AT1G04020

breast cancer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007909
Physical Location & Seq
Forward (+)
1036493 .. 1040262
3770 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04020.2

Sequence Viewer

Length: 2142 bp
ATGGCGGAATTTACTAACATGCTAATGAATCCATGGGTTCTTCATCTCCAGAAGCTCGAGCTCGAGCTCAAGTGCCCTCTATGCTTAAAATTGCTTAATCGACCGGTGTTGCTTCCTTGCGACCACGTCTTCTGCGATTCATGTGTACACAAATCGTCGCAAGTTGAATCGGGATGTCCTGTCTGCAAATCTAAACATCCCAAAAAGGCTAGGAGAGATCTTCGATTCATGGAGAGTGTTATAAGCATATACAAGAGCTTGAATGCAGCTGTTAGTGTTCATCTCCCACAATTACAGATTCCAAATGATTGCAACTACAAGAACGATGCATTGAACAATTCCAACAGCCCTAAACATGGCGAATCTGAAGATTCTGAGATGACTGACAAGGATGTGAGCAAGCGCAGTGGTGGTACTGATTCTTCTAGTCGTGATGGTTCTCCTCTTCCGACCTCAGAAGAAAGTGATCCAAGACCTAAGCATCAGGATTGGACTGAAAAGCAGTTGAGTGATCATCTCCTATTATATGAGTTTGAATCAGAGTATGATGCTGCCAATCACACTCCGGAAAGTTATACAGAACAAGCTGCAAAAAATGTGAGGGACATCACTGCTTCTGAGCAGCCTAGCAATGCTGCAAGGAAGCGGATATGTGGTGATTCCTTTATCCAGGAAAGCAGTCCGAATCCTAAGACTCAGGATCCGACTTTGCTGCGGTTGATGGAGAGCCTCCGGTCAGATGATCCCACTGATTATGTTAAAGCACAGAACCATCAGTTACCCAAAAGTCATACAGAACAAGATTCAAAAAGGAAGCGTGACATCACCGCTTCTGATGCAATGGAAAATCATCTGAAGGTCCCCAAGAGGGAGAATAATCTGATGCAAAAATCTGCTGATATTGACTGCAATGGTAAATGCTCTGCAAACTCTGATGATCAGCTAAGTGAGAAAATCTCAAAGGCATTAGAACAAACATCATCCAACATAACCATTTGTGGTTTCTGCCAATCCGCTAGGGTATCTGAGGCCACTGGAGAAATGCTGCATTACTCTAGGGGAAGACCGGTGGATGGAGATGACATCTTCCGCTCCAATGTTATCCATGTCCATAGCGCATGTATCGAATGGGCACCGCAAGTTTACTATGAAGGTGACACAGTGAAGAACCTGAAAGCAGAACTGGCAAGGGGGATGAAAATCAAGTGCACTAAATGTAGTCTGAAAGGTGCTGCCTTAGGCTGCTTTGTCAAGTCTTGCCGTCGAAGCTATCATGTTCCATGTGCAAGAGAGATTTCTAGATGCCGTTGGGATTATGAAGATTTTCTTCTACTTTGTCCGGCTCATTCTTCTGTCAAATTCCCGAACGAGAAGTCTGGACATCGCGTTTCCAGAGCCGAGCCCTTACCAAAAATAAATCCTGCTGAGCTATGTTCTTTGGAACAAACACCAGCTTTTACAAAAGAGCTTGTTCTCTGTGGATCAGCACTCTCTAAAAGTGATAAGAAACTGATGGAAAGTTTAGCCGTTCGATTTAACGCGACCATATCAAGGTACTGGAACCCAAGTGTTACACATGTGATTGCTTCTACAGATGAAAAAGGAGCTTGCACAAGAACTTTGAAGGTTCTTATGGGTATTCTCAATGGAAAATGGATTATCAATGCAGCTTGGATGAAAGCAAGCCTAAAAGCTTCTCAACCTGTTGATGAAGAACCATTCGAGATTCAAATTGATACTCAAGGATGTCAAGATGGACCAAAAACCGCAAGACTCAGAGCAGAAACTAATAAACCAAAGCTCTTTGAGGGCTTGAAGTTCTATTTCTTTGGAGATTTCTATAAAGGATACAAGGAAGACCTTCAGAATCTAGTCAAAGTCGCTGGTGGTACAATCTTGAACACAGAGGATGAGCTTGGTGCAGAAAGCAGCAACAATGTCAATGACCAAAGATCATCATCGATTGTGGTTTACAACATTGATCCTCCACATGGATGTGCCTTAGGTGAAGAAGTCACAATCATTTGGCAACGAGCTAATGACGCAGAAGCTTTAGCAAGCCAAACTGGGTCTCGTCTCGTTGGTCACACATGGGTCTTGGAGTCCATTGCTGGTTACAAGTTACATCCTGTGATTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000152 