RH6CG311300

Protein BREAST CANCER SUSCEPTIBILITY 1 homolog

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0007909
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG311300.1

Sequence Viewer

Length: 2394 bp
ATGATTACATTAATCTCGTTAATTAAGCACCACCTCTCCGGCGGGAAATTCTCTCAAAACAAAAGAGGAAAAGGGCGCCACTCCACTCAAAAATTCCAGCACCCCGCTCTTTTCCCACTCGGGCAAAAACACTTCCGCCCTCCACGTGTCCCTCCCCACCTCCAAACCAATAGAAATCCGCCGCCTCATAAACACTCCACACTCTTCCACACCACCCCTTCACACGCTTCTCTCTCTCTCTCTGCACAGTTCCCAATGGCCCAGTCCTCCGCCAAGCACTCTTCAGATTCCGGAAACTGCCGCAACGGCGTCGTTTCGCCGATGAACAAGAACCCCCTCACGTTTCATCTCCAGAAGCTCGGCCTCGAGCTCACTTGCCCTCTCTGCCTAGGGTTTTTTAATCGGCCGACATTGCTTCCCTGCAATCACATCTTCTGCAACAACTGTGTGCCCAATGGGACCAATTTGGGAGCAGAGTGTCCTCTGTGTAATATCCAAGTTCCTGGTCAAGATCTGAGGCATGCGCCTTTCATGGAAAGCATAGTAGCAATCTACAAAAGCATGAAGGCCACTTACTGTACCAACTCCTCCCAGCCTATATATTCAGATGTTAGAACAGCTTCGGGTCAAAACCCGGTTTCACCTGATGTCAGTTTTGCTGGGAAATCGACTAAAGAACTGTTTGACAATTGCCAAGAGGGTAAATCAGAAAGTGCTCAGACCATTGTTTCATCAAGGGGTAATAAGCGAGTATGGGTTCCATGTAGTCAGAAACATTCTGTTACAGATGGAATTGGCAAGCATGGCAAAGTAGATAACTGTAGCATAGCAATAGATGGTAACAGCGAAGAATTCGAGTTGGGTAGAGGACGTAAATTTAATGGTGGATTAAATCCCAATTCACCATTACCAAGTTCTCAAATAAGATCTGTGGGACTGGACGAGTGTATGACTTCAGAAAGAGACATGAATCCAGTAGTGCAGGCGTTGCTGGATAGTCCTCCTTCATTTGGTGATGCCAAATGTTCAGATAATGATAATAGCTTTGACCAGTGCTCTGAGCAAATTTCAGACAGTTTGATCAGGGGGTCAATGAGGAAAATTGATGATAGAACAGGGCAGATGAGGCCTGATAGTTCTGCATCTGATACTGATGGCCATTTGAGGGAACTCAAGAGACAGAAGAAACTGGACTATGGGCCAGTCTCAGGGACTAATTCTGAGCTGGAACTTAAATTCAGAACACCTTCTAATGAGTCTTTCACAAATAACACCATTTGTGCATTTTGCCAGTCTTCCACAATCTCAGAGGTCACTGGGCCAATGTTGCACTATTCCAAGGGAAAATTGGTGGAGGGAGATGATGCAGCTGTTTCAGATGTCATACATGTTCACAAAATATGCATTGATTGGGCACCACAAGTGTTCTTTAAAGATGAAACCATTAAAAATTTGAAGGCGGAAGTGACAAGGGGTGCAAGATTAAAATGCACCAAATGTGGGATAAAGGGAGCAGCCTTGGGATGCTTTGTGAAATCCTGCCGAAGAAGCTATCATGTTACCTGTGCAATTGAAATTTCCAAGTGCCGTTGGGATTATGAAAGCTTTCTTCTGCTGTGTCCAGCACATTGTTCAGTTAAATTTCCCAATGAGAAGTTGAATCGTAACAAGCACAAAAATTGTCAGCTCTCCGACAGTAGAGTCGCTTCAAATGGAGTGAACAACTGGGTTTTATGCCCTTCTGGTTTGTCTTCTGAAGAGAAGATTTTTCTTATCAAATTTGCTGAGATGAATGGTGCAACTTTGTCCAAGAGCTGGACACCTGATGTTACACATGTGATTGCTGCCCTGGATGGGGATGGTGCATATGTCCGGACGTTTAAAATTTTCATGGCCATTTTGGCAGGAAAATGGATAGTGACAATTGACTGGGTAAAAGCATGTGTGGAAACTAAGCATCATGTGGATGAAGAACCTTATGAAGTTAGTCTTGATAACTATGGTTGTCGCAGTGGTGCCAAAGCTGGCAGGCTTAGGGCATTAAGCAATGATGCGAAGCTCTTTAATGGTTTGAATTTCTATTTTGCTGGTGATTTTATACTGGAACGGAAGGAAGACTACAAAGAATTGGTCATAGCTGCAGGAGGTACTGTTTTCAACAGTAAGGAAGATGTGCTTGAAGCAAGTTGTCATGAAAAGGGCACTTCGAGGACACTAGTTGTGTACAACCTTGACCCCCCACCAGGGTGCAAGTTGGGGGAAGAAGTTTCAATACTTTGGCAAAGGTCTAACGAGGCACAAGATATAGCTGCGAAAATTGGAGCTGAATACGTCTTTCACACATGGTTGTTGGAGTCAATTGCGAGATATGAGTTGCAGCCAATTGTATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000152 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009934 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010212 GO:0010332 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010565 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0010639 GO:0016020 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019827 GO:0022603 GO:0022607 GO:0022622 GO:0031056 GO:0031057 GO:0031058 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031401 GO:0031436 GO:0032259 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034622 GO:0034641 GO:0034968 GO:0035065 GO:0035066 GO:0035067 GO:0036211 GO:0042127 GO:0042304 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045717 GO:0045787 GO:0045833 GO:0045892 GO:0045893 GO:0045922 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046890 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051055 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051716 GO:0051726 GO:0060255 GO:0062012 GO:0062014 GO:0065003 GO:0065004 GO:0065007 GO:0070531 GO:0070647 GO:0071156 GO:0071158 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0080090 GO:0080182 GO:0090068 GO:0090304 GO:0097159 GO:0098727 GO:0099402 GO:0104004 GO:0140096 GO:1901360 GO:1901363 GO:1901564 GO:1901983 GO:1901984 GO:1901985 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1905269 GO:1905392 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2000758 GO:2001141 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03440 ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map03440 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169
Pfam Domains
Protein Families
BRCT BRCT_2 zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-HC5HC2H zf-RING_UBOX

Protein Analysis

797

Amino Acids

87.99

Weight (kDa)

8.45

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_2 PF13923 126 - 163 1.5e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 126 - 163 1.7e-06 Zinc finger, C3HC4 type (RING finger)
