Rh6CG306800

Protein BREAST CANCER SUSCEPTIBILITY 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007909
Physical Location & Seq
Forward (+)
48727642 .. 48733671
6030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG306800.1

Sequence Viewer

Length: 1740 bp
ATGGCCCAGTCCTCCGCCAAGCACTCTTCAGATTCCGGAAACTGCCGCAACGGCGTCGTTTCGCCGATGAACAAGAACCCCCTCACGTTTCATCTCCAGAAGCTCGGCCTCGAGCTCACTTGCCCTCTCTGCCTAGGGTTTTTTAATCGGCCGACATTGCTTCCCTGCAATCACATCTTCTGCAACAACTGTGTGCCCAATGGGACCAATTTGGGAGCAGAGTGTCCTCTGTGTAATATCCAAGTTCCTGGTCAAGATCTGAGGCATGCGCCTTTCATGGAAAGCATAGTAGCAATCTACAAAAGCATGAAGGCCACTTACTGTACCAACTCCTCCCAGCCTATATATTCAGATGTTAGAACAGCTTCGGGTCAAAACCCGGTTTCACCTGATGTCAGTTTTGCTGGGAAATCGACTAAAGAACTGTTTGACAATTGCCAAGAGGGTAAATCAGAAAGTGCTCAGACCATTGTTTCATCAAGGGGTAATAAGCGAGTATGGGTTCCATGTAGTCAGAAACATTCTGTTACAGATGGAATTGGCAAGCATGGCAAAGTAGATAACTGTAGCATAGCAATAGATGGTAACAGCGAAGAATTCGAGTTGGGTAGAGGACGTAAATTTAATGGTGGATTAAATCCCAATTCACCATTACCAAGTTCTCAAATAAGATCTGTGGGACTGGACGAGTGTATGACTTCAGAAAGAGACATGAATCCAGTAGTGCAGGCGTTGCTGGATAGTCCTCCTTCATTTGGTGATGCCAAATGTTCAGATAATGATAATAGCTTTGACCAGTGCTCTGAGCAAATTTCAGACAGTTTGATCAGGGGGTCAATGAGGAAAATTGATGATAGAACAGGGCAGATGAGGCCTGATAGTTCTGCATCTGATACTGATGGCCATTTGAGGGAACTCAAGAGACAGAAGAAACTGGACTATGGGCCAGTCTCAGGGACTAATTCTGAGCTGGAACTTAAATTCAGAACACCTTCTAATGAGTCTTTCACAAATAACACCATTTGTGCATTTTGCCAGTCTTCCACAATCTCAGAGGTCACTGGGCCAATGTTGCACTATTCCAAGGGAAAATTGGTGGAGGGAGATGATGCAGCTGTTTCAGATGTCATACATGTTCACAAAATATGCATTGATTGGGCACCACAAGTGTTCTTTAAAGATGAAACCATTAAAAATTTGAAGGCGGAAGTGACAAGGGGTGCAAGATTAAAATGCACCAAATGTGGGATAAAGGGAGCAGCCTTGGGATGCTTTGTGAAATCCTGCCGAAGAAGCTATCATGTTACCTGTGCAATTGAAATTTCCAAGTGCCGTTGGGATTATGAAAGCTTTCTTCTGCTGTGTCCAGCACATTGTTCAGTTAAATTTCCCAATGAGAAGTTGAATCGTAACAAGCACAAAAATTGTCAGCTCTCCGACAGTAGAGTCGCTTCAAATGGAGTGAACAACTGGGTTTTATGCCCTTCTGGTTTGTCTTCTGAAGAGAAGATTTTTCTTATCAAATTTGCTGAGATGAATGGTGCAACTTTGTCCAAGAGCTGGACACCTGATGTTACACATGTGATTGCTGCCCTGGATGGGGATGGTGCATATGTCCGGACGTTTAAAATTTTCATGGCCATTTTGGCAGGAAAATGGATAGTGACAATTGACTGTAAGCGATACGTAGATATTCTACCTTGTTGCTTCAATACATTTTTCTGTGGATTATTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000152 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009934 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010212 GO:0010332 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010565 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0010639 GO:0016020 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019827 GO:0022603 GO:0022607 GO:0022622 GO:0031056 GO:0031057 GO:0031058 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031401 GO:0031436 GO:0032259 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034622 GO:0034641 GO:0034968 GO:0035065 GO:0035066 GO:0035067 GO:0036211 GO:0042127 GO:0042304 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045717 GO:0045787 GO:0045833 GO:0045892 GO:0045893 GO:0045922 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046890 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051055 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051716 GO:0051726 GO:0060255 GO:0062012 GO:0062014 GO:0065003 GO:0065004 GO:0065007 GO:0070531 GO:0070647 GO:0071156 GO:0071158 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0080090 GO:0080182 GO:0090068 GO:0090304 GO:0097159 GO:0098727 GO:0099402 GO:0104004 GO:0140096 GO:1901360 GO:1901363 GO:1901564 GO:1901983 GO:1901984 GO:1901985 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1905269 GO:1905392 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2000758 GO:2001141 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03440 ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map03440 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169
Pfam Domains
Protein Families
BRCT BRCT_2 PTCB-BRCT zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-HC5HC2H zf-RING_UBOX