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009934 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010212 GO:0010332 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010565 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0010639 GO:0016020 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019827 GO:0022603 GO:0022607 GO:0022622 GO:0031056 GO:0031057 GO:0031058 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031401 GO:0031436 GO:0032259 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034622 GO:0034641 GO:0034968 GO:0035065 GO:0035066 GO:0035067 GO:0036211 GO:0042127 GO:0042304 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045717 GO:0045787 GO:0045833 GO:0045892 GO:0045893 GO:0045922 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046890 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051055 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051716 GO:0051726 GO:0060255 GO:0062012 GO:0062014 GO:0065003 GO:0065004 GO:0065007 GO:0070531 GO:0070647 GO:0071156 GO:0071158 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0080090 GO:0080182 GO:0090068 GO:0090304 GO:0097159 GO:0098727 GO:0099402 GO:0104004 GO:0140096 GO:1901360 GO:1901363 GO:1901564 GO:1901983 GO:1901984 GO:1901985 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1905269 GO:1905392 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2000758 GO:2001141 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03440 ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map03440 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169
Pfam Domains
Protein Families
BRCT BRCT_2 PTCB-BRCT zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-HC5HC2H zf-RING_UBOX

Protein Analysis

713

Amino Acids

79.56

Weight (kDa)

6.53

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_6 PF14835 17 - 63 1e-06 zf-RING of BARD1-type protein
zf-C3HC4_3 PF13920 23 - 65 3.8e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 24 - 62 9.2e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 24 - 63 3.9e-06 zinc-RING finger domain
zf-RING_2 PF13639 24 - 63 8e-06 Ring finger domain
zf-RING_UBOX PF13445 25 - 62 3.9e-07 RING-type zinc-finger
zf-C3HC4 PF00097 25 - 62 7.2e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4 PF15227 25 - 62 4.1e-06 zinc finger of C3HC4-type, RING