zf-HC5HC2H_2 PF13832 458 - 525 2.2e-07 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 465 - 543 2.5e-09 PHD-like zinc-binding domain
BRCT PF00533 579 - 649 1.9e-10 BRCA1 C Terminus (BRCT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1700
AccB1I GGYRCC 3 cut(s) 75, 1414, 2015
AccB7I CCANNNNNTGG 1 cut(s) 1815
AccBSI CCGCTC 1 cut(s) 107
AccIII TCCGGA 2 cut(s) 290, 1872
AciI CCGC 8 cut(s) 42, 105, 136, 179, 182, 270, 301, 1460
AcoI YGGCCR 3 cut(s) 404, 1156, 1893
AcuI CTGAAG 3 cut(s) 267, 939, 1776
AcvI CACGTG 1 cut(s) 146
AcyI GRCGYC 2 cut(s) 76, 309
AfaI GTAC 3 cut(s) 580, 2149, 2225
AfiI CCNNNNNNNGG 9 cut(s) 1010, 1165, 1208, 1500, 1815, 1854, 1855, 2243, 2244
AflIII ACRYGT 3 cut(s) 145, 1387, 1834
AgsI TTSAA 8 cut(s) 1456, 1574, 1660, 1710, 2074, 2158, 2180, 2271
AhlI ACTAGT 1 cut(s) 2215
AjnI CCWGG 3 cut(s) 502, 1848, 2242
AleI CACNNNNGTG 1 cut(s) 2245
Alw21I GWGCWC 3 cut(s) 372, 718, 1058
Alw26I GTCTC 3 cut(s) 957, 1171, 1210
Ama87I CYCGRG 2 cut(s) 119, 365
Aor13HI TCCGGA 2 cut(s) 290, 1872
AoxI GGCC 9 cut(s) 258, 361, 404, 567, 1127, 1156, 1199, 1319, 1893
ApeKI GCWGC 6 cut(s) 1367, 1514, 1844, 2138, 2309, 2377
ArsI GACNNNNNNTTYG 2 cut(s) 2115, 2147
AseI ATTAAT 1 cut(s) 11
Asp700I GAANNNNTTC 3 cut(s) 619, 1246, 1605
AspA2I CCTAGG 1 cut(s) 388
AspLEI GCGC 2 cut(s) 78, 526
AspS9I GGNCC 4 cut(s) 259, 459, 1199, 1319
AsuC2I CCSGG 1 cut(s) 635
AsuHPI GGTGA 4 cut(s) 633, 894, 1025, 2102
AvaI CYCGRG 2 cut(s) 119, 365
AvaII GGWCC 1 cut(s) 459
AvrII CCTAGG 1 cut(s) 388
BaeGI GKGCMC 3 cut(s) 453, 1417, 2204
BalI TGGCCA 2 cut(s) 1158, 1895
BanI GGYRCC 3 cut(s) 75, 1414, 2015
BanII GRGCYC 1 cut(s) 372
BarI GAAGNNNNNNTAC 8 cut(s) 557, 589, 1690, 1722, 2102, 2134, 2256, 2288
BbrPI CACGTG 1 cut(s) 146
BbsI GAAGAC 3 cut(s) 1287, 1743, 2121
Bbv12I GWGCWC 3 cut(s) 372, 718, 1058
BbvI GCAGC 6 cut(s) 1379, 1526, 1831, 2125, 2296, 2389
BccI CCATC 5 cut(s) 782, 830, 1148, 1847, 1853
BceAI ACGGC 2 cut(s) 322, 1572
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BciT130I CCWGG 3 cut(s) 504, 1850, 2244
BclI TGATCA 1 cut(s) 1080
BcnI CCSGG 1 cut(s) 635
BcoDI GTCTC 3 cut(s) 957, 1171, 1210
BcuI ACTAGT 1 cut(s) 2215
BfaI CTAG 2 cut(s) 389, 2216
BfmI CTRYAG 2 cut(s) 820, 2139
BfoI RGCGCY 1 cut(s) 79
BglI GCCNNNNNGGC 2 cut(s) 306, 1901
BglII AGATCT 2 cut(s) 511, 926
