pycom05g17890

Protein BREAST CANCER SUSCEPTIBILITY 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0007909
Physical Location & Seq
Reverse (-)
21014082 .. 21016811
2730 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g17890.3

Sequence Viewer

Length: 1068 bp
ATGAAGCTTCATATTGAAGAGAGAAAGGCCTTGATATCTTCGACAACCTGGCCAACCAAGGACAGGTTGGTGGAAGGGAGAGAAGACATCAACAAAGTGACCGCATTTTGCAGCCAAGAAACAGCCCATTTCATCACGCACAATTCCCCCGAAGCCACCCAGATCCTTGGCCATAATCCAAGCTCCGTCGATATTCATTTTCAAATGATTCGGCAAGGTGAAGGTTTTGCTTCTGGAAGAATCAATCTCGGAGAAATAGAGGTTTCCAAGGCAGAGTTTTCTGAAACAGCTGATGTTGGGGAGAGTGTCAAGTTGCCGGGTCTTCAAGATTTACTTGGTTACACGTTAGTATGGAGTCCTGATGACGGGAATGGGGACAATTATGGTGCATATGGTTGTCTTGGGATAATCGTTGAATCTTTCTCCAACGATATTGATCCCTTCTTTGCTTGGCTTTCATTGACCTGTCCGCAAAGGCTCATCTCAAGATGGAAAACATTTACGAGAACATTGTTGAGATGTTCTACTCTTCTTTTAAACAAGTTTGCTGAGAAGACCGGTGCAACTGTATCAAAGACCTGGAGACTAGATGTTACTCATGTGATTGCAGCCCTGGATGGAGACGATGCATATGCCAGGACATTCAAAACTTGCATGGCCATTTTTGCTGGAAGATGGATTCTGAAAATTGACTCATGCATGGAAGCCACAGGCCATGTGAATGAAGAACCATACGAAGCTGGTCTTGATAACTATGGATGCTGCGATGTCCCAAAATCTGGCAGGCTTCAGGCAACAAACAACGATCCAAAGCTCATTAATGGTTTGAATTTCTATTTTGCTGGTGATTTTGTACTTGATAGAAAGGAAGATCTTCAAGATTTGAGCATTGCAGCAGGAGGCACTGTTTCAACAACTCAGAAGGAAGTGGTGGAACGAAGTTGTCTTGAACAGACAGCTTCAAGGACGCTAGTTGTATACAACCTCGATCAACCAGAAGGATGCAAGTTGGGGCCGGGGAAGAAGTTTCAATCCTTTGGCAACGGTCCAATGAGGCTCAGGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000152 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009934 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010212 GO:0010332 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010565 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0010639 GO:0016020 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019827 GO:0022603 GO:0022607 GO:0022622 GO:0031056 GO:0031057 GO:0031058 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031401 GO:0031436 GO:0032259 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034622 GO:0034641 GO:0034968 GO:0035065 GO:0035066 GO:0035067 GO:0036211 GO:0042127 GO:0042304 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045717 GO:0045787 GO:0045833 GO:0045892 GO:0045893 GO:0045922 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046890 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051055 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051716 GO:0051726 GO:0060255 GO:0062012 GO:0062014 GO:0065003 GO:0065004 GO:0065007 GO:0070531 GO:0070647 GO:0071156 GO:0071158 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0080090 GO:0080182 GO:0090068 GO:0090304 GO:0097159 GO:0098727 GO:0099402 GO:0104004 GO:0140096 GO:1901360 GO:1901363 GO:1901564 GO:1901983 GO:1901984 GO:1901985 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1905269 GO:1905392 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2000758 GO:2001141 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03440 ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map03440 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169
Pfam Domains
Protein Families
BRCT BRCT_2 zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-HC5HC2H zf-RING_UBOX

Protein Analysis

356

Amino Acids

39.31

Weight (kDa)