zf-HC5HC2H PF13771 371 - 450 7e-10 PHD-like zinc-binding domain
BRCT PF00533 492 - 563 6.7e-09 BRCA1 C Terminus (BRCT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 1132
AccBSI CCGCTC 1 cut(s) 1092
AccII CGCG 2 cut(s) 1386, 1541
AccIII TCCGGA 1 cut(s) 565
AciI CCGC 8 cut(s) 5, 646, 715, 828, 1014, 1090, 1136, 1767
AclWI GGATC 6 cut(s) 461, 695, 708, 737, 1489, 1976
AcsI RAATTY 2 cut(s) 8, 1358
AcuI CTGAAG 3 cut(s) 387, 875, 1847
AfaI GTAC 4 cut(s) 147, 415, 1556, 1891
AfiI CCNNNNNNNGG 6 cut(s) 356, 868, 1073, 1551, 1991, 2135
AflIII ACRYGT 1 cut(s) 1576
AgeI ACCGGT 2 cut(s) 103, 1066
AgsI TTSAA 9 cut(s) 167, 262, 334, 536, 807, 1624, 1730, 1816, 1900
AjiI CACGTC 1 cut(s) 127
AjnI CCWGG 1 cut(s) 669
Alw21I GWGCWC 3 cut(s) 63, 69, 1211
Alw26I GTCTC 2 cut(s) 2076, 2081
Alw44I GTGCAC 1 cut(s) 1207
AlwI GGATC 6 cut(s) 461, 695, 708, 737, 1489, 1976
Ama87I CYCGRG 2 cut(s) 56, 62
Aor13HI TCCGGA 1 cut(s) 565
AoxI GGCC 1 cut(s) 1029
ApaLI GTGCAC 1 cut(s) 1207
ApoI RAATTY 2 cut(s) 8, 1358
ArsI GACNNNNNNTTYG 2 cut(s) 1358, 1390
AsiGI ACCGGT 2 cut(s) 103, 1066
Asp700I GAANNNNTTC 2 cut(s) 1323, 1860
AspLEI GCGC 2 cut(s) 405, 1118
AspS9I GGNCC 2 cut(s) 859, 1757
AsuHPI GGTGA 4 cut(s) 668, 817, 1166, 2018
AvaI CYCGRG 2 cut(s) 56, 62
AvaII GGWCC 2 cut(s) 859, 1757
AxyI CCTNAGG 2 cut(s) 1237, 2002
BaeGI GKGCMC 3 cut(s) 77, 1135, 1211
BamHI GGATCC 1 cut(s) 700
BanI GGYRCC 1 cut(s) 1132
BanII GRGCYC 3 cut(s) 63, 69, 1404
BarI GAAGNNNNNNTAC 2 cut(s) 406, 438
BbsI GAAGAC 3 cut(s) 121, 1069, 1863
Bbv12I GWGCWC 3 cut(s) 63, 69, 1211
BccI CCATC 6 cut(s) 428, 715, 780, 1067, 1507, 1748
BceAI ACGGC 3 cut(s) 1245, 1290, 1511
BcgI CGANNNNNNTGC 2 cut(s) 694, 728
BciT130I CCWGG 1 cut(s) 671
BciVI GTATCC 1 cut(s) 1841
BclI TGATCA 2 cut(s) 511, 937
BcoDI GTCTC 2 cut(s) 2076, 2081
BfaI CTAG 7 cut(s) 210, 426, 627, 1017, 1056, 1299, 1871
BfmI CTRYAG 1 cut(s) 1590
BfuI GTATCC 1 cut(s) 1841
BglII AGATCT 1 cut(s) 217
BlpI GCTNAGC 1 cut(s) 1425
Bme1390I CCNGG 1 cut(s) 671
Bme18I GGWCC 2 cut(s) 859, 1757
BmeT110I CYCGRG 2 cut(s) 56, 62
BmgBI CACGTC 1 cut(s) 127
BmgT120I GGNCC 2 cut(s) 859, 1757
BmiI GGNNCC 4 cut(s) 702, 861, 1134, 1562
BmrFI CCNGG 1 cut(s) 671
BmrI ACTGGG 1 cut(s) 2076
BmsI GCATC 6 cut(s) 316, 490, 538, 826, 873, 1292
BmuI ACTGGG 1 cut(s) 2076
BpiI GAAGAC 3 cut(s) 121, 1069, 1863
BplI GAGNNNNNCTC 2 cut(s) 941, 973
BpmI CTGGAG 2 cut(s) 32, 1056
Bpu10I CCTNAGC 1 cut(s) 477
