RLG00000012498

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010790
Physical Location & Seq
Reverse (-)
19298556 .. 19299402
847 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012498

Sequence Viewer

Length: 351 bp
ATGCGTTTGCCGCCACGTCGGATTTCGACGACCAATGCGTCATCAAATAGCAACACCCCCACCACCAAGCGCAAGGAGAACGAGAGTGCGCTCGACGCGCCCCACCCAGCCAAGGCGCTCAAGCTGTCCCCCACCGAGCCGGCTCATCAAGCCGCCGCATCCGAGCCGGCTCTGGCCTCCGGTCATCTCCTAGCTGGCTATTTGGCCCATGAATTCCTCACCAAGGGCACCCTCCTCGGGCAGCTGTGGGACCCGACCGCCCGATCTTCCGCCGAAGAGCAACCGGTCACGAGATCCCCAGATCGGCTCGAAGCCGAGCCGCAGTACGAGAAGCTGGAGAGTGCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.52

Weight (kDa)

6.41

Isoelectric Point (pI)

56.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04000 AT5G44060
fragaria_vesca FvH4_2g20950
malus_domestica MD05G1192900.v1.1 MD10G1179300.v1.1
prunus_persica Prupe.8G219100_v2.0.a1
pyrus_communis pycom05g17980 pycom10g15550
rosa_chinensis RchiOBHm_Chr6g0287331
rosa_laevigata RLG00000012498
rosa_multiflora Rmu_co8349819.1_g000001 Rmu_sc0004701.1_g000001
rosa_roxburghii Rroxscaffold_7G00181530
rosa_rugosa Rorug06G0187100
rosa_samantha Rh6AG298500 Rh6BG304100 Rh6CG305600 Rh6CG312600 Rh6DG295900
rosa_wichuraiana Rw6G025800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 227
AccII CGCG 1 cut(s) 98
AciI CCGC 6 cut(s) 11, 153, 156, 258, 270, 320
AclWI GGATC 1 cut(s) 288
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 4 cut(s) 112, 223, 237, 303
AgeI ACCGGT 1 cut(s) 283
AjiI CACGTC 1 cut(s) 17
AluBI AGCT 4 cut(s) 124, 194, 244, 334
AluI AGCT 4 cut(s) 124, 194, 244, 334
AlwI GGATC 1 cut(s) 288
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 2 cut(s) 174, 204
ApeKI GCWGC 1 cut(s) 241
ApoI RAATTY 1 cut(s) 212
AsiGI ACCGGT 1 cut(s) 283
AspLEI GCGC 4 cut(s) 72, 91, 100, 118
AspS9I GGNCC 2 cut(s) 205, 250
AsuHPI GGTGA 1 cut(s) 211
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 230
BanI GGYRCC 1 cut(s) 227
BauI CACGAG 1 cut(s) 289
BbvI GCAGC 1 cut(s) 253
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BfaI CTAG 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 119
BisI GCNGC 5 cut(s) 11, 153, 156, 242, 320
BlsI GCNGC 5 cut(s) 12, 154, 157, 243, 321
Bme18I GGWCC 1 cut(s) 250
BmeT110I CYCGRG 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 17
BmgT120I GGNCC 2 cut(s) 205, 250
BmiI GGNNCC 3 cut(s) 229, 251, 252
BmsI GCATC 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 104
BsaJI CCNNGG 3 cut(s) 111, 222, 235
BsaWI WCCGGW 2 cut(s) 179, 283
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 223, 237, 303
Bse118I RCCGGY 3 cut(s) 139, 166, 283
BseDI CCNNGG 3 cut(s) 111, 222, 235
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 4 cut(s) 112, 223, 237, 303
BseRI GAGGAG 1 cut(s) 224
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 1 cut(s) 253
BseYI CCCAGC 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 98
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 2 cut(s) 176, 206
BshNI GGYRCC 1 cut(s) 227
BshTI ACCGGT 1 cut(s) 283
BsiEI CGRYCG 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 4 cut(s) 140, 167, 180, 284
BslFI GGGAC 2 cut(s) 112, 263
BslI CCNNNNNNNGG 4 cut(s) 112, 223, 237, 303
BsmFI GGGAC 2 cut(s) 112, 263
BsnI GGCC 2 cut(s) 176, 206
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 3 cut(s) 263, 293, 301
BspACI CCGC 6 cut(s) 11, 153, 156, 258, 270, 320
BspANI GGCC 2 cut(s) 176, 206
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 3 cut(s) 229, 251, 252
BspPI GGATC 1 cut(s) 288
BspQI GCTCTTC 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 227
BsrFI RCCGGY 3 cut(s) 139, 166, 283
BssAI RCCGGY 3 cut(s) 139, 166, 283
BssECI CCNNGG 3 cut(s) 111, 222, 235
BssMI GATC 3 cut(s) 263, 293, 301
BssSI CACGAG 1 cut(s) 289
BssT1I CCWWGG 2 cut(s) 111, 222
Bst2BI CACGAG 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 270
BstC8I GCNNGC 3 cut(s) 141, 168, 196
BstENI CCTNNNNNAGG 1 cut(s) 221
BstF5I GGATG 1 cut(s) 158
BstFNI CGCG 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 4 cut(s) 72, 91, 100, 118
