AT5G44060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010790
Physical Location & Seq
Forward (+)
17731005 .. 17732298
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44060.1

Sequence Viewer

Length: 453 bp
ATGAATACAAAAACGATGCGTCTTCCCCCACGCCGAGTTACCTCCGGCGCCGTCGCCGGCAAACAAACGGAATCCGCCGTGATAAATCCACCACCGCCGCCGACTAAATCCATCGTCAAGAAAACGCCGATCATCCCTCGACCAACTACCACCGCCACTGTAGCCTTAGCCGAGCCGGTTTGTTCGAATCAGCTCTTAGCCGGTTACTTGGCTCATGAGTTTCTCAACAATGGCACACTCTTCGGAGAGCTTTGGAATCCAACTAAAGCCCAAGCCGGCCCATTAACGACCCAATCTATTGACCCTAGAAAGAATAAGCCGAGCCATGATATAGAGCCGAGTGATCATAAACGGAGGAGATATGTGGAGGTTGCTAACATACTCCGGGTAGATGGGACCCATTTGCCCGGTATCGTTAACCCGTCACAGCTTGCCCGATTCCTTAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.38

Weight (kDa)

10.28

Isoelectric Point (pI)

49.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04000 AT5G44060
fragaria_vesca FvH4_2g20950
malus_domestica MD05G1192900.v1.1 MD10G1179300.v1.1
prunus_persica Prupe.8G219100_v2.0.a1
pyrus_communis pycom05g17980 pycom10g15550
rosa_chinensis RchiOBHm_Chr6g0287331
rosa_laevigata RLG00000012498
rosa_multiflora Rmu_co8349819.1_g000001 Rmu_sc0004701.1_g000001
rosa_roxburghii Rroxscaffold_7G00181530
rosa_rugosa Rorug06G0187100
rosa_samantha Rh6AG298500 Rh6BG304100 Rh6CG305600 Rh6CG312600 Rh6DG295900
rosa_wichuraiana Rw6G025800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AciI CCGC 4 cut(s) 75, 95, 98, 153
AcyI GRCGYC 1 cut(s) 48
AluBI AGCT 3 cut(s) 193, 250, 430
AluI AGCT 3 cut(s) 193, 250, 430
AoxI GGCC 1 cut(s) 277
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 278, 396
AsuC2I CCSGG 2 cut(s) 386, 408
AsuII TTCGAA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 396
BanI GGYRCC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 14
BccI CCATC 2 cut(s) 119, 386
BceAI ACGGC 2 cut(s) 35, 62
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BclI TGATCA 1 cut(s) 343
BcnI CCSGG 2 cut(s) 386, 408
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 2 cut(s) 386, 408
Bme18I GGWCC 1 cut(s) 396
BmgT120I GGNCC 2 cut(s) 278, 396
BmiI GGNNCC 3 cut(s) 49, 397, 398
BmrFI CCNGG 2 cut(s) 386, 408
BmsI GCATC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 166
Bpu14I TTCGAA 1 cut(s) 185
BpuMI CCSGG 2 cut(s) 386, 408
BsaHI GRCGYC 1 cut(s) 48
Bse118I RCCGGY 4 cut(s) 56, 175, 200, 275
BseGI GGATG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 370
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 47
BsiSI CCGG 7 cut(s) 45, 57, 176, 201, 276, 385, 408
BslFI GGGAC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 1 cut(s) 279
Bsp119I TTCGAA 1 cut(s) 185
Bsp143I GATC 2 cut(s) 129, 343
BspACI CCGC 4 cut(s) 75, 95, 98, 153
BspANI GGCC 1 cut(s) 279
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 3 cut(s) 49, 397, 398
BspT104I TTCGAA 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 47
BsrFI RCCGGY 4 cut(s) 56, 175, 200, 275
BssAI RCCGGY 4 cut(s) 56, 175, 200, 275
BssMI GATC 2 cut(s) 129, 343
BssNI GRCGYC 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 245
BstACI GRCGYC 1 cut(s) 48
BstBI TTCGAA 1 cut(s) 185
BstC8I GCNNGC 3 cut(s) 58, 277, 432
BstDEI CTNAG 2 cut(s) 166, 196
BstF5I GGATG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 2 cut(s) 132, 346
BstMBI GATC 2 cut(s) 129, 343
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstSCI CCNGG 2 cut(s) 384, 406
BstSFI CTRYAG 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 14
BsuRI GGCC 1 cut(s) 279
BtsCI GGATG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 3 cut(s) 58, 277, 432
CciI TCATGA 1 cut(s) 214
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 4 cut(s) 56, 175, 200, 275