BisI GCNGC 8 cut(s) 182, 301, 1368, 1515, 1845, 2139, 2310, 2378
BlnI CCTAGG 1 cut(s) 388
BlsI GCNGC 8 cut(s) 183, 302, 1369, 1516, 1846, 2140, 2311, 2379
Bme1390I CCNGG 4 cut(s) 504, 635, 1850, 2244
Bme18I GGWCC 1 cut(s) 459
BmeT110I CYCGRG 2 cut(s) 119, 365
BmgT120I GGNCC 4 cut(s) 259, 459, 1199, 1319
BmiI GGNNCC 5 cut(s) 77, 460, 759, 1416, 2017
BmrFI CCNGG 4 cut(s) 504, 635, 1850, 2244
BmrI ACTGGG 4 cut(s) 256, 1326, 1735, 1939
BmsI GCATC 6 cut(s) 1006, 1151, 1354, 1514, 1966, 2041
BmuI ACTGGG 4 cut(s) 256, 1326, 1735, 1939
BpiI GAAGAC 3 cut(s) 1287, 1743, 2121
BpmI CTGGAG 1 cut(s) 335
Bpu10I CCTNAGC 1 cut(s) 2033
BpuEI CTTGAG 1 cut(s) 1157
BpuMI CCSGG 1 cut(s) 635
BsaAI YACGTR 1 cut(s) 146
BsaHI GRCGYC 2 cut(s) 76, 309
BsaJI CCNNGG 5 cut(s) 388, 1338, 1518, 1848, 2243
BsaWI WCCGGW 2 cut(s) 290, 1872
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 2136, 2166
Bsc4I CCNNNNNNNGG 9 cut(s) 1010, 1165, 1208, 1500, 1815, 1854, 1855, 2243, 2244
Bse3DI GCAATG 2 cut(s) 410, 2053
BseAI TCCGGA 2 cut(s) 290, 1872
BseBI CCWGG 3 cut(s) 504, 1850, 2244
BseDI CCNNGG 5 cut(s) 388, 1338, 1518, 1848, 2243
BseGI GGATG 4 cut(s) 1529, 1858, 1864, 1972
BseLI CCNNNNNNNGG 9 cut(s) 1010, 1165, 1208, 1500, 1815, 1854, 1855, 2243, 2244
BseMI GCAATG 2 cut(s) 410, 2053
BseMII CTCAG 7 cut(s) 506, 731, 1050, 1212, 1221, 1320, 1776
BseRI GAGGAG 1 cut(s) 577
BseSI GKGCMC 3 cut(s) 453, 1417, 2204
BseX3I CGGCCG 1 cut(s) 404
BseXI GCAGC 6 cut(s) 1379, 1526, 1831, 2125, 2296, 2389
BseYI CCCAGC 2 cut(s) 591, 659
BsgI GTGCAG 2 cut(s) 228, 1001
Bsh1285I CGRYCG 1 cut(s) 407
BshFI GGCC 9 cut(s) 260, 363, 406, 569, 1129, 1158, 1201, 1321, 1895
BshNI GGYRCC 3 cut(s) 75, 1414, 2015
BsiEI CGRYCG 1 cut(s) 407
BsiHKAI GWGCWC 3 cut(s) 372, 718, 1058
BsiHKCI CYCGRG 2 cut(s) 119, 365
BsiSI CCGG 4 cut(s) 39, 291, 635, 1873
BslFI GGGAC 4 cut(s) 134, 472, 948, 1225
BslI CCNNNNNNNGG 9 cut(s) 1010, 1165, 1208, 1500, 1815, 1854, 1855, 2243, 2244
BsmAI GTCTC 3 cut(s) 957, 1171, 1210
BsmFI GGGAC 4 cut(s) 134, 472, 948, 1225
BsnI GGCC 9 cut(s) 260, 363, 406, 569, 1129, 1158, 1201, 1321, 1895
BsoBI CYCGRG 2 cut(s) 119, 365
Bsp1286I GDGCHC 6 cut(s) 372, 453, 718, 1058, 1417, 2204
Bsp13I TCCGGA 2 cut(s) 290, 1872
Bsp1407I TGTACA 1 cut(s) 2223
Bsp143I GATC 3 cut(s) 511, 926, 1080
BspACI CCGC 8 cut(s) 42, 105, 136, 179, 182, 270, 301, 1460