BstKTI GATC 3 cut(s) 266, 296, 304
BstMBI GATC 3 cut(s) 263, 293, 301
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 4 cut(s) 10, 95, 97, 149
BstSLI GKGCMC 1 cut(s) 230
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BsuRI GGCC 2 cut(s) 176, 206
BtrI CACGTC 1 cut(s) 17
BtsCI GGATG 1 cut(s) 158
Cac8I GCNNGC 3 cut(s) 141, 168, 196
CfoI GCGC 4 cut(s) 72, 91, 100, 118
Cfr10I RCCGGY 3 cut(s) 139, 166, 283
Cfr13I GGNCC 2 cut(s) 205, 250
CseI GACGC 2 cut(s) 27, 104
Csp6I GTAC 1 cut(s) 325
CspAI ACCGGT 1 cut(s) 283
CviAII CATG 1 cut(s) 209
CviQI GTAC 1 cut(s) 325
DpnI GATC 3 cut(s) 265, 295, 303
DpnII GATC 3 cut(s) 263, 293, 301
DrdI GACNNNNNNGTC 1 cut(s) 37
DseDI GACNNNNNNGTC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EciI GGCGGA 1 cut(s) 259
Eco130I CCWWGG 2 cut(s) 111, 222
Eco47I GGWCC 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 236
EcoNI CCTNNNNNAGG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 212
EcoT14I CCWWGG 2 cut(s) 111, 222
ErhI CCWWGG 2 cut(s) 111, 222
FaeI CATG 1 cut(s) 212
FaiI YATR 1 cut(s) 210
FaqI GGGAC 2 cut(s) 112, 263
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 5 cut(s) 11, 153, 156, 242, 320
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 5 cut(s) 11, 153, 156, 242, 320
FspBI CTAG 1 cut(s) 191
GlaI GCGC 4 cut(s) 71, 90, 99, 117
GluI GCNGC 5 cut(s) 11, 153, 156, 242, 320
GsaI CCCAGC 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 2 cut(s) 176, 206
HapII CCGG 4 cut(s) 140, 167, 180, 284
HgaI GACGC 2 cut(s) 27, 104
HhaI GCGC 4 cut(s) 72, 91, 100, 118
Hin1II CATG 1 cut(s) 212
Hin6I GCGC 4 cut(s) 70, 89, 98, 116
HinP1I GCGC 4 cut(s) 70, 89, 98, 116
HpaII CCGG 4 cut(s) 140, 167, 180, 284
HphI GGTGA 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 21, 163
Hpy188III TCNNGA 1 cut(s) 289
Hpy99I CGWCG 3 cut(s) 21, 31, 98
HpyCH4IV ACGT 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 95, 97, 149
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 1 cut(s) 212
HspAI GCGC 4 cut(s) 70, 89, 98, 116
KflI GGGWCCC 1 cut(s) 250
KroI GCCGGC 2 cut(s) 139, 166
KroNI GCCGGC 2 cut(s) 141, 168
Kzo9I GATC 3 cut(s) 263, 293, 301
LguI GCTCTTC 1 cut(s) 270
LpnPI CCDG 9 cut(s) 120, 153, 158, 180, 180, 193, 297, 312, 320
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 1 cut(s) 167
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 286
MalI GATC 3 cut(s) 265, 295, 303
MboI GATC 3 cut(s) 263, 293, 301
MboII GAAGA 2 cut(s) 258, 287
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 1 cut(s) 212
MnlI CCTC 4 cut(s) 187, 227, 242, 245
MroNI GCCGGC 2 cut(s) 139, 166
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 4 cut(s) 140, 167, 180, 284
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 4 cut(s) 10, 95, 97, 149
NaeI GCCGGC 2 cut(s) 141, 168
NdeII GATC 3 cut(s) 263, 293, 301
NgoMIV GCCGGC 2 cut(s) 139, 166
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 3 cut(s) 229, 251, 252
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PdiI GCCGGC 2 cut(s) 141, 168
PinAI ACCGGT 1 cut(s) 283
PkrI GCNGC 5 cut(s) 12, 154, 157, 243, 321
PpuMI RGGWCCY 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 106
PspN4I GGNNCC 3 cut(s) 229, 251, 252
PspPI GGNCC 2 cut(s) 205, 250
PspPPI RGGWCCY 1 cut(s) 250
PsuI RGATCY 1 cut(s) 293
PvuII CAGCTG 1 cut(s) 244
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SapI GCTCTTC 1 cut(s) 270
SatI GCNGC 5 cut(s) 11, 153, 156, 242, 320
Sau3AI GATC 3 cut(s) 263, 293, 301
Sau96I GGNCC 2 cut(s) 205, 250
SduI GDGCHC 1 cut(s) 230
SetI ASST 5 cut(s) 19, 126, 196, 246, 336
SfaNI GCATC 1 cut(s) 167
SinI GGWCC 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 1 cut(s) 212
SsiI CCGC 6 cut(s) 11, 153, 156, 258, 270, 320
SspMI CTAG 1 cut(s) 191
StyI CCWWGG 2 cut(s) 111, 222
TaiI ACGT 1 cut(s) 19
TaqI TCGA 3 cut(s) 26, 93, 309
TasI AATT 1 cut(s) 212
TauI GCSGC 4 cut(s) 13, 155, 158, 322
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 250
XagI CCTNNNNNAGG 1 cut(s) 221
XapI RAATTY 1 cut(s) 212
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.