Bpu1102I GCTNAGC 1 cut(s) 1425
BpuEI CTTGAG 2 cut(s) 53, 1725
Bsa29I ATCGAT 1 cut(s) 1961
BsaBI GATNNNNATC 2 cut(s) 1199, 1957
BsaI GGTCTC 1 cut(s) 2076
BsaJI CCNNGG 1 cut(s) 32
BsaWI WCCGGW 4 cut(s) 103, 565, 732, 1066
Bsc4I CCNNNNNNNGG 6 cut(s) 356, 868, 1073, 1551, 1991, 2135
Bse118I RCCGGY 2 cut(s) 103, 1066
Bse1I ACTGG 4 cut(s) 1039, 1188, 1562, 2071
Bse21I CCTNAGG 2 cut(s) 1237, 2002
Bse3DI GCAATG 4 cut(s) 637, 846, 916, 2106
Bse8I GATNNNNATC 2 cut(s) 1199, 1957
BseAI TCCGGA 1 cut(s) 565
BseBI CCWGG 1 cut(s) 671
BseCI ATCGAT 1 cut(s) 1961
BseDI CCNNGG 1 cut(s) 32
BseJI GATNNNNATC 2 cut(s) 1199, 1957
BseLI CCNNNNNNNGG 6 cut(s) 356, 868, 1073, 1551, 1991, 2135
BseMI GCAATG 4 cut(s) 637, 846, 916, 2106
BseMII CTCAG 7 cut(s) 366, 468, 609, 710, 1017, 1416, 1789
BseNI ACTGG 4 cut(s) 1039, 1188, 1562, 2071
BseRI GAGGAG 1 cut(s) 432
BseSI GKGCMC 3 cut(s) 77, 1135, 1211
BsgI GTGCAG 1 cut(s) 1941
Bsh1236I CGCG 2 cut(s) 1386, 1541
Bsh1285I CGRYCG 1 cut(s) 104
BshFI GGCC 1 cut(s) 1031
BshNI GGYRCC 1 cut(s) 1132
BshTI ACCGGT 2 cut(s) 103, 1066
BshVI ATCGAT 1 cut(s) 1961
BsiEI CGRYCG 1 cut(s) 104
BsiHKAI GWGCWC 3 cut(s) 63, 69, 1211
BsiHKCI CYCGRG 2 cut(s) 56, 62
BsiSI CCGG 5 cut(s) 104, 566, 733, 1067, 1340
BslFI GGGAC 2 cut(s) 617, 845
BslI CCNNNNNNNGG 6 cut(s) 356, 868, 1073, 1551, 1991, 2135
BsmAI GTCTC 2 cut(s) 2076, 2081
BsmBI CGTCTC 1 cut(s) 2081
BsmFI GGGAC 2 cut(s) 617, 845
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 1 cut(s) 1031
Bso31I GGTCTC 1 cut(s) 2076
BsoBI CYCGRG 2 cut(s) 56, 62
Bsp1286I GDGCHC 6 cut(s) 63, 69, 77, 1135, 1211, 1404
Bsp13I TCCGGA 1 cut(s) 565
Bsp1407I TGTACA 1 cut(s) 145
Bsp143I GATC 9 cut(s) 217, 466, 511, 700, 742, 937, 1481, 1952, 1981
Bsp1720I GCTNAGC 1 cut(s) 1425
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 8 cut(s) 5, 646, 715, 828, 1014, 1090, 1136, 1767
BspANI GGCC 1 cut(s) 1031
BspCNI CTCAG 7 cut(s) 367, 467, 610, 709, 1018, 1417, 1788
BspDI ATCGAT 1 cut(s) 1961
BspEI TCCGGA 1 cut(s) 565
BspFNI CGCG 2 cut(s) 1386, 1541
BspLI GGNNCC 4 cut(s) 702, 861, 1134, 1562
BspPI GGATC 6 cut(s) 461, 695, 708, 737, 1489, 1976
BspT107I GGYRCC 1 cut(s) 1132
BspTNI GGTCTC 1 cut(s) 2076
BsrBI CCGCTC 1 cut(s) 1092
BsrDI GCAATG 4 cut(s) 637, 846, 916, 2106
BsrFI RCCGGY 2 cut(s) 103, 1066
BsrGI TGTACA 1 cut(s) 145
BsrI ACTGG 4 cut(s) 1039, 1188, 1562, 2071
BssAI RCCGGY 2 cut(s) 103, 1066