BspANI GGCC 9 cut(s) 260, 363, 406, 569, 1129, 1158, 1201, 1321, 1895
BspCNI CTCAG 7 cut(s) 507, 730, 1051, 1213, 1220, 1319, 1777
BspEI TCCGGA 2 cut(s) 290, 1872
BspHI TCATGA 1 cut(s) 2191
BspLI GGNNCC 5 cut(s) 77, 460, 759, 1416, 2017
BspMAI CTGCAG 1 cut(s) 2143
BspT107I GGYRCC 3 cut(s) 75, 1414, 2015
BsrBI CCGCTC 1 cut(s) 107
BsrDI GCAATG 2 cut(s) 410, 2053
BsrGI TGTACA 1 cut(s) 2223
BssECI CCNNGG 5 cut(s) 388, 1338, 1518, 1848, 2243
BssMI GATC 3 cut(s) 511, 926, 1080
BssNI GRCGYC 2 cut(s) 76, 309
BssT1I CCWWGG 3 cut(s) 388, 1338, 1518
Bst2UI CCWGG 3 cut(s) 504, 1850, 2244
Bst4CI ACNGT 9 cut(s) 249, 446, 578, 681, 821, 1076, 1697, 2152, 2162
Bst6I CTCTTC 3 cut(s) 209, 286, 1752
BstACI GRCGYC 2 cut(s) 76, 309
BstAPI GCANNNNNTGC 1 cut(s) 988
BstAUI TGTACA 1 cut(s) 2223
BstBAI YACGTR 1 cut(s) 146
BstC8I GCNNGC 5 cut(s) 522, 800, 984, 2026, 2030
BstDEI CTNAG 9 cut(s) 515, 717, 1059, 1207, 1221, 1306, 1785, 1953, 2033
BstF5I GGATG 4 cut(s) 1529, 1858, 1864, 1972
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 2 cut(s) 78, 526
BstKTI GATC 3 cut(s) 514, 929, 1083
BstMAI GTCTC 3 cut(s) 957, 1171, 1210
BstMBI GATC 3 cut(s) 511, 926, 1080
BstMCI CGRYCG 1 cut(s) 407
BstMWI GCNNNNNNNGC 9 cut(s) 306, 384, 412, 804, 988, 1126, 1327, 1548, 1901
BstNI CCWGG 3 cut(s) 504, 1850, 2244
BstNSI RCATGY 4 cut(s) 524, 1391, 1838, 1944
BstSCI CCNGG 4 cut(s) 502, 633, 1848, 2242
BstSFI CTRYAG 2 cut(s) 820, 2139
BstSLI GKGCMC 3 cut(s) 453, 1417, 2204
BstV1I GCAGC 6 cut(s) 1379, 1526, 1831, 2125, 2296, 2389
BstV2I GAAGAC 3 cut(s) 1287, 1743, 2121
BstX2I RGATCY 2 cut(s) 511, 926
BstXI CCANNNNNNTGG 1 cut(s) 503
BstYI RGATCY 2 cut(s) 511, 926
BstZI CGGCCG 1 cut(s) 404
BsuRI GGCC 9 cut(s) 260, 363, 406, 569, 1129, 1158, 1201, 1321, 1895
BtsCI GGATG 4 cut(s) 1529, 1858, 1864, 1972
BtsI GCAGTG 1 cut(s) 2017
BtsIMutI CAGTG 3 cut(s) 1058, 1314, 2017
Cac8I GCNNGC 5 cut(s) 522, 800, 984, 2026, 2030
CciI TCATGA 1 cut(s) 2191
CfoI GCGC 2 cut(s) 78, 526
Cfr13I GGNCC 4 cut(s) 259, 459, 1199, 1319
CseI GACGC 1 cut(s) 298
Csp6I GTAC 3 cut(s) 579, 2148, 2224
CviQI GTAC 3 cut(s) 579, 2148, 2224
DdeI CTNAG 9 cut(s) 515, 717, 1059, 1207, 1221, 1306, 1785, 1953, 2033
DinI GGCGCC 1 cut(s) 77
DpnI GATC 3 cut(s) 513, 928, 1082
DpnII GATC 3 cut(s) 511, 926, 1080
DraI TTTAAA 2 cut(s) 1432, 1882
DrdI GACNNNNNNGTC 1 cut(s) 1700