Cfr13I GGNCC 2 cut(s) 278, 396
CseI GACGC 1 cut(s) 8
CviAII CATG 2 cut(s) 215, 326
DdeI CTNAG 2 cut(s) 166, 196
DinI GGCGCC 1 cut(s) 49
DpnI GATC 2 cut(s) 131, 345
DpnII GATC 2 cut(s) 129, 343
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
EciI GGCGGA 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 396
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
FaeI CATG 2 cut(s) 218, 329
FaiI YATR 6 cut(s) 216, 327, 332, 348, 363, 380
FaqI GGGAC 1 cut(s) 409
FatI CATG 2 cut(s) 214, 325
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 1 cut(s) 306
GlaI GCGC 1 cut(s) 49
GluI GCNGC 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 1 cut(s) 279
HapII CCGG 7 cut(s) 45, 57, 176, 201, 276, 385, 408
HgaI GACGC 1 cut(s) 8
HhaI GCGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 2 cut(s) 218, 329
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 4 cut(s) 71, 187, 256, 438
HpaI GTTAAC 1 cut(s) 418
HpaII CCGG 7 cut(s) 45, 57, 176, 201, 276, 385, 408
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 1 cut(s) 245
Hpy188III TCNNGA 2 cut(s) 118, 215
Hpy8I GTNNAC 1 cut(s) 418
Hpy99I CGWCG 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 166, 196
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 2 cut(s) 218, 329
HspAI GCGC 1 cut(s) 48
KasI GGCGCC 1 cut(s) 47
KflI GGGWCCC 1 cut(s) 396
KroI GCCGGC 2 cut(s) 56, 275
KroNI GCCGGC 2 cut(s) 58, 277
Ksp22I TGATCA 1 cut(s) 343
KspAI GTTAAC 1 cut(s) 418
Kzo9I GATC 2 cut(s) 129, 343
LpnPI CCDG 7 cut(s) 58, 70, 189, 214, 289, 398, 421
LweI GCATC 1 cut(s) 6
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 3 cut(s) 37, 203, 423
MalI GATC 2 cut(s) 131, 345
MboI GATC 2 cut(s) 129, 343
MboII GAAGA 2 cut(s) 14, 232
MluCI AATT 1 cut(s) 446
Mly113I GGCGCC 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 4 cut(s) 52, 147, 348, 361
MroNI GCCGGC 2 cut(s) 56, 275
MseI TTAA 3 cut(s) 284, 417, 444
MspI CCGG 7 cut(s) 45, 57, 176, 201, 276, 385, 408
MspR9I CCNGG 2 cut(s) 386, 408
MwoI GCNNNNNNNGC 1 cut(s) 161
NaeI GCCGGC 2 cut(s) 58, 277
NarI GGCGCC 1 cut(s) 48
NciI CCSGG 2 cut(s) 386, 408
NdeII GATC 2 cut(s) 129, 343
NgoMIV GCCGGC 2 cut(s) 56, 275
NlaIII CATG 2 cut(s) 218, 329
NlaIV GGNNCC 3 cut(s) 49, 397, 398
NmeAIII GCCGAG 4 cut(s) 59, 196, 345, 363
NmuCI GTSAC 1 cut(s) 423
NspV TTCGAA 1 cut(s) 185
PagI TCATGA 1 cut(s) 214
PdiI GCCGGC 2 cut(s) 58, 277
PfeI GAWTC 4 cut(s) 71, 187, 256, 438
PkrI GCNGC 1 cut(s) 99
PluTI GGCGCC 1 cut(s) 51
PpuMI RGGWCCY 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 396
PspN4I GGNNCC 3 cut(s) 49, 397, 398
PspPI GGNCC 2 cut(s) 278, 396
PspPPI RGGWCCY 1 cut(s) 396
SaqAI TTAA 3 cut(s) 284, 417, 444
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 2 cut(s) 129, 343
Sau96I GGNCC 2 cut(s) 278, 396
ScrFI CCNGG 2 cut(s) 386, 408
SetI ASST 5 cut(s) 44, 195, 252, 372, 432
SfaNI GCATC 1 cut(s) 6
SfcI CTRYAG 1 cut(s) 159
SfoI GGCGCC 1 cut(s) 49
SfuI TTCGAA 1 cut(s) 185
SinI GGWCC 1 cut(s) 396
Sse9I AATT 1 cut(s) 446
SsiI CCGC 4 cut(s) 75, 95, 98, 153
SspDI GGCGCC 1 cut(s) 47
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 384, 406
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 139, 185
TasI AATT 1 cut(s) 446
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 4 cut(s) 71, 187, 256, 438
Tru1I TTAA 3 cut(s) 284, 417, 444
Tru9I TTAA 3 cut(s) 284, 417, 444
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 423
Tsp45I GTSAC 1 cut(s) 423
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 83, 367
TspRI CASTG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 396
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.