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 9 cut(s) 217, 466, 511, 700, 742, 937, 1481, 1952, 1981
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 1 cut(s) 1162
Bst6I CTCTTC 1 cut(s) 450
BstAUI TGTACA 1 cut(s) 145
BstC8I GCNNGC 4 cut(s) 401, 1609, 1684, 2059
BstDSI CCRYGG 1 cut(s) 32
BstFNI CGCG 2 cut(s) 1386, 1541
BstHHI GCGC 2 cut(s) 405, 1118
BstKTI GATC 9 cut(s) 220, 469, 514, 703, 745, 940, 1484, 1955, 1984
BstMAI GTCTC 2 cut(s) 2076, 2081
BstMBI GATC 9 cut(s) 217, 466, 511, 700, 742, 937, 1481, 1952, 1981
BstMCI CGRYCG 1 cut(s) 104
BstMWI GCNNNNNNNGC 5 cut(s) 81, 836, 1184, 1266, 2042
BstNI CCWGG 1 cut(s) 671
BstNSI RCATGY 3 cut(s) 22, 1122, 1580
BstSCI CCNGG 1 cut(s) 669
BstSFI CTRYAG 1 cut(s) 1590
BstSLI GKGCMC 3 cut(s) 77, 1135, 1211
BstUI CGCG 2 cut(s) 1386, 1541
BstV2I GAAGAC 3 cut(s) 121, 1069, 1863
BstX2I RGATCY 2 cut(s) 217, 700
BstYI RGATCY 2 cut(s) 217, 700
Bsu15I ATCGAT 1 cut(s) 1961
Bsu36I CCTNAGG 2 cut(s) 1237, 2002
BsuI GTATCC 1 cut(s) 1841
BsuRI GGCC 1 cut(s) 1031
BsuTUI ATCGAT 1 cut(s) 1961
BtgI CCRYGG 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 1367
BtrI CACGTC 1 cut(s) 127
BtsI GCAGTG 2 cut(s) 412, 609
BtsIMutI CAGTG 5 cut(s) 412, 609, 747, 1032, 1167
Cac8I GCNNGC 4 cut(s) 401, 1609, 1684, 2059
CfoI GCGC 2 cut(s) 405, 1118
Cfr10I RCCGGY 2 cut(s) 103, 1066
Cfr13I GGNCC 2 cut(s) 859, 1757
ClaI ATCGAT 1 cut(s) 1961
CseI GACGC 1 cut(s) 2051
Csp6I GTAC 4 cut(s) 146, 414, 1555, 1890
CspAI ACCGGT 2 cut(s) 103, 1066
CspCI CAANNNNNGTGG 2 cut(s) 388, 423
CviQI GTAC 4 cut(s) 146, 414, 1555, 1890
DpnI GATC 9 cut(s) 219, 468, 513, 702, 744, 939, 1483, 1954, 1983
DpnII GATC 9 cut(s) 217, 466, 511, 700, 742, 937, 1481, 1952, 1981
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 61, 67
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 3 cut(s) 63, 69, 1404
Eco31I GGTCTC 1 cut(s) 2076
Eco47I GGWCC 2 cut(s) 859, 1757
Eco53kI GAGCTC 2 cut(s) 61, 67
Eco57I CTGAAG 3 cut(s) 387, 875, 1847
Eco81I CCTNAGG 2 cut(s) 1237, 2002
Eco88I CYCGRG 2 cut(s) 56, 62
EcoICRI GAGCTC 2 cut(s) 61, 67
EcoO109I RGGNCCY 1 cut(s) 859
EcoRII CCWGG 1 cut(s) 669
EcoT14I CCWWGG 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 331
EcoT38I GRGCYC 3 cut(s) 63, 69, 1404
ErhI CCWWGG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 2081
FalI AAGNNNNNCTT 2 cut(s) 1311, 1343
FaqI GGGAC 2 cut(s) 617, 845
FbaI TGATCA 2 cut(s) 511, 937
