Prupe.8G219100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0010790
Physical Location & Seq
Forward (+)
19963347 .. 19964445
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G219100.1

Sequence Viewer

Length: 441 bp
ATGAACACCAAAACGATGCGTTTGCCACCTCGTCGGATTTCGACGACCAATGCGTCAAATAACAACAAGCGCAAAGAGAAGGAGAGTGGCTTCGACGCGCTCCACCAGTCAACAACAACAAAGATGCTCAAGCTGGCCCCACCGCCTCAAGCCGGCTCCAACAGTCCACCGGAGCCGGCTTCGTCCGACCAACTCCTCGCCGGCTATTTGGCGCACGAGTTCCTAACCAAGGGCACCCTCCTAGGGCAGTCGTGGGACACATACAAAGCCGAGCCGGCCCCAGGGCCTCCGGGTGATGAAGCCGAGCCGAGTTCGGGAGCCGAGCCGAATCTTGAGAACTTGGAGAGATACGTGGAAGTTGCTGATTTGCTGAAGACGGATGGGGCCCACTTAGCTGGCATTGTCAACCCAACTCAGCTCGCTCGCGTTTTACAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

15.71

Weight (kDa)

5.91

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04000 AT5G44060
fragaria_vesca FvH4_2g20950
malus_domestica MD05G1192900.v1.1 MD10G1179300.v1.1
prunus_persica Prupe.8G219100_v2.0.a1
pyrus_communis pycom05g17980 pycom10g15550
rosa_chinensis RchiOBHm_Chr6g0287331
rosa_laevigata RLG00000012498
rosa_multiflora Rmu_co8349819.1_g000001 Rmu_sc0004701.1_g000001
rosa_roxburghii Rroxscaffold_7G00181530
rosa_rugosa Rorug06G0187100
rosa_samantha Rh6AG298500 Rh6BG304100 Rh6CG305600 Rh6CG312600 Rh6DG295900
rosa_wichuraiana Rw6G025800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AccB1I GGYRCC 1 cut(s) 233
AccII CGCG 2 cut(s) 98, 426
AciI CCGC 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 392
AfiI CCNNNNNNNGG 5 cut(s) 152, 229, 243, 281, 314
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 3 cut(s) 133, 395, 418
AluI AGCT 3 cut(s) 133, 395, 418
AoxI GGCC 4 cut(s) 135, 276, 284, 384
ApaI GGGCCC 1 cut(s) 388
AspA2I CCTAGG 1 cut(s) 241
AspLEI GCGC 3 cut(s) 72, 100, 214
AspS9I GGNCC 5 cut(s) 136, 277, 284, 384, 385
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 305
AvrII CCTAGG 1 cut(s) 241
BaeGI GKGCMC 2 cut(s) 236, 388
BanI GGYRCC 1 cut(s) 233
BanII GRGCYC 1 cut(s) 388
BauI CACGAG 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 380
BccI CCATC 1 cut(s) 374
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 1 cut(s) 282
BcnI CCSGG 1 cut(s) 291
BfaI CTAG 1 cut(s) 242
BglI GCCNNNNNGGC 1 cut(s) 275
BlnI CCTAGG 1 cut(s) 241
Bme1390I CCNGG 2 cut(s) 282, 291
BmgT120I GGNCC 5 cut(s) 136, 277, 284, 384, 385
BmiI GGNNCC 8 cut(s) 138, 157, 174, 235, 279, 319, 385, 386
BmrFI CCNGG 2 cut(s) 282, 291
BmsI GCATC 2 cut(s) 6, 114
BpiI GAAGAC 1 cut(s) 380
BpuEI CTTGAG 3 cut(s) 113, 132, 353
BpuMI CCSGG 1 cut(s) 291
BsaAI YACGTR 1 cut(s) 352
BsaJI CCNNGG 4 cut(s) 228, 241, 280, 281
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 5 cut(s) 152, 229, 243, 281, 314
Bse118I RCCGGY 4 cut(s) 152, 175, 200, 274
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 4 cut(s) 228, 241, 280, 281
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 5 cut(s) 152, 229, 243, 281, 314
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 185
BseSI GKGCMC 2 cut(s) 236, 388
Bsh1236I CGCG 2 cut(s) 98, 426
BshFI GGCC 4 cut(s) 137, 278, 286, 386
BshNI GGYRCC 1 cut(s) 233
BsiSI CCGG 6 cut(s) 153, 170, 176, 201, 275, 290
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 5 cut(s) 152, 229, 243, 281, 314
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 4 cut(s) 137, 278, 286, 386
Bsp120I GGGCCC 1 cut(s) 384
Bsp1286I GDGCHC 2 cut(s) 236, 388
BspACI CCGC 1 cut(s) 143
BspANI GGCC 4 cut(s) 137, 278, 286, 386
BspCNI CTCAG 1 cut(s) 427
BspFNI CGCG 2 cut(s) 98, 426
BspLI GGNNCC 8 cut(s) 138, 157, 174, 235, 279, 319, 385, 386
BspT107I GGYRCC 1 cut(s) 233
BsrFI RCCGGY 4 cut(s) 152, 175, 200, 274
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 4 cut(s) 152, 175, 200, 274
BssECI CCNNGG 4 cut(s) 228, 241, 280, 281
BssSI CACGAG 1 cut(s) 215
BssT1I CCWWGG 2 cut(s) 228, 241
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 164, 435
