FvH4_2g20950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010790
Physical Location & Seq
Forward (+)
17488528 .. 17488968
441 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20950.t1

Sequence Viewer

Length: 441 bp
ATGAACACCAAAACGATGCGTTTGCCTCCACGTCGGATTTCGACGACTATTGCGTCATCAAATAACAACGCCCCCAAGCGCAAGGAGCGGGAGAGTTTACTCGACGCGCCCCACAACCCAGCCAAGACGCTCAAGCTTTCCCATCAAGCCGAGCCGCCGGGTTCTTCGGCTCTGGCCTCCGGTCACCTCCTGGCTGGCTATTTGGCCCACGAGTTTCTCACCAAGGGCACCCTCCTCGGCCAGCTCTGGGACCCTACAGCCCGATCCGCCGCTGAGGAACCACCGGTTGAGAAATCCCCAGATCGGCGCGAAGCCGAAGCCGAGCCGCAGTACGAGAAGCTGGAGAGGTACGTGGAGGTTGCTGATTTGCTGAAGACGGATGGGGCTCAGTTGGCTGGCATTGTCAACCCTACTCAGCTTGCACGCTTTTTACAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.04

Weight (kDa)

8.02

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04000 AT5G44060
fragaria_vesca FvH4_2g20950
malus_domestica MD05G1192900.v1.1 MD10G1179300.v1.1
prunus_persica Prupe.8G219100_v2.0.a1
pyrus_communis pycom05g17980 pycom10g15550
rosa_chinensis RchiOBHm_Chr6g0287331
rosa_laevigata RLG00000012498
rosa_multiflora Rmu_co8349819.1_g000001 Rmu_sc0004701.1_g000001
rosa_roxburghii Rroxscaffold_7G00181530
rosa_rugosa Rorug06G0187100
rosa_samantha Rh6AG298500 Rh6BG304100 Rh6CG305600 Rh6CG312600 Rh6DG295900
rosa_wichuraiana Rw6G025800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AccB1I GGYRCC 1 cut(s) 227
AccBSI CCGCTC 1 cut(s) 88
AccII CGCG 2 cut(s) 107, 309
AciI CCGC 5 cut(s) 88, 155, 267, 270, 326
AclWI GGATC 1 cut(s) 258
AcoI YGGCCR 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 392
AfaI GTAC 2 cut(s) 332, 350
AfiI CCNNNNNNNGG 2 cut(s) 247, 303
AgeI ACCGGT 1 cut(s) 283
AjiI CACGTC 1 cut(s) 32
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 4 cut(s) 136, 244, 340, 418
AluI AGCT 4 cut(s) 136, 244, 340, 418
AlwI GGATC 1 cut(s) 258
AoxI GGCC 3 cut(s) 174, 204, 238
AsiGI ACCGGT 1 cut(s) 283
AspLEI GCGC 3 cut(s) 81, 109, 309
AspS9I GGNCC 2 cut(s) 205, 250
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 2 cut(s) 176, 211
AvaII GGWCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 230
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 388
BauI CACGAG 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 380
BbvCI CCTCAGC 1 cut(s) 273
BccI CCATC 2 cut(s) 150, 374
BcgI CGANNNNNNTGC 4 cut(s) 4, 38, 217, 251
BciT130I CCWGG 1 cut(s) 191
BcnI CCSGG 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 255
BisI GCNGC 3 cut(s) 155, 270, 326
BlsI GCNGC 3 cut(s) 156, 271, 327
Bme1390I CCNGG 2 cut(s) 159, 191
Bme18I GGWCC 1 cut(s) 250
BmgBI CACGTC 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 205, 250
BmiI GGNNCC 4 cut(s) 229, 251, 252, 279
BmrFI CCNGG 2 cut(s) 159, 191
BmsI GCATC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 380
BpmI CTGGAG 1 cut(s) 362
Bpu10I CCTNAGC 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 352
BsaJI CCNNGG 2 cut(s) 222, 235
BsaWI WCCGGW 2 cut(s) 179, 283
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 303
Bse118I RCCGGY 1 cut(s) 283
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 2 cut(s) 222, 235
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 2 cut(s) 247, 303
BseMII CTCAG 3 cut(s) 264, 401, 428
BseRI GAGGAG 1 cut(s) 224
BseSI GKGCMC 1 cut(s) 230
BseYI CCCAGC 1 cut(s) 118
Bsh1236I CGCG 2 cut(s) 107, 309
BshFI GGCC 3 cut(s) 176, 206, 240
BshNI GGYRCC 1 cut(s) 227
BshTI ACCGGT 1 cut(s) 283
BsiSI CCGG 3 cut(s) 158, 180, 284
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 247, 303
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 3 cut(s) 176, 206, 240
Bsp1286I GDGCHC 2 cut(s) 230, 388
Bsp143I GATC 2 cut(s) 263, 301
BspACI CCGC 5 cut(s) 88, 155, 267, 270, 326
BspANI GGCC 3 cut(s) 176, 206, 240
BspCNI CTCAG 3 cut(s) 265, 400, 427
BspFNI CGCG 2 cut(s) 107, 309
BspLI GGNNCC 4 cut(s) 229, 251, 252, 279
BspPI GGATC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 227
BsrBI CCGCTC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 222, 235
BssMI GATC 2 cut(s) 263, 301
BssSI CACGAG 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 435
BstBAI YACGTR 1 cut(s) 352
BstC8I GCNNGC 5 cut(s) 196, 242, 397, 420, 424
BstDEI CTNAG 3 cut(s) 273, 387, 414
BstEII GGTNACC 1 cut(s) 182
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 2 cut(s) 107, 309
BstHHI GCGC 3 cut(s) 81, 109, 309
BstKTI GATC 2 cut(s) 266, 304
BstMBI GATC 2 cut(s) 263, 301
BstMWI GCNNNNNNNGC 3 cut(s) 85, 266, 392
BstNI CCWGG 1 cut(s) 191
BstPI GGTNACC 1 cut(s) 182
BstSCI CCNGG 2 cut(s) 157, 189
BstSFI CTRYAG 1 cut(s) 255
BstSLI GKGCMC 1 cut(s) 230
BstUI CGCG 2 cut(s) 107, 309
BstV2I GAAGAC 1 cut(s) 380
BsuRI GGCC 3 cut(s) 176, 206, 240
BtrI CACGTC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 385
Cac8I GCNNGC 5 cut(s) 196, 242, 397, 420, 424
CfoI GCGC 3 cut(s) 81, 109, 309
Cfr10I RCCGGY 1 cut(s) 283
Cfr13I GGNCC 2 cut(s) 205, 250
CseI GACGC 3 cut(s) 42, 113, 136
Csp6I GTAC 2 cut(s) 331, 349
CspAI ACCGGT 1 cut(s) 283
CviQI GTAC 2 cut(s) 331, 349
DdeI CTNAG 3 cut(s) 273, 387, 414
DpnI GATC 2 cut(s) 265, 303
DpnII GATC 2 cut(s) 263, 301
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 238
EciI GGCGGA 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 392
Eco91I GGTNACC 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 250
EcoO65I GGTNACC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 222
FaqI GGGAC 1 cut(s) 263
FauI CCCGC 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 155, 270, 326
FokI GGATG 1 cut(s) 392
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 3 cut(s) 155, 270, 326
GlaI GCGC 3 cut(s) 80, 108, 308
GluI GCNGC 3 cut(s) 155, 270, 326
GsaI CCCAGC 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 3 cut(s) 176, 206, 240
HapII CCGG 3 cut(s) 158, 180, 284
HgaI GACGC 3 cut(s) 42, 113, 136
HhaI GCGC 3 cut(s) 81, 109, 309
Hin6I GCGC 3 cut(s) 79, 107, 307
HinP1I GCGC 3 cut(s) 79, 107, 307
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 134
HpaII CCGG 3 cut(s) 158, 180, 284
HphI GGTGA 2 cut(s) 176, 211
Hpy166II GTNNAC 2 cut(s) 98, 406
Hpy188I TCNGA 1 cut(s) 36
Hpy8I GTNNAC 2 cut(s) 98, 406
Hpy99I CGWCG 3 cut(s) 36, 46, 107
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4IV ACGT 2 cut(s) 31, 351
HpyCH4V TGCA 1 cut(s) 422
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 266, 392
HpyF3I CTNAG 3 cut(s) 273, 387, 414
HpySE526I ACGT 2 cut(s) 31, 351
HspAI GCGC 3 cut(s) 79, 107, 307
KflI GGGWCCC 1 cut(s) 250
Kzo9I GATC 2 cut(s) 263, 301
LmnI GCTCC 1 cut(s) 85
LweI GCATC 1 cut(s) 6
MaeII ACGT 2 cut(s) 31, 351
MaeIII GTNAC 1 cut(s) 182
MalI GATC 2 cut(s) 265, 303
MbiI CCGCTC 1 cut(s) 88
MboI GATC 2 cut(s) 263, 301
MboII GAAGA 2 cut(s) 156, 385
MhlI GDGCHC 2 cut(s) 230, 388
MmeI TCCRAC 1 cut(s) 14
MnlI CCTC 8 cut(s) 36, 187, 197, 242, 245, 268, 339, 349
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 3 cut(s) 158, 180, 284
MspR9I CCNGG 2 cut(s) 159, 191
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 2 cut(s) 107, 309
MwoI GCNNNNNNNGC 3 cut(s) 85, 266, 392
NciI CCSGG 1 cut(s) 159
NdeII GATC 2 cut(s) 263, 301
NlaIV GGNNCC 4 cut(s) 229, 251, 252, 279
NmeAIII GCCGAG 3 cut(s) 175, 216, 346
NmuCI GTSAC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PinAI ACCGGT 1 cut(s) 283
PkrI GCNGC 3 cut(s) 156, 271, 327
Ppu21I YACGTR 1 cut(s) 352
PpuMI RGGWCCY 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 189
PspEI GGTNACC 1 cut(s) 182
PspFI CCCAGC 1 cut(s) 118
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 4 cut(s) 229, 251, 252, 279
PspPI GGNCC 2 cut(s) 205, 250
PspPPI RGGWCCY 1 cut(s) 250
RsaI GTAC 2 cut(s) 332, 350
RsaNI GTAC 2 cut(s) 331, 349
SatI GCNGC 3 cut(s) 155, 270, 326
Sau3AI GATC 2 cut(s) 263, 301
Sau96I GGNCC 2 cut(s) 205, 250
ScrFI CCNGG 2 cut(s) 159, 191
SduI GDGCHC 2 cut(s) 230, 388
SetI ASST 9 cut(s) 34, 138, 189, 246, 342, 350, 354, 360, 420
SfaNI GCATC 1 cut(s) 6
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SsiI CCGC 5 cut(s) 88, 155, 267, 270, 326
StyD4I CCNGG 2 cut(s) 157, 189
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 435
TaiI ACGT 2 cut(s) 34, 354
TaqI TCGA 2 cut(s) 41, 102
TauI GCSGC 3 cut(s) 157, 272, 328
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.