DseDI GACNNNNNNGTC 1 cut(s) 1700
EaeI YGGCCR 3 cut(s) 404, 1156, 1893
EagI CGGCCG 1 cut(s) 404
Eam1104I CTCTTC 3 cut(s) 209, 286, 1752
EarI CTCTTC 3 cut(s) 209, 286, 1752
EciI GGCGGA 4 cut(s) 125, 168, 259, 1475
Ecl136II GAGCTC 1 cut(s) 370
EclXI CGGCCG 1 cut(s) 404
Eco130I CCWWGG 3 cut(s) 388, 1338, 1518
Eco147I AGGCCT 1 cut(s) 1129
Eco24I GRGCYC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 459
Eco52I CGGCCG 1 cut(s) 404
Eco53kI GAGCTC 1 cut(s) 370
Eco57I CTGAAG 3 cut(s) 267, 939, 1776
Eco72I CACGTG 1 cut(s) 146
Eco88I CYCGRG 2 cut(s) 119, 365
EcoICRI GAGCTC 1 cut(s) 370
EcoRI GAATTC 1 cut(s) 851
EcoRII CCWGG 3 cut(s) 502, 1848, 2242
EcoT14I CCWWGG 3 cut(s) 388, 1338, 1518
EcoT22I ATGCAT 1 cut(s) 1406
EcoT38I GRGCYC 1 cut(s) 372
EgeI GGCGCC 1 cut(s) 77
EheI GGCGCC 1 cut(s) 77
ErhI CCWWGG 3 cut(s) 388, 1338, 1518
FalI AAGNNNNNCTT 4 cut(s) 1974, 2006, 2160, 2192
FaqI GGGAC 4 cut(s) 134, 472, 948, 1225
FauI CCCGC 2 cut(s) 35, 112
FauNDI CATATG 1 cut(s) 1867
FbaI TGATCA 1 cut(s) 1080
Fnu4HI GCNGC 8 cut(s) 182, 301, 1368, 1515, 1845, 2139, 2310, 2378
FokI GGATG 4 cut(s) 1536, 1865, 1871, 1979
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 8 cut(s) 182, 301, 1368, 1515, 1845, 2139, 2310, 2378
FspBI CTAG 2 cut(s) 389, 2216
GlaI GCGC 2 cut(s) 77, 525
GluI GCNGC 8 cut(s) 182, 301, 1368, 1515, 1845, 2139, 2310, 2378
GsaI CCCAGC 2 cut(s) 595, 663
GsuI CTGGAG 1 cut(s) 335
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 9 cut(s) 260, 363, 406, 569, 1129, 1158, 1201, 1321, 1895
HapII CCGG 4 cut(s) 39, 291, 635, 1873
HgaI GACGC 1 cut(s) 298
HhaI GCGC 2 cut(s) 78, 526
Hin1I GRCGYC 2 cut(s) 76, 309
Hin6I GCGC 2 cut(s) 76, 524
HinP1I GCGC 2 cut(s) 76, 524
HindIII AAGCTT 1 cut(s) 1603
HinfI GANTC 6 cut(s) 287, 970, 1256, 1660, 1701, 2354
HpaII CCGG 4 cut(s) 39, 291, 635, 1873
HphI GGTGA 4 cut(s) 633, 894, 1025, 2102
Hpy166II GTNNAC 3 cut(s) 1393, 1720, 2224
Hpy188III TCNNGA 7 cut(s) 291, 352, 509, 1174, 1873, 1991, 2192
Hpy8I GTNNAC 3 cut(s) 1393, 1720, 2224
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 7 cut(s) 228, 559, 1014, 1257, 1450, 1749, 2104
HpyCH4III ACNGT 9 cut(s) 249, 446, 578, 681, 821, 1076, 1697, 2152, 2162
HpyCH4IV ACGT 5 cut(s) 145, 341, 871, 1877, 2331
HpyF10VI GCNNNNNNNGC 9 cut(s) 306, 384, 412, 804, 988, 1126, 1327, 1548, 1901
