut(s) 482, 1380
BseMII CTCAG 7 cut(s) 721, 1079, 1216, 1410, 1417, 1499, 1541
BseRI GAGGAG 2 cut(s) 22, 25
BseXI GCAGC 3 cut(s) 328, 499, 1426
BseYI CCCAGC 1 cut(s) 1358
BshFI GGCC 2 cut(s) 1331, 1346
BsiHKAI GWGCWC 1 cut(s) 100
BsiHKCI CYCGRG 2 cut(s) 43, 79
BsmAI GTCTC 4 cut(s) 77, 391, 1525, 1655
BsmBI CGTCTC 3 cut(s) 391, 1525, 1655
BsnI GGCC 2 cut(s) 1331, 1346
BsoBI CYCGRG 2 cut(s) 43, 79
Bsp1286I GDGCHC 3 cut(s) 100, 703, 1210
Bsp1720I GCTNAGC 2 cut(s) 1419, 1508
BspACI CCGC 4 cut(s) 229, 564, 808, 1168
BspANI GGCC 2 cut(s) 1331, 1346
BspCNI CTCAG 7 cut(s) 720, 1080, 1215, 1411, 1416, 1500, 1540
BspLI GGNNCC 3 cut(s) 719, 915, 1116
BspMAI CTGCAG 1 cut(s) 346
BspMI ACCTGC 2 cut(s) 371, 1049
BspPI GGATC 9 cut(s) 153, 908, 921, 936, 1109, 1122, 1489, 1581, 1599
BspQI GCTCTTC 1 cut(s) 1689
BspTI CTTAAG 1 cut(s) 1730
BsrDI GCAATG 2 cut(s) 482, 1380
BssECI CCNNGG 5 cut(s) 141, 966, 1332, 1708, 1773
BssT1I CCWWGG 3 cut(s) 1332, 1708, 1773
Bst2UI CCWGG 4 cut(s) 142, 561, 967, 1002
Bst4CI ACNGT 7 cut(s) 71, 544, 593, 651, 1451, 1536, 1795
Bst6I CTCTTC 2 cut(s) 846, 1689
BstAFI CTTAAG 1 cut(s) 1730
BstBAI YACGTR 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 793
BstF5I GGATG 1 cut(s) 1549
BstH2I RGCGCY 1 cut(s) 588
BstHHI GCGC 3 cut(s) 587, 1444, 1611
BstMAI GTCTC 4 cut(s) 77, 391, 1525, 1655
BstMWI GCNNNNNNNGC 3 cut(s) 48, 1205, 1343
BstNI CCWGG 4 cut(s) 142, 561, 967, 1002
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 4 cut(s) 140, 559, 965, 1000
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 3 cut(s) 328, 499, 1426
BstX2I RGATCY 3 cut(s) 913, 1114, 1481
BstXI CCANNNNNNTGG 1 cut(s) 651
BstYI RGATCY 3 cut(s) 913, 1114, 1481
BsuRI GGCC 2 cut(s) 1331, 1346
BtsCI GGATG 1 cut(s) 1549
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 3 cut(s) 351, 540, 1302
BveI ACCTGC 2 cut(s) 371, 1049
Cac8I GCNNGC 1 cut(s) 793
CfoI GCGC 3 cut(s) 587, 1444, 1611
Cfr13I GGNCC 1 cut(s) 1345
CsiI ACCWGGT 1 cut(s) 1000
Csp6I GTAC 2 cut(s) 1248, 1666
CviAII CATG 4 cut(s) 317, 611, 674, 1175
CviQI GTAC 2 cut(s) 1248, 1666
DraI TTTAAA 2 cut(s) 1080, 1648
Eam1104I CTCTTC 2 cut(s) 846, 1689
EarI CTCTTC 2 cut(s) 846, 1689
Eco130I CCWWGG 3 cut(s) 1332, 1708, 1773
Eco24I GRGCYC 2 cut(s) 703, 1210
Eco72I CACGTG 1 cut(s) 170
Eco88I CYCGRG 2 cut(s) 43, 79
EcoO109I RGGNCCY 1 cut(s) 1345
EcoRI GAATTC 1 cut(s) 961
EcoRII CCWGG 4 cut(s) 140, 559, 965, 1000
EcoT14I CCWWGG 3 cut(s) 1332, 1708, 1773
EcoT38I GRGCYC 2 cut(s) 703, 1210
ErhI CCWWGG 3 cut(s) 1332, 1708, 1773