5.38

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 779
AccI GTMKAC 1 cut(s) 978
AciI CCGC 2 cut(s) 102, 470
AclWI GGATC 3 cut(s) 157, 431, 800
AcoI YGGCCR 3 cut(s) 50, 169, 657
AcsI RAATTY 1 cut(s) 829
AcuI CTGAAG 1 cut(s) 773
AfaI GTAC 1 cut(s) 855
AfiI CCNNNNNNNGG 3 cut(s) 63, 365, 779
AflIII ACRYGT 1 cut(s) 342
AgeI ACCGGT 1 cut(s) 557
AjnI CCWGG 4 cut(s) 47, 578, 612, 635
AluBI AGCT 6 cut(s) 7, 183, 290, 740, 814, 959
AluI AGCT 6 cut(s) 7, 183, 290, 740, 814, 959
Alw26I GTCTC 2 cut(s) 577, 615
AlwI GGATC 3 cut(s) 157, 431, 800
AoxI GGCC 6 cut(s) 27, 50, 169, 657, 712, 1013
ApeKI GCWGC 4 cut(s) 111, 608, 762, 893
ApoI RAATTY 1 cut(s) 829
AseI ATTAAT 1 cut(s) 819
AsiGI ACCGGT 1 cut(s) 557
Asp700I GAANNNNTTC 1 cut(s) 873
AspS9I GGNCC 2 cut(s) 1013, 1046
AsuC2I CCSGG 2 cut(s) 318, 1017
AsuHPI GGTGA 2 cut(s) 230, 857
AvaII GGWCC 1 cut(s) 1046
BalI TGGCCA 3 cut(s) 52, 171, 659
BbsI GAAGAC 3 cut(s) 90, 314, 560
BbvI GCAGC 4 cut(s) 123, 620, 749, 905
BccI CCATC 3 cut(s) 483, 611, 669
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BciT130I CCWGG 4 cut(s) 49, 580, 614, 637
BcnI CCSGG 2 cut(s) 318, 1017
BcoDI GTCTC 2 cut(s) 577, 615
BfaI CTAG 2 cut(s) 587, 971
BglII AGATCT 1 cut(s) 871
BisI GCNGC 4 cut(s) 112, 609, 763, 894
BlsI GCNGC 4 cut(s) 113, 610, 764, 895
Bme1390I CCNGG 6 cut(s) 49, 318, 580, 614, 637, 1017
Bme18I GGWCC 1 cut(s) 1046
BmgT120I GGNCC 2 cut(s) 1013, 1046
BmiI GGNNCC 1 cut(s) 1014
BmrFI CCNGG 6 cut(s) 49, 318, 580, 614, 637, 1017
BmsI GCATC 3 cut(s) 616, 749, 992
BpiI GAAGAC 3 cut(s) 90, 314, 560
BpmI CTGGAG 1 cut(s) 601
Bpu10I CCTNAGC 1 cut(s) 1058
BpuEI CTTGAG 1 cut(s) 469
BpuMI CCSGG 2 cut(s) 318, 1017
BsaBI GATNNNNATC 1 cut(s) 435
BsaJI CCNNGG 5 cut(s) 57, 166, 267, 612, 1016
BsaWI WCCGGW 1 cut(s) 557
BsaXI ACNNNNNCTCC 2 cut(s) 891, 921
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 365, 779
Bse118I RCCGGY 1 cut(s) 557
Bse3DI GCAATG 1 cut(s) 888
Bse8I GATNNNNATC 1 cut(s) 435
BseBI CCWGG 4 cut(s) 49, 580, 614, 637
BseDI CCNNGG 5 cut(s) 57, 166, 267, 612, 1016
BseGI GGATG 3 cut(s) 622, 764, 1007
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 3 cut(s) 63, 365, 779
BseMI GCAATG 1 cut(s) 888
BseMII CTCAG 2 cut(s) 540, 932
BseXI GCAGC 4 cut(s) 123, 620, 749, 905
BshFI GGCC 6 cut(s) 29, 52, 171, 659, 714, 1015
BshTI ACCGGT 1 cut(s) 557
BsiSI CCGG 3 cut(s) 317, 558, 1016
BslFI GGGAC 2 cut(s) 389, 755
BslI CCNNNNNNNGG 3 cut(s) 63, 365, 779
BsmAI GTCTC 2 cut(s) 577, 615
BsmBI CGTCTC 1 cut(s) 615
BsmFI GGGAC 2 cut(s) 389, 755
BsnI GGCC 6 cut(s) 29, 52, 171, 659, 714, 1015
Bsp143I GATC 5 cut(s) 162, 436, 805, 871, 988
BspACI CCGC 2 cut(s) 102, 470
BspANI GGCC 6 cut(s) 29, 52, 171, 659, 714, 1015
BspCNI CTCAG 2 cut(s) 541, 931
BspLI GGNNCC 1 cut(s) 1014
BspPI GGATC 3 cut(s) 157, 431, 800
BsrDI GCAATG 1 cut(s) 888
BsrFI RCCGGY 1 cut(s) 557
BssAI RCCGGY 1 cut(s) 557
BssECI CCNNGG 5 cut(s) 57, 166, 267, 612, 1016
BssMI GATC 5 cut(s) 162, 436, 805, 871, 988
BssNAI GTATAC 1 cut(s) 979
BssT1I CCWWGG 3 cut(s) 57, 166, 267
Bst1107I GTATAC 1 cut(s) 979
Bst2UI CCWGG 4 cut(s) 49, 580, 614, 637
Bst4CI ACNGT 3 cut(s) 568, 907, 1046
Bst6I CTCTTC 2 cut(s) 12, 534
BstC8I GCNNGC 1 cut(s) 785
BstDEI CTNAG 3 cut(s) 549, 918, 1058
BstF5I GGATG 3 cut(s) 622, 764, 1007
BstKTI GATC 5 cut(s) 165, 439, 808, 874, 991
BstMAI GTCTC 2 cut(s) 577, 615
BstMBI GATC 5 cut(s) 162, 436, 805, 871, 988
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstNI CCWGG 4 cut(s) 49, 580, 614, 637
BstSCI CCNGG 6 cut(s) 47, 316, 578, 612, 635, 1015
BstV1I GCAGC 4 cut(s) 123, 620, 749, 905
BstV2I GAAGAC 3 cut(s) 90, 314, 560
BstX2I RGATCY 2 cut(s) 162, 871
BstXI CCANNNNNNTGG 1 cut(s) 167
BstYI RGATCY 2 cut(s) 162, 871
BstZ17I GTATAC 1 cut(s) 979
BsuRI GGCC 6 cut(s) 29, 52, 171, 659, 714, 1015
BtgZI GCGATG 1 cut(s) 780
BtsCI GGATG 3 cut(s) 622, 764, 1007
BtsIMutI CAGTG 1 cut(s) 903
Cac8I GCNNGC 1 cut(s) 785
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 2 cut(s) 1013, 1046
CseI GACGC 1 cut(s) 976
Csp6I GTAC 1 cut(s) 854
CspAI ACCGGT 1 cut(s) 557
CviAII CATG 5 cut(s) 599, 655, 696, 700, 716
CviQI GTAC 1 cut(s) 854
DdeI CTNAG 3 cut(s) 549, 918, 1058
DpnI GATC 5 cut(s) 164, 438, 807, 873, 990
DpnII GATC 5 cut(s) 162, 436, 805, 871, 988
DraI TTTAAA 1 cut(s) 537
EaeI YGGCCR 3 cut(s) 50, 169, 657
Eam1104I CTCTTC 2 cut(s) 12, 534
EarI CTCTTC 2 cut(s) 12, 534
Eco130I CCWWGG 3 cut(s) 57, 166, 267
Eco147I AGGCCT 1 cut(s) 29
Eco32I GATATC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 1046
Eco57I CTGAAG 1 cut(s) 773
EcoRII CCWGG 4 cut(s) 47, 578, 612, 635
EcoRV GATATC 1 cut(s) 36
EcoT14I CCWWGG 3 cut(s) 57, 166, 267
EcoT22I ATGCAT 2 cut(s) 631, 701
ErhI CCWWGG 3 cut(s) 57, 166, 267
Esp3I CGTCTC 1 cut(s) 615
FaeI CATG 5 cut(s) 602, 658, 699, 703, 719
FalI AAGNNNNNCTT 4 cut(s) 318, 350, 729, 761
FaqI GGGAC 2 cut(s) 389, 755
FatI CATG 5 cut(s) 598, 654, 695, 699, 715
FauNDI CATATG 2 cut(s) 391, 631
FblI GTMKAC 1 cut(s) 978
Fnu4HI GCNGC 4 cut(s) 112, 609, 763, 894
FokI GGATG 3 cut(s) 629, 771, 1014
Fsp4HI GCNGC 4 cut(s) 112, 609, 763, 894
FspBI CTAG 2 cut(s) 587, 971
GluI GCNGC 4 cut(s) 112, 609, 763, 894
GsuI CTGGAG 1 cut(s) 601
HaeIII GGCC 6 cut(s) 29, 52, 171, 659, 714, 1015
HapII CCGG 3 cut(s) 317, 558, 1016
HgaI GACGC 1 cut(s) 976
Hin1II CATG 5 cut(s) 602, 658, 699, 703, 719
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 6 cut(s) 208, 240, 355, 416, 679, 692
HpaII CCGG 3 cut(s) 317, 558, 1016
HphI GGTGA 2 cut(s) 230, 857
Hpy166II GTNNAC 1 cut(s) 979
Hpy188I TCNGA 4 cut(s) 251, 283, 684, 921
Hpy188III TCNNGA 8 cut(s) 234, 326, 359, 486, 746, 878, 947, 1060
Hpy8I GTNNAC 1 cut(s) 979
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 5 cut(s) 68, 215, 451, 916, 992
HpyCH4III ACNGT 3 cut(s) 568, 907, 1046
HpyCH4IV ACGT 1 cut(s) 344
HpyCH4V TGCA 9 cut(s) 111, 389, 563, 608, 629, 654, 699, 893, 1005
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 3 cut(s) 549, 918, 1058
HpySE526I ACGT 1 cut(s) 344
Hsp92II CATG 5 cut(s) 602, 658, 699, 703, 719
Kzo9I GATC 5 cut(s) 162, 436, 805, 871, 988
LmnI GCTCC 1 cut(s) 188
Lsp1109I GCAGC 4 cut(s) 123, 620, 749, 905
LweI GCATC 3 cut(s) 616, 749, 992
MaeI CTAG 2 cut(s) 587, 971
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 3 cut(s) 97, 338, 592
MalI GATC 5 cut(s) 164, 438, 807, 873, 990
MboI GATC 5 cut(s) 162, 436, 805, 871, 988
MflI RGATCY 2 cut(s) 162, 871
MlsI TGGCCA 3 cut(s) 52, 171, 659
MluCI AATT 4 cut(s) 142, 379, 687, 829
MluNI TGGCCA 3 cut(s) 52, 171, 659
MlyI GAGTC 2 cut(s) 364, 686
MmeI TCCRAC 1 cut(s) 450
MnlI CCTC 4 cut(s) 253, 893, 995, 1047
Mox20I TGGCCA 3 cut(s) 52, 171, 659
Mph1103I ATGCAT 2 cut(s) 631, 701
MroXI GAANNNNTTC 1 cut(s) 873
MscI TGGCCA 3 cut(s) 52, 171, 659
MseI TTAA 2 cut(s) 536, 819
MslI CAYNNNNRTG 1 cut(s) 720
Msp20I TGGCCA 3 cut(s) 52, 171, 659
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 3 cut(s) 317, 558, 1016
MspR9I CCNGG 6 cut(s) 49, 318, 580, 614, 637, 1017
MvaI CCWGG 4 cut(s) 49, 580, 614, 637
MwoI GCNNNNNNNGC 1 cut(s) 665
NciI CCSGG 2 cut(s) 318, 1017
NdeI CATATG 2 cut(s) 391, 631
NdeII GATC 5 cut(s) 162, 436, 805, 871, 988
NlaIII CATG 5 cut(s) 602, 658, 699, 703, 719
NlaIV GGNNCC 1 cut(s) 1014
NmuCI GTSAC 1 cut(s) 97
NsiI ATGCAT 2 cut(s) 631, 701
PceI AGGCCT 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 873
PfeI GAWTC 4 cut(s) 208, 240, 416, 679
PflMI CCANNNNNTGG 1 cut(s) 779
PinAI ACCGGT 1 cut(s) 557
PkrI GCNGC 4 cut(s) 113, 610, 764, 895
PleI GAGTC 2 cut(s) 363, 686
PpsI GAGTC 2 cut(s) 363, 686
PshBI ATTAAT 1 cut(s) 819
Psp6I CCWGG 4 cut(s) 47, 578, 612, 635
PspGI CCWGG 4 cut(s) 47, 578, 612, 635
PspN4I GGNNCC 1 cut(s) 1014
PspPI GGNCC 2 cut(s) 1013, 1046
PsuI RGATCY 2 cut(s) 162, 871
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 1 cut(s) 855
RsaNI GTAC 1 cut(s) 854
RseI CAYNNNNRTG 1 cut(s) 720
SaqAI TTAA 2 cut(s) 536, 819
SatI GCNGC 4 cut(s) 112, 609, 763, 894
Sau3AI GATC 5 cut(s) 162, 436, 805, 871, 988
Sau96I GGNCC 2 cut(s) 1013, 1046
SchI GAGTC 2 cut(s) 364, 686
ScrFI CCNGG 6 cut(s) 49, 318, 580, 614, 637, 1017
SfaNI GCATC 3 cut(s) 616, 749, 992
SinI GGWCC 1 cut(s) 1046
SmiMI CAYNNNNRTG 1 cut(s) 720
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
Sse9I AATT 4 cut(s) 142, 379, 687, 829
SseBI AGGCCT 1 cut(s) 29
SsiI CCGC 2 cut(s) 102, 470
SspMI CTAG 2 cut(s) 587, 971
StuI AGGCCT 1 cut(s) 29
StyD4I CCNGG 6 cut(s) 47, 316, 578, 612, 635, 1015
StyI CCWWGG 3 cut(s) 57, 166, 267
TaaI ACNGT 3 cut(s) 568, 907, 1046
TaiI ACGT 1 cut(s) 347
TaqI TCGA 3 cut(s) 41, 189, 987
TasI AATT 4 cut(s) 142, 379, 687, 829
TatI WGTACW 1 cut(s) 853
TfiI GAWTC 4 cut(s) 208, 240, 416, 679
Tru1I TTAA 2 cut(s) 536, 819
Tru9I TTAA 2 cut(s) 536, 819
TscAI CASTG 1 cut(s) 910
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 4 cut(s) 111, 608, 762, 893
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 5 cut(s) 17, 121, 185, 447, 738
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 1 cut(s) 910
Van91I CCANNNNNTGG 1 cut(s) 779
VpaK11BI GGWCC 1 cut(s) 1046
VspI ATTAAT 1 cut(s) 819
XapI RAATTY 1 cut(s) 829
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 978
XmnI GAANNNNTTC 1 cut(s) 873
XspI CTAG 2 cut(s) 587, 971
Zsp2I ATGCAT 2 cut(s) 631, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.