FriOI GRGCYC 3 cut(s) 63, 69, 1404
FspBI CTAG 7 cut(s) 210, 426, 627, 1017, 1056, 1299, 1871
GlaI GCGC 2 cut(s) 404, 1117
GsuI CTGGAG 2 cut(s) 32, 1056
HaeIII GGCC 1 cut(s) 1031
HapII CCGG 5 cut(s) 104, 566, 733, 1067, 1340
HgaI GACGC 1 cut(s) 2051
HhaI GCGC 2 cut(s) 405, 1118
Hin6I GCGC 2 cut(s) 403, 1116
HinP1I GCGC 2 cut(s) 403, 1116
HindIII AAGCTT 2 cut(s) 1692, 2049
HpaII CCGG 5 cut(s) 104, 566, 733, 1067, 1340
HphI GGTGA 4 cut(s) 668, 817, 1166, 2018
Hpy166II GTNNAC 5 cut(s) 146, 148, 1144, 1209, 1972
Hpy8I GTNNAC 5 cut(s) 146, 148, 1144, 1209, 1972
Hpy99I CGWCG 2 cut(s) 160, 1266
HpyAV CCTTC 4 cut(s) 850, 1145, 1618, 1871
HpyCH4III ACNGT 1 cut(s) 1162
HpyCH4IV ACGT 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 5 cut(s) 81, 836, 1184, 1266, 2042
HpySE526I ACGT 1 cut(s) 126
HspAI GCGC 2 cut(s) 403, 1116
Kpn2I TCCGGA 1 cut(s) 565
Ksp22I TGATCA 2 cut(s) 511, 937
Kzo9I GATC 9 cut(s) 217, 466, 511, 700, 742, 937, 1481, 1952, 1981
LmnI GCTCC 2 cut(s) 1097, 1604
LweI GCATC 6 cut(s) 316, 490, 538, 826, 873, 1292
MaeI CTAG 7 cut(s) 210, 426, 627, 1017, 1056, 1299, 1871
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 8 cut(s) 777, 818, 1154, 1570, 2014, 2084, 2114, 2121
MalI GATC 9 cut(s) 219, 468, 513, 702, 744, 939, 1483, 1954, 1983
MbiI CCGCTC 1 cut(s) 1092
MboI GATC 9 cut(s) 217, 466, 511, 700, 742, 937, 1481, 1952, 1981
MflI RGATCY 2 cut(s) 217, 700
MhlI GDGCHC 6 cut(s) 63, 69, 77, 1135, 1211, 1404
MluCI AATT 6 cut(s) 8, 89, 290, 337, 1358, 1731
MlyI GAGTC 3 cut(s) 688, 1767, 2111
MmeI TCCRAC 4 cut(s) 366, 473, 728, 1008
Mph1103I ATGCAT 1 cut(s) 331
MroI TCCGGA 1 cut(s) 565
MroXI GAANNNNTTC 2 cut(s) 1323, 1860
MseI TTAA 4 cut(s) 86, 96, 759, 1536
MslI CAYNNNNRTG 3 cut(s) 23, 1993, 1995
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 5 cut(s) 104, 566, 733, 1067, 1340
MspR9I CCNGG 1 cut(s) 671
Mva1269I GAATGC 1 cut(s) 268
MvaI CCWGG 1 cut(s) 671
MvnI CGCG 2 cut(s) 1386, 1541
MwoI GCNNNNNNNGC 5 cut(s) 81, 836, 1184, 1266, 2042
NcoI CCATGG 1 cut(s) 32
NdeII GATC 9 cut(s) 217, 466, 511, 700, 742, 937, 1481, 1952, 1981
NlaIV GGNNCC 4 cut(s) 702, 861, 1134, 1562
NmeAIII GCCGAG 1 cut(s) 1423
NmuCI GTSAC 4 cut(s) 818, 1154, 2014, 2084
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 3 cut(s) 22, 1122, 1580
PaeR7I CTCGAG 2 cut(s) 56, 62
PciI ACATGT 1 cut(s) 1576
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PctI GAATGC 1 cut(s) 268