Esp3I CGTCTC 3 cut(s) 391, 1525, 1655
FaeI CATG 4 cut(s) 320, 614, 677, 1178
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FatI CATG 4 cut(s) 316, 610, 673, 1174
FauI CCCGC 1 cut(s) 222
Fnu4HI GCNGC 3 cut(s) 342, 513, 1440
FokI GGATG 1 cut(s) 1556
FriOI GRGCYC 2 cut(s) 703, 1210
Fsp4HI GCNGC 3 cut(s) 342, 513, 1440
FspBI CTAG 4 cut(s) 261, 375, 1037, 1409
FspI TGCGCA 1 cut(s) 1610
GlaI GCGC 3 cut(s) 586, 1443, 1610
GluI GCNGC 3 cut(s) 342, 513, 1440
GsaI CCCAGC 1 cut(s) 1362
HaeII RGCGCY 1 cut(s) 588
HaeIII GGCC 2 cut(s) 1331, 1346
HhaI GCGC 3 cut(s) 587, 1444, 1611
Hin1II CATG 4 cut(s) 320, 614, 677, 1178
Hin6I GCGC 3 cut(s) 585, 1442, 1609
HinP1I GCGC 3 cut(s) 585, 1442, 1609
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 1724
HinfI GANTC 9 cut(s) 128, 218, 349, 490, 548, 745, 1067, 1238, 1778
HpaI GTTAAC 1 cut(s) 184
HphI GGTGA 5 cut(s) 358, 395, 1073, 1330, 1724
Hpy166II GTNNAC 6 cut(s) 184, 386, 449, 569, 671, 1668
Hpy188III TCNNGA 4 cut(s) 81, 455, 536, 1472
Hpy8I GTNNAC 6 cut(s) 184, 386, 449, 569, 671, 1668
HpyAV CCTTC 3 cut(s) 320, 1178, 1469
HpyCH4III ACNGT 7 cut(s) 71, 544, 593, 651, 1451, 1536, 1795
HpyCH4IV ACGT 4 cut(s) 169, 400, 1651, 1664
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 1205, 1343
HpySE526I ACGT 4 cut(s) 169, 400, 1651, 1664
Hsp92II CATG 4 cut(s) 320, 614, 677, 1178
HspAI GCGC 3 cut(s) 585, 1442, 1609
KspAI GTTAAC 1 cut(s) 184
LguI GCTCTTC 1 cut(s) 1689
LmnI GCTCC 4 cut(s) 27, 48, 645, 1055
Lsp1109I GCAGC 3 cut(s) 328, 499, 1426
LweI GCATC 4 cut(s) 166, 1154, 1426, 1534
MabI ACCWGGT 1 cut(s) 1000
MaeI CTAG 4 cut(s) 261, 375, 1037, 1409
MaeII ACGT 4 cut(s) 169, 400, 1651, 1664
MaeIII GTNAC 8 cut(s) 346, 364, 1046, 1103, 1300, 1318, 1379, 1712
MfeI CAATTG 1 cut(s) 1364
MflI RGATCY 3 cut(s) 913, 1114, 1481
MhlI GDGCHC 3 cut(s) 100, 703, 1210
MluCI AATT 9 cut(s) 596, 605, 844, 903, 921, 961, 983, 992, 1364
MlyI GAGTC 2 cut(s) 343, 499
MmeI TCCRAC 1 cut(s) 1651
MroXI GAANNNNTTC 1 cut(s) 889
MseI TTAA 8 cut(s) 183, 471, 504, 1079, 1491, 1647, 1731, 1828
MslI CAYNNNNRTG 2 cut(s) 153, 694
MspCI CTTAAG 1 cut(s) 1730
MspR9I CCNGG 4 cut(s) 142, 561, 967, 1002
MssI GTTTAAAC 1 cut(s) 1648
MunI CAATTG 1 cut(s) 1364
MvaI CCWGG 4 cut(s) 142, 561, 967, 1002
MwoI GCNNNNNNNGC 3 cut(s) 48, 1205, 1343
NlaIII CATG 4 cut(s) 320, 614, 677, 1178
NlaIV GGNNCC 3 cut(s) 719, 915, 1116
NmuCI GTSAC 5 cut(s) 346, 364, 1318, 1379, 1712
NsbI TGCGCA 1 cut(s) 1610
NspI RCATGY 1 cut(s) 320
PaqCI CACCTGC 2 cut(s) 371, 1049
PciI ACATGT 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 1689
PcsI WCGNNNNNNNCGW 1 cut(s) 397
PdmI GAANNNNTTC 1 cut(s) 889
PfeI GAWTC 7 cut(s) 128, 218, 548, 745, 1067, 1238, 1778
PkrI GCNGC 3 cut(s) 343, 514, 1441
PleI GAGTC 2 cut(s) 343, 498
PmaCI CACGTG 1 cut(s) 170
PmeI GTTTAAAC 1 cut(s) 1648
PmlI CACGTG 1 cut(s) 170
PpsI GAGTC 2 cut(s) 343, 498
Ppu21I YACGTR 1 cut(s) 170
PscI ACATGT 1 cut(s) 316
Psp6I CCWGG 4 cut(s) 140, 559, 965, 1000
PspCI CACGTG 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 1358
PspGI CCWGG 4 cut(s) 140, 559, 965, 1000
PspN4I GGNNCC 3 cut(s) 719, 915, 1116
PspPI GGNCC 1 cut(s) 1345
PsrI GAACNNNNNNTAC 2 cut(s) 385, 417
PstI CTGCAG 1 cut(s) 346
PsuI RGATCY 3 cut(s) 913, 1114, 1481
RsaI GTAC 2 cut(s) 1249, 1667
RsaNI GTAC 2 cut(s) 1248, 1666
RseI CAYNNNNRTG 2 cut(s) 153, 694
SapI GCTCTTC 1 cut(s) 1689
SaqAI TTAA 8 cut(s) 183, 471, 504, 1079, 1491, 1647, 1731, 1828
SatI GCNGC 3 cut(s) 342, 513, 1440
Sau96I GGNCC 1 cut(s) 1345
ScaI AGTACT 1 cut(s) 1249
SchI GAGTC 2 cut(s) 343, 499
ScrFI CCNGG 4 cut(s) 142, 561, 967, 1002
SduI GDGCHC 3 cut(s) 100, 703, 1210
SexAI ACCWGGT 1 cut(s) 1000
SfaNI GCATC 4 cut(s) 166, 1154, 1426, 1534
SfcI CTRYAG 1 cut(s) 342
SmiMI CAYNNNNRTG 2 cut(s) 153, 694
SmlI CTYRAG 2 cut(s) 1340, 1730
SmoI CTYRAG 2 cut(s) 1340, 1730
Sse9I AATT 9 cut(s) 596, 605, 844, 903, 921, 961, 983, 992, 1364
SsiI CCGC 4 cut(s) 229, 564, 808, 1168
SspI AATATT 2 cut(s) 205, 1489
SspMI CTAG 4 cut(s) 261, 375, 1037, 1409
StyD4I CCNGG 4 cut(s) 140, 559, 965, 1000
StyI CCWWGG 3 cut(s) 1332, 1708, 1773
TaaI ACNGT 7 cut(s) 71, 544, 593, 651, 1451, 1536, 1795
TaiI ACGT 4 cut(s) 172, 403, 1654, 1667
TaqI TCGA 1 cut(s) 174
TasI AATT 9 cut(s) 596, 605, 844, 903, 921, 961, 983, 992, 1364
TatI WGTACW 1 cut(s) 1247
TfiI GAWTC 7 cut(s) 128, 218, 548, 745, 1067, 1238, 1778
Tru1I TTAA 8 cut(s) 183, 471, 504, 1079, 1491, 1647, 1731, 1828
Tru9I TTAA 8 cut(s) 183, 471, 504, 1079, 1491, 1647, 1731, 1828
TscAI CASTG 3 cut(s) 351, 547, 1302
TseFI GTSAC 5 cut(s) 346, 364, 1318, 1379, 1712
TseI GCWGC 3 cut(s) 341, 512, 1439
Tsp45I GTSAC 5 cut(s) 346, 364, 1318, 1379, 1712
TspDTI ATGAA 8 cut(s) 80, 153, 429, 543, 690, 801, 927, 1251
TspRI CASTG 3 cut(s) 351, 547, 1302
Vha464I CTTAAG 1 cut(s) 1730
XapI RAATTY 2 cut(s) 596, 961
XceI RCATGY 1 cut(s) 320
XcmI CCANNNNNNNNNTGG 1 cut(s) 1261
XmnI GAANNNNTTC 1 cut(s) 889
XspI CTAG 4 cut(s) 261, 375, 1037, 1409
ZrmI AGTACT 1 cut(s) 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.