Protein Analysis

579

Amino Acids

63.62

Weight (kDa)

8.2

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_2 PF13923 41 - 78 1e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 41 - 78 1.2e-06 Zinc finger, C3HC4 type (RING finger)
zf-HC5HC2H_2 PF13832 373 - 440 1.5e-07 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 380 - 458 1.6e-09 PHD-like zinc-binding domain
BRCT PF00533 494 - 558 1.1e-06 BRCA1 C Terminus (BRCT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1445
AccB1I GGYRCC 1 cut(s) 1159
AccB7I CCANNNNNTGG 1 cut(s) 1560
AccIII TCCGGA 2 cut(s) 35, 1617
AciI CCGC 3 cut(s) 15, 46, 1205
AcoI YGGCCR 3 cut(s) 149, 901, 1638
AcsI RAATTY 9 cut(s) 596, 620, 810, 980, 1195, 1320, 1385, 1523, 1629
AcuI CTGAAG 3 cut(s) 12, 684, 1521
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 7 cut(s) 755, 910, 953, 1245, 1560, 1599, 1600
AflIII ACRYGT 2 cut(s) 1132, 1579
AgsI TTSAA 5 cut(s) 1201, 1319, 1405, 1455, 1711
AjnI CCWGG 2 cut(s) 247, 1593
Alw21I GWGCWC 3 cut(s) 117, 463, 803
Alw26I GTCTC 3 cut(s) 702, 916, 955
Ama87I CYCGRG 1 cut(s) 110
Aor13HI TCCGGA 2 cut(s) 35, 1617
AoxI GGCC 9 cut(s) 3, 106, 149, 312, 872, 901, 944, 1064, 1638
ApeKI GCWGC 3 cut(s) 1112, 1259, 1589
ApoI RAATTY 9 cut(s) 596, 620, 810, 980, 1195, 1320, 1385, 1523, 1629
Asp700I GAANNNNTTC 3 cut(s) 364, 991, 1350
AspA2I CCTAGG 1 cut(s) 133
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 4 cut(s) 4, 204, 944, 1064
AsuC2I CCSGG 1 cut(s) 380
AsuHPI GGTGA 3 cut(s) 378, 639, 770
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 1 cut(s) 204
AvrII CCTAGG 1 cut(s) 133
BaeGI GKGCMC 2 cut(s) 198, 1162
BalI TGGCCA 2 cut(s) 903, 1640
BanI GGYRCC 1 cut(s) 1159
BanII GRGCYC 1 cut(s) 117
BarI GAAGNNNNNNTAC 4 cut(s) 302, 334, 1435, 1467
BbsI GAAGAC 2 cut(s) 1032, 1488
Bbv12I GWGCWC 3 cut(s) 117, 463, 803
BbvI GCAGC 3 cut(s) 1124, 1271, 1576
BccI CCATC 5 cut(s) 527, 575, 893, 1592, 1598
BceAI ACGGC 2 cut(s) 67, 1317
BcgI CGANNNNNNTGC 2 cut(s) 37, 71
BciT130I CCWGG 2 cut(s) 249, 1595
BclI TGATCA 1 cut(s) 825
BcnI CCSGG 1 cut(s) 380
BcoDI GTCTC 3 cut(s) 702, 916, 955
BfaI CTAG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 565