HpyF3I CTNAG 9 cut(s) 515, 717, 1059, 1207, 1221, 1306, 1785, 1953, 2033
HpySE526I ACGT 5 cut(s) 145, 341, 871, 1877, 2331
Hsp92I GRCGYC 2 cut(s) 76, 309
HspAI GCGC 2 cut(s) 76, 524
KasI GGCGCC 1 cut(s) 75
Kpn2I TCCGGA 2 cut(s) 290, 1872
Ksp22I TGATCA 1 cut(s) 1080
Kzo9I GATC 3 cut(s) 511, 926, 1080
LmnI GCTCC 3 cut(s) 470, 1511, 2321
Lsp1109I GCAGC 6 cut(s) 1379, 1526, 1831, 2125, 2296, 2389
LweI GCATC 6 cut(s) 1006, 1151, 1354, 1514, 1966, 2041
MaeI CTAG 2 cut(s) 389, 2216
MaeII ACGT 5 cut(s) 145, 341, 871, 1877, 2331
MaeIII GTNAC 8 cut(s) 781, 839, 1312, 1465, 1558, 1664, 1828, 1918
MalI GATC 3 cut(s) 513, 928, 1082
MbiI CCGCTC 1 cut(s) 107
MboI GATC 3 cut(s) 511, 926, 1080
MfeI CAATTG 5 cut(s) 688, 1569, 1923, 2358, 2382
MflI RGATCY 2 cut(s) 511, 926
MhlI GDGCHC 6 cut(s) 372, 453, 718, 1058, 1417, 2204
MlsI TGGCCA 2 cut(s) 1158, 1895
MluNI TGGCCA 2 cut(s) 1158, 1895
Mly113I GGCGCC 1 cut(s) 76
MlyI GAGTC 3 cut(s) 1265, 1710, 2363
MmeI TCCRAC 2 cut(s) 1716, 2331
Mox20I TGGCCA 2 cut(s) 1158, 1895
Mph1103I ATGCAT 1 cut(s) 1406
MroI TCCGGA 2 cut(s) 290, 1872
MroXI GAANNNNTTC 3 cut(s) 619, 1246, 1605
MscI TGGCCA 2 cut(s) 1158, 1895
MslI CAYNNNNRTG 2 cut(s) 1965, 2245
Msp20I TGGCCA 2 cut(s) 1158, 1895
MspA1I CMGCKG 1 cut(s) 1370
MspI CCGG 4 cut(s) 39, 291, 635, 1873
MspR9I CCNGG 4 cut(s) 504, 635, 1850, 2244
MunI CAATTG 5 cut(s) 688, 1569, 1923, 2358, 2382
MvaI CCWGG 3 cut(s) 504, 1850, 2244
MwoI GCNNNNNNNGC 9 cut(s) 306, 384, 412, 804, 988, 1126, 1327, 1548, 1901
NarI GGCGCC 1 cut(s) 76
NciI CCSGG 1 cut(s) 635
NdeI CATATG 1 cut(s) 1867
NdeII GATC 3 cut(s) 511, 926, 1080
NlaIV GGNNCC 5 cut(s) 77, 460, 759, 1416, 2017
NmeAIII GCCGAG 1 cut(s) 339
NmuCI GTSAC 3 cut(s) 1312, 1465, 1918
NsiI ATGCAT 1 cut(s) 1406
NspI RCATGY 4 cut(s) 524, 1391, 1838, 1944
OliI CACNNNNGTG 1 cut(s) 2245
PacI TTAATTAA 1 cut(s) 24
PaeI GCATGC 1 cut(s) 524
PaeR7I CTCGAG 1 cut(s) 365
PagI TCATGA 1 cut(s) 2191
PceI AGGCCT 1 cut(s) 1129
PciI ACATGT 2 cut(s) 1387, 1834
PdmI GAANNNNTTC 3 cut(s) 619, 1246, 1605
PfeI GAWTC 3 cut(s) 287, 970, 1660
PflMI CCANNNNNTGG 1 cut(s) 1815
PkrI GCNGC 8 cut(s) 183, 302, 1369, 1516, 1846, 2140, 2311, 2379
PleI GAGTC 3 cut(s) 1264, 1709, 2362
PluTI GGCGCC 1 cut(s) 79
PmaCI CACGTG 1 cut(s) 146
PmlI CACGTG 1 cut(s) 146
PpsI GAGTC 3 cut(s) 1264, 1709, 2362
Ppu21I YACGTR 1 cut(s) 146
PscI ACATGT 2 cut(s) 1387, 1834
PshBI ATTAAT 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 372
Psp6I CCWGG 3 cut(s) 502, 1848, 2242
PspCI CACGTG 1 cut(s) 146
PspFI CCCAGC 2 cut(s) 591, 659
PspGI CCWGG 3 cut(s) 502, 1848, 2242
PspN4I GGNNCC 5 cut(s) 77, 460, 759, 1416, 2017
PspPI GGNCC 4 cut(s) 259, 459, 1199, 1319
PspXI VCTCGAGB 1 cut(s) 365
PstI CTGCAG 1 cut(s) 2143
PsuI RGATCY 2 cut(s) 511, 926
PvuII CAGCTG 1 cut(s) 1370
RsaI GTAC 3 cut(s) 580, 2149, 2225
RsaNI GTAC 3 cut(s) 579, 2148, 2224
RseI CAYNNNNRTG 2 cut(s) 1965, 2245
SacI GAGCTC 1 cut(s) 372
SatI GCNGC 8 cut(s) 182, 301, 1368, 1515, 1845, 2139, 2310, 2378
Sau3AI GATC 3 cut(s) 511, 926, 1080
Sau96I GGNCC 4 cut(s) 259, 459, 1199, 1319
SchI GAGTC 3 cut(s) 1265, 1710, 2363
ScrFI CCNGG 4 cut(s) 504, 635, 1850, 2244
SduI GDGCHC 6 cut(s) 372, 453, 718, 1058, 1417, 2204
SfaNI GCATC 6 cut(s) 1006, 1151, 1354, 1514, 1966, 2041
SfcI CTRYAG 2 cut(s) 820, 2139
SfoI GGCGCC 1 cut(s) 77
Sfr274I CTCGAG 1 cut(s) 365
SinI GGWCC 1 cut(s) 459
SlaI CTCGAG 1 cut(s) 365
SmiMI CAYNNNNRTG 2 cut(s) 1965, 2245
SmlI CTYRAG 2 cut(s) 365, 1172
SmoI CTYRAG 2 cut(s) 365, 1172
SpeI ACTAGT 1 cut(s) 2215
SphI GCATGC 1 cut(s) 524
SseBI AGGCCT 1 cut(s) 1129
SsiI CCGC 8 cut(s) 42, 105, 136, 179, 182, 270, 301, 1460
SspDI GGCGCC 1 cut(s) 75
SspMI CTAG 2 cut(s) 389, 2216
SstI GAGCTC 1 cut(s) 372
StuI AGGCCT 1 cut(s) 1129
StyD4I CCNGG 4 cut(s) 502, 633, 1848, 2242
StyI CCWWGG 3 cut(s) 388, 1338, 1518
TaaI ACNGT 9 cut(s) 249, 446, 578, 681, 821, 1076, 1697, 2152, 2162
TaiI ACGT 5 cut(s) 148, 344, 874, 1880, 2334
TaqI TCGA 4 cut(s) 366, 668, 855, 2207
TatI WGTACW 1 cut(s) 2223
TauI GCSGC 2 cut(s) 184, 303
TfiI GAWTC 3 cut(s) 287, 970, 1660
TscAI CASTG 3 cut(s) 1058, 1321, 2017
TseFI GTSAC 3 cut(s) 1312, 1465, 1918
TseI GCWGC 6 cut(s) 1367, 1514, 1844, 2138, 2309, 2377
Tsp45I GTSAC 3 cut(s) 1312, 1465, 1918
TspGWI ACGGA 1 cut(s) 2122
TspRI CASTG 3 cut(s) 1058, 1321, 2017
Van91I CCANNNNNTGG 1 cut(s) 1815
VpaK11BI GGWCC 1 cut(s) 459
VspI ATTAAT 1 cut(s) 11
XceI RCATGY 4 cut(s) 524, 1391, 1838, 1944
XcmI CCANNNNNNNNNTGG 1 cut(s) 1345
XhoI CTCGAG 1 cut(s) 365
XmaJI CCTAGG 1 cut(s) 388
XmnI GAANNNNTTC 3 cut(s) 619, 1246, 1605
XspI CTAG 2 cut(s) 389, 2216
Zsp2I ATGCAT 1 cut(s) 1406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.