PdmI GAANNNNTTC 2 cut(s) 1323, 1860
PflFI GACNNNGTC 1 cut(s) 125
PfoI TCCNGGA 1 cut(s) 669
PinAI ACCGGT 2 cut(s) 103, 1066
PleI GAGTC 3 cut(s) 688, 1767, 2110
PpsI GAGTC 3 cut(s) 688, 1767, 2110
PpuMI RGGWCCY 1 cut(s) 859
PscI ACATGT 1 cut(s) 1576
PsiI TTATAA 1 cut(s) 242
Psp124BI GAGCTC 2 cut(s) 63, 69
Psp5II RGGWCCY 1 cut(s) 859
Psp6I CCWGG 1 cut(s) 669
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 4 cut(s) 702, 861, 1134, 1562
PspPI GGNCC 2 cut(s) 859, 1757
PspPPI RGGWCCY 1 cut(s) 859
PspXI VCTCGAGB 2 cut(s) 56, 62
PsuI RGATCY 2 cut(s) 217, 700
PsyI GACNNNGTC 1 cut(s) 125
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 4 cut(s) 147, 415, 1556, 1891
RsaNI GTAC 4 cut(s) 146, 414, 1555, 1890
RseI CAYNNNNRTG 3 cut(s) 23, 1993, 1995
SacI GAGCTC 2 cut(s) 63, 69
SaqAI TTAA 4 cut(s) 86, 96, 759, 1536
Sau3AI GATC 9 cut(s) 217, 466, 511, 700, 742, 937, 1481, 1952, 1981
Sau96I GGNCC 2 cut(s) 859, 1757
SchI GAGTC 3 cut(s) 688, 1767, 2111
ScrFI CCNGG 1 cut(s) 671
SduI GDGCHC 6 cut(s) 63, 69, 77, 1135, 1211, 1404
SfaNI GCATC 6 cut(s) 316, 490, 538, 826, 873, 1292
SfcI CTRYAG 1 cut(s) 1590
Sfr274I CTCGAG 2 cut(s) 56, 62
SinI GGWCC 2 cut(s) 859, 1757
SlaI CTCGAG 2 cut(s) 56, 62
SmiMI CAYNNNNRTG 3 cut(s) 23, 1993, 1995
SmlI CTYRAG 4 cut(s) 56, 62, 68, 1740
SmoI CTYRAG 4 cut(s) 56, 62, 68, 1740
Sse9I AATT 6 cut(s) 8, 89, 290, 337, 1358, 1731
SsiI CCGC 8 cut(s) 5, 646, 715, 828, 1014, 1090, 1136, 1767
SspMI CTAG 7 cut(s) 210, 426, 627, 1017, 1056, 1299, 1871
SstI GAGCTC 2 cut(s) 63, 69
StyD4I CCNGG 1 cut(s) 669
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 1162
TaiI ACGT 1 cut(s) 129
TaqI TCGA 9 cut(s) 57, 63, 100, 223, 1125, 1264, 1531, 1722, 1961
TasI AATT 6 cut(s) 8, 89, 290, 337, 1358, 1731
TatI WGTACW 1 cut(s) 145
Tru1I TTAA 4 cut(s) 86, 96, 759, 1536
Tru9I TTAA 4 cut(s) 86, 96, 759, 1536
TscAI CASTG 5 cut(s) 412, 616, 754, 1039, 1167
TseFI GTSAC 4 cut(s) 818, 1154, 2014, 2084
Tsp45I GTSAC 4 cut(s) 818, 1154, 2014, 2084
TspRI CASTG 5 cut(s) 412, 616, 754, 1039, 1167
Tth111I GACNNNGTC 1 cut(s) 125
VneI GTGCAC 1 cut(s) 1207
VpaK11BI GGWCC 2 cut(s) 859, 1757
XapI RAATTY 2 cut(s) 8, 1358
XbaI TCTAGA 1 cut(s) 1298
XceI RCATGY 3 cut(s) 22, 1122, 1580
XhoI CTCGAG 2 cut(s) 56, 62
XmnI GAANNNNTTC 2 cut(s) 1323, 1860
XspI CTAG 7 cut(s) 210, 426, 627, 1017, 1056, 1299, 1871
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.