BglI GCCNNNNNGGC 2 cut(s) 51, 1646
BglII AGATCT 2 cut(s) 256, 671
BisI GCNGC 4 cut(s) 46, 1113, 1260, 1590
BlnI CCTAGG 1 cut(s) 133
BlsI GCNGC 4 cut(s) 47, 1114, 1261, 1591
Bme1390I CCNGG 3 cut(s) 249, 380, 1595
Bme18I GGWCC 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 4 cut(s) 4, 204, 944, 1064
BmiI GGNNCC 3 cut(s) 205, 504, 1161
BmrFI CCNGG 3 cut(s) 249, 380, 1595
BmrI ACTGGG 2 cut(s) 1071, 1480
BmsI GCATC 4 cut(s) 751, 896, 1099, 1259
BmuI ACTGGG 2 cut(s) 1071, 1480
BpiI GAAGAC 2 cut(s) 1032, 1488
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 902
BpuMI CCSGG 1 cut(s) 380
BsaAI YACGTR 1 cut(s) 1687
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 4 cut(s) 133, 1083, 1263, 1593
BsaWI WCCGGW 2 cut(s) 35, 1617
Bsc4I CCNNNNNNNGG 7 cut(s) 755, 910, 953, 1245, 1560, 1599, 1600
Bse1I ACTGG 9 cut(s) 7, 687, 719, 796, 939, 947, 1036, 1066, 1475
Bse3DI GCAATG 1 cut(s) 155
BseAI TCCGGA 2 cut(s) 35, 1617
BseBI CCWGG 2 cut(s) 249, 1595
BseDI CCNNGG 4 cut(s) 133, 1083, 1263, 1593
BseGI GGATG 3 cut(s) 1274, 1603, 1609
BseLI CCNNNNNNNGG 7 cut(s) 755, 910, 953, 1245, 1560, 1599, 1600
BseMI GCAATG 1 cut(s) 155
BseMII CTCAG 7 cut(s) 251, 476, 795, 957, 966, 1065, 1521
BseNI ACTGG 9 cut(s) 7, 687, 719, 796, 939, 947, 1036, 1066, 1475
BseRI GAGGAG 1 cut(s) 322
BseSI GKGCMC 2 cut(s) 198, 1162
BseX3I CGGCCG 1 cut(s) 149
BseXI GCAGC 3 cut(s) 1124, 1271, 1576
BseYI CCCAGC 2 cut(s) 336, 404
BsgI GTGCAG 1 cut(s) 746
Bsh1285I CGRYCG 1 cut(s) 152
BshFI GGCC 9 cut(s) 5, 108, 151, 314, 874, 903, 946, 1066, 1640
BshNI GGYRCC 1 cut(s) 1159
BsiEI CGRYCG 1 cut(s) 152
BsiHKAI GWGCWC 3 cut(s) 117, 463, 803
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 3 cut(s) 36, 380, 1618
BslFI GGGAC 3 cut(s) 217, 693, 970
BslI CCNNNNNNNGG 7 cut(s) 755, 910, 953, 1245, 1560, 1599, 1600
BsmAI GTCTC 3 cut(s) 702, 916, 955
BsmFI GGGAC 3 cut(s) 217, 693, 970
BsnI GGCC 9 cut(s) 5, 108, 151, 314, 874, 903, 946, 1066, 1640
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 5 cut(s) 117, 198, 463, 803, 1162
Bsp13I TCCGGA 2 cut(s) 35, 1617
Bsp143I GATC 3 cut(s) 256, 671, 825
BspACI CCGC 3 cut(s) 15, 46, 1205
BspANI GGCC 9 cut(s) 5, 108, 151, 314, 874, 903, 946, 1066, 1640