BstBAI YACGTR 1 cut(s) 352
BstC8I GCNNGC 8 cut(s) 135, 154, 177, 202, 276, 397, 420, 424
BstDEI CTNAG 2 cut(s) 391, 414
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 2 cut(s) 98, 426
BstHHI GCGC 3 cut(s) 72, 100, 214
BstMWI GCNNNNNNNGC 2 cut(s) 275, 392
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 280, 289
BstSLI GKGCMC 2 cut(s) 236, 388
BstUI CGCG 2 cut(s) 98, 426
BstV2I GAAGAC 1 cut(s) 380
BstXI CCANNNNNNTGG 1 cut(s) 395
BsuRI GGCC 4 cut(s) 137, 278, 286, 386
BtsCI GGATG 1 cut(s) 385
Cac8I GCNNGC 8 cut(s) 135, 154, 177, 202, 276, 397, 420, 424
CfoI GCGC 3 cut(s) 72, 100, 214
Cfr10I RCCGGY 4 cut(s) 152, 175, 200, 274
Cfr13I GGNCC 5 cut(s) 136, 277, 284, 384, 385
CseI GACGC 2 cut(s) 42, 104
DdeI CTNAG 2 cut(s) 391, 414
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
Eco130I CCWWGG 2 cut(s) 228, 241
Eco24I GRGCYC 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 392
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoO109I RGGNCCY 2 cut(s) 284, 384
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 228, 241
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 2 cut(s) 228, 241
FaiI YATR 1 cut(s) 262
FaqI GGGAC 1 cut(s) 269
FokI GGATG 1 cut(s) 392
FriOI GRGCYC 1 cut(s) 388
FspBI CTAG 1 cut(s) 242
GlaI GCGC 3 cut(s) 71, 99, 213
HaeIII GGCC 4 cut(s) 137, 278, 286, 386
HapII CCGG 6 cut(s) 153, 170, 176, 201, 275, 290
HgaI GACGC 2 cut(s) 42, 104
HhaI GCGC 3 cut(s) 72, 100, 214
Hin6I GCGC 3 cut(s) 70, 98, 212
HinP1I GCGC 3 cut(s) 70, 98, 212
HincII GTYRAC 2 cut(s) 111, 406
HindII GTYRAC 2 cut(s) 111, 406
HinfI GANTC 1 cut(s) 328
HpaII CCGG 6 cut(s) 153, 170, 176, 201, 275, 290
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 3 cut(s) 111, 167, 406
Hpy188I TCNGA 2 cut(s) 36, 187
Hpy188III TCNNGA 2 cut(s) 315, 332
Hpy8I GTNNAC 3 cut(s) 111, 167, 406
Hpy99I CGWCG 3 cut(s) 36, 46, 98
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 2 cut(s) 164, 435
HpyCH4IV ACGT 1 cut(s) 351
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 392
HpyF3I CTNAG 2 cut(s) 391, 414
HpySE526I ACGT 1 cut(s) 351
HspAI GCGC 3 cut(s) 70, 98, 212
KroI GCCGGC 4 cut(s) 152, 175, 200, 274
KroNI GCCGGC 4 cut(s) 154, 177, 202, 276
LmnI GCTCC 4 cut(s) 105, 161, 172, 317
LweI GCATC 2 cut(s) 6, 114
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 351
MboII GAAGA 1 cut(s) 385
MhlI GDGCHC 2 cut(s) 236, 388
MmeI TCCRAC 3 cut(s) 14, 183, 210
MnlI CCTC 5 cut(s) 39, 156, 206, 248, 297
MroNI GCCGGC 4 cut(s) 152, 175, 200, 274
MspI CCGG 6 cut(s) 153, 170, 176, 201, 275, 290
MspR9I CCNGG 2 cut(s) 282, 291
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 2 cut(s) 98, 426
MwoI GCNNNNNNNGC 2 cut(s) 275, 392
NaeI GCCGGC 4 cut(s) 154, 177, 202, 276
NciI CCSGG 1 cut(s) 291
NgoMIV GCCGGC 4 cut(s) 152, 175, 200, 274
NlaIV GGNNCC 8 cut(s) 138, 157, 174, 235, 279, 319, 385, 386
NmeAIII GCCGAG 4 cut(s) 295, 328, 333, 346
PasI CCCWGGG 1 cut(s) 281
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PdiI GCCGGC 4 cut(s) 154, 177, 202, 276
PfeI GAWTC 1 cut(s) 328
Ppu21I YACGTR 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 8 cut(s) 138, 157, 174, 235, 279, 319, 385, 386
PspOMI GGGCCC 1 cut(s) 384
PspPI GGNCC 5 cut(s) 136, 277, 284, 384, 385
Sau96I GGNCC 5 cut(s) 136, 277, 284, 384, 385
ScrFI CCNGG 2 cut(s) 282, 291
SduI GDGCHC 2 cut(s) 236, 388
SetI ASST 5 cut(s) 31, 135, 354, 397, 420
SfaNI GCATC 2 cut(s) 6, 114
SmlI CTYRAG 3 cut(s) 128, 147, 332
SmoI CTYRAG 3 cut(s) 128, 147, 332
SsiI CCGC 1 cut(s) 143
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 2 cut(s) 280, 289
StyI CCWWGG 2 cut(s) 228, 241
TaaI ACNGT 2 cut(s) 164, 435
TaiI ACGT 1 cut(s) 354
TaqI TCGA 2 cut(s) 41, 93
TfiI GAWTC 1 cut(s) 328
TspDTI ATGAA 2 cut(s) 17, 312
TspGWI ACGGA 1 cut(s) 392
XagI CCTNNNNNAGG 1 cut(s) 227
XmaJI CCTAGG 1 cut(s) 241
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.