MD05G1192900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0010790
Physical Location & Seq
Forward (+)
32079662 .. 32080135
474 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1192900.v1.1.491

Sequence Viewer

Length: 474 bp
ATGAACTGCTGCTGCACACGTGGCATGCACACAGAGAGCGATCATATGAACACCAAAACGATGCGTTTGCCACCTCGTCGGATTTCGACGACCAATGCGTCAAATAATACCAACAGCAACAACAAGCGCAAGGAGAAGGAGGGTGACTTCGACGCGCTCCAGCGGACCAAGACGCTCAAGCTGTCCCCACCACCCCAAGCCAAGCCGTCCGAGCCAGCCCAGCCGCCCGGTCAGCTCCTGGCTGGCTATCTGGCGCACGAGTTCCTCACCAGGGGCAGCCTCCTCGGGCAGCCGTGGGACCCGTCCCGAGCCGAGCCGGCTCCTTCGGGAGTCAGCAGCAGCAAGATCGAAGCCGAGCCGAAGTTCGAGAGCTTGGAGAGATACGTGGAAGTCGCTGATTTGCTGAAAACGGAGGGGGCCCACTTGGCTGGCGTTGTGAATCCAACTCAGCTCGCTGGGTTTTTACAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.18

Weight (kDa)

8.48

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04000 AT5G44060
fragaria_vesca FvH4_2g20950
malus_domestica MD05G1192900.v1.1 MD10G1179300.v1.1
prunus_persica Prupe.8G219100_v2.0.a1
pyrus_communis pycom05g17980 pycom10g15550
rosa_chinensis RchiOBHm_Chr6g0287331
rosa_laevigata RLG00000012498
rosa_multiflora Rmu_co8349819.1_g000001 Rmu_sc0004701.1_g000001
rosa_roxburghii Rroxscaffold_7G00181530
rosa_rugosa Rorug06G0187100
rosa_samantha Rh6AG298500 Rh6BG304100 Rh6CG305600 Rh6CG312600 Rh6DG295900
rosa_wichuraiana Rw6G025800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 97
AccII CGCG 1 cut(s) 155
AciI CCGC 2 cut(s) 163, 224
AcvI CACGTG 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 271
AflIII ACRYGT 1 cut(s) 17
AjnI CCWGG 2 cut(s) 237, 269
AluBI AGCT 4 cut(s) 181, 235, 372, 451
AluI AGCT 4 cut(s) 181, 235, 372, 451
AlwNI CAGNNNCTG 1 cut(s) 238
Ama87I CYCGRG 2 cut(s) 284, 306
AoxI GGCC 1 cut(s) 417
ApaI GGGCCC 1 cut(s) 421
ApeKI GCWGC 6 cut(s) 9, 12, 276, 289, 336, 339
AspLEI GCGC 3 cut(s) 129, 157, 256
AspS9I GGNCC 4 cut(s) 165, 298, 417, 418
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 155, 259
AvaI CYCGRG 2 cut(s) 284, 306
AvaII GGWCC 2 cut(s) 165, 298
BaeGI GKGCMC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 421
BauI CACGAG 1 cut(s) 257
BbrPI CACGTG 1 cut(s) 20
BbvI GCAGC 4 cut(s) 288, 301, 348, 351
BceAI ACGGC 2 cut(s) 190, 277
BcgI CGANNNNNNTGC 6 cut(s) 49, 83, 265, 299, 328, 362
BciT130I CCWGG 2 cut(s) 239, 271
BcnI CCSGG 1 cut(s) 228
BglI GCCNNNNNGGC 2 cut(s) 317, 425
BisI GCNGC 7 cut(s) 10, 13, 224, 277, 290, 337, 340
BlsI GCNGC 7 cut(s) 11, 14, 225, 278, 291, 338, 341
Bme1390I CCNGG 3 cut(s) 228, 239, 271
Bme18I GGWCC 2 cut(s) 165, 298
BmeT110I CYCGRG 2 cut(s) 284, 306
BmgT120I GGNCC 4 cut(s) 165, 298, 417, 418
BmiI GGNNCC 5 cut(s) 299, 300, 321, 418, 419
BmrFI CCNGG 3 cut(s) 228, 239, 271
BmsI GCATC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 228
BsaAI YACGTR 2 cut(s) 20, 385
BsaJI CCNNGG 3 cut(s) 270, 283, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse118I RCCGGY 1 cut(s) 316
BseBI CCWGG 2 cut(s) 239, 271
BseDI CCNNGG 3 cut(s) 270, 283, 293
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 461
BseRI GAGGAG 1 cut(s) 272
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 4 cut(s) 288, 301, 348, 351
BseYI CCCAGC 2 cut(s) 219, 455
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 419
BsiHKCI CYCGRG 2 cut(s) 284, 306
BsiSI CCGG 2 cut(s) 228, 317
BslFI GGGAC 3 cut(s) 169, 289, 311
BslI CCNNNNNNNGG 1 cut(s) 271
BsmFI GGGAC 3 cut(s) 169, 289, 311
BsnI GGCC 1 cut(s) 419
BsoBI CYCGRG 2 cut(s) 284, 306
Bsp120I GGGCCC 1 cut(s) 417
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 2 cut(s) 40, 345
BspACI CCGC 2 cut(s) 163, 224
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 1 cut(s) 460
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 5 cut(s) 299, 300, 321, 418, 419
BsrFI RCCGGY 1 cut(s) 316
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 3 cut(s) 270, 283, 293
BssMI GATC 2 cut(s) 40, 345
BssSI CACGAG 1 cut(s) 257
Bst2BI CACGAG 1 cut(s) 257
Bst2UI CCWGG 2 cut(s) 239, 271
Bst4CI ACNGT 1 cut(s) 468
BstBAI YACGTR 2 cut(s) 20, 385
BstC8I GCNNGC 6 cut(s) 26, 216, 244, 318, 430, 453
BstDEI CTNAG 1 cut(s) 447
BstDSI CCRYGG 1 cut(s) 293
BstFNI CGCG 1 cut(s) 155
BstHHI GCGC 3 cut(s) 129, 157, 256
BstKTI GATC 2 cut(s) 43, 348
BstMBI GATC 2 cut(s) 40, 345
BstMWI GCNNNNNNNGC 6 cut(s) 21, 211, 220, 232, 317, 425
BstNI CCWGG 2 cut(s) 239, 271
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 3 cut(s) 226, 237, 269
BstSLI GKGCMC 1 cut(s) 421
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 4 cut(s) 288, 301, 348, 351
BstXI CCANNNNNNTGG 1 cut(s) 428
BsuRI GGCC 1 cut(s) 419
BtgI CCRYGG 1 cut(s) 293
Cac8I GCNNGC 6 cut(s) 26, 216, 244, 318, 430, 453
CaiI CAGNNNCTG 1 cut(s) 238
CfoI GCGC 3 cut(s) 129, 157, 256
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 4 cut(s) 165, 298, 417, 418
CseI GACGC 3 cut(s) 87, 161, 181
CviAII CATG 1 cut(s) 25
DdeI CTNAG 1 cut(s) 447
DpnI GATC 2 cut(s) 42, 347
DpnII GATC 2 cut(s) 40, 345
DrdI GACNNNNNNGTC 1 cut(s) 97
DseDI GACNNNNNNGTC 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 165, 298
Eco72I CACGTG 1 cut(s) 20
Eco88I CYCGRG 2 cut(s) 284, 306
EcoO109I RGGNCCY 2 cut(s) 298, 417
EcoRII CCWGG 2 cut(s) 237, 269
EcoT38I GRGCYC 1 cut(s) 421
FaeI CATG 1 cut(s) 28
FaiI YATR 3 cut(s) 26, 45, 47
FaqI GGGAC 3 cut(s) 169, 289, 311
FatI CATG 1 cut(s) 24
FauNDI CATATG 1 cut(s) 45
Fnu4HI GCNGC 7 cut(s) 10, 13, 224, 277, 290, 337, 340
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 7 cut(s) 10, 13, 224, 277, 290, 337, 340
GlaI GCGC 3 cut(s) 128, 156, 255
GluI GCNGC 7 cut(s) 10, 13, 224, 277, 290, 337, 340
GsaI CCCAGC 2 cut(s) 223, 459
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 1 cut(s) 419
HapII CCGG 2 cut(s) 228, 317
HgaI GACGC 3 cut(s) 87, 161, 181
HhaI GCGC 3 cut(s) 129, 157, 256
Hin1II CATG 1 cut(s) 28
Hin6I GCGC 3 cut(s) 127, 155, 254
HinP1I GCGC 3 cut(s) 127, 155, 254
HinfI GANTC 2 cut(s) 330, 439
HpaII CCGG 2 cut(s) 228, 317
HphI GGTGA 2 cut(s) 155, 259
Hpy188I TCNGA 2 cut(s) 81, 211
Hpy188III TCNNGA 3 cut(s) 306, 327, 367
Hpy99I CGWCG 3 cut(s) 81, 91, 155
HpyAV CCTTC 2 cut(s) 130, 333
HpyCH4III ACNGT 1 cut(s) 468
HpyCH4IV ACGT 2 cut(s) 19, 384
HpyCH4V TGCA 2 cut(s) 15, 28
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 211, 220, 232, 317, 425
HpyF3I CTNAG 1 cut(s) 447
HpySE526I ACGT 2 cut(s) 19, 384
Hsp92II CATG 1 cut(s) 28
HspAI GCGC 3 cut(s) 127, 155, 254
KflI GGGWCCC 1 cut(s) 298
KroI GCCGGC 1 cut(s) 316
KroNI GCCGGC 1 cut(s) 318
Kzo9I GATC 2 cut(s) 40, 345
LmnI GCTCC 3 cut(s) 162, 240, 325
Lsp1109I GCAGC 4 cut(s) 288, 301, 348, 351
LweI GCATC 1 cut(s) 51
MaeII ACGT 2 cut(s) 19, 384
MaeIII GTNAC 1 cut(s) 143
MalI GATC 2 cut(s) 42, 347
MboI GATC 2 cut(s) 40, 345
MhlI GDGCHC 1 cut(s) 421
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 2 cut(s) 59, 467
MnlI CCTC 6 cut(s) 84, 133, 275, 290, 293, 406
MroNI GCCGGC 1 cut(s) 316
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 2 cut(s) 228, 317
MspR9I CCNGG 3 cut(s) 228, 239, 271
MvaI CCWGG 2 cut(s) 239, 271
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 6 cut(s) 21, 211, 220, 232, 317, 425
NaeI GCCGGC 1 cut(s) 318
NciI CCSGG 1 cut(s) 228
NdeI CATATG 1 cut(s) 45
NdeII GATC 2 cut(s) 40, 345
NgoMIV GCCGGC 1 cut(s) 316
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 5 cut(s) 299, 300, 321, 418, 419
NmeAIII GCCGAG 2 cut(s) 337, 379
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 1 cut(s) 28
PaeI GCATGC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PdiI GCCGGC 1 cut(s) 318
PfeI GAWTC 1 cut(s) 439
PkrI GCNGC 7 cut(s) 11, 14, 225, 278, 291, 338, 341
PleI GAGTC 1 cut(s) 338
PmaCI CACGTG 1 cut(s) 20
PmlI CACGTG 1 cut(s) 20
PpsI GAGTC 1 cut(s) 338
Ppu21I YACGTR 2 cut(s) 20, 385
PpuMI RGGWCCY 1 cut(s) 298
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 2 cut(s) 237, 269
PspCI CACGTG 1 cut(s) 20
PspFI CCCAGC 2 cut(s) 219, 455
PspGI CCWGG 2 cut(s) 237, 269
PspN4I GGNNCC 5 cut(s) 299, 300, 321, 418, 419
PspOMI GGGCCC 1 cut(s) 417
PspPI GGNCC 4 cut(s) 165, 298, 417, 418
PspPPI RGGWCCY 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 238
SatI GCNGC 7 cut(s) 10, 13, 224, 277, 290, 337, 340
Sau3AI GATC 2 cut(s) 40, 345
Sau96I GGNCC 4 cut(s) 165, 298, 417, 418
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 3 cut(s) 228, 239, 271
SduI GDGCHC 1 cut(s) 421
SetI ASST 7 cut(s) 22, 76, 183, 237, 374, 387, 453
SfaNI GCATC 1 cut(s) 51
SinI GGWCC 2 cut(s) 165, 298
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SphI GCATGC 1 cut(s) 28
SsiI CCGC 2 cut(s) 163, 224
StyD4I CCNGG 3 cut(s) 226, 237, 269
TaaI ACNGT 1 cut(s) 468
TaiI ACGT 2 cut(s) 22, 387
TaqI TCGA 4 cut(s) 86, 150, 348, 366
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 1 cut(s) 439
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 6 cut(s) 9, 12, 276, 289, 336, 339
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 17, 62
TspGWI ACGGA 1 cut(s) 425
VpaK11BI GGWCC 2 cut(s) 165, 298
XceI RCATGY 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.