BspCNI CTCAG 7 cut(s) 252, 475, 796, 958, 965, 1064, 1522
BspEI TCCGGA 2 cut(s) 35, 1617
BspLI GGNNCC 3 cut(s) 205, 504, 1161
BspT107I GGYRCC 1 cut(s) 1159
BsrDI GCAATG 1 cut(s) 155
BsrI ACTGG 9 cut(s) 7, 687, 719, 796, 939, 947, 1036, 1066, 1475
BssECI CCNNGG 4 cut(s) 133, 1083, 1263, 1593
BssMI GATC 3 cut(s) 256, 671, 825
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 3 cut(s) 133, 1083, 1263
Bst2UI CCWGG 2 cut(s) 249, 1595
Bst4CI ACNGT 7 cut(s) 191, 323, 426, 566, 821, 1442, 1676
Bst6I CTCTTC 2 cut(s) 31, 1497
BstACI GRCGYC 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 733
BstBAI YACGTR 1 cut(s) 1687
BstC8I GCNNGC 3 cut(s) 267, 545, 729
BstDEI CTNAG 7 cut(s) 260, 462, 804, 952, 966, 1051, 1530
BstF5I GGATG 3 cut(s) 1274, 1603, 1609
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 3 cut(s) 259, 674, 828
BstMAI GTCTC 3 cut(s) 702, 916, 955
BstMBI GATC 3 cut(s) 256, 671, 825
BstMCI CGRYCG 1 cut(s) 152
BstMWI GCNNNNNNNGC 9 cut(s) 51, 129, 157, 549, 733, 871, 1072, 1293, 1646
BstNI CCWGG 2 cut(s) 249, 1595
BstNSI RCATGY 3 cut(s) 269, 1136, 1583
BstSCI CCNGG 3 cut(s) 247, 378, 1593
BstSFI CTRYAG 1 cut(s) 565
BstSLI GKGCMC 2 cut(s) 198, 1162
BstSNI TACGTA 1 cut(s) 1687
BstV1I GCAGC 3 cut(s) 1124, 1271, 1576
BstV2I GAAGAC 2 cut(s) 1032, 1488
BstX2I RGATCY 2 cut(s) 256, 671
BstXI CCANNNNNNTGG 1 cut(s) 248
BstYI RGATCY 2 cut(s) 256, 671
BstZI CGGCCG 1 cut(s) 149
BsuRI GGCC 9 cut(s) 5, 108, 151, 314, 874, 903, 946, 1066, 1640
BtsCI GGATG 3 cut(s) 1274, 1603, 1609
BtsIMutI CAGTG 2 cut(s) 803, 1059
Cac8I GCNNGC 3 cut(s) 267, 545, 729
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 4 cut(s) 4, 204, 944, 1064
CseI GACGC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 324
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 7 cut(s) 260, 462, 804, 952, 966, 1051, 1530
DpnI GATC 3 cut(s) 258, 673, 827
DpnII GATC 3 cut(s) 256, 671, 825
DraI TTTAAA 2 cut(s) 1177, 1627
DrdI GACNNNNNNGTC 1 cut(s) 1445
DseDI GACNNNNNNGTC 1 cut(s) 1445
EaeI YGGCCR 3 cut(s) 149, 901, 1638
EagI CGGCCG 1 cut(s) 149
Eam1104I CTCTTC 2 cut(s) 31, 1497
EarI CTCTTC 2 cut(s) 31, 1497
EciI GGCGGA 2 cut(s) 4, 1220
Ecl136II GAGCTC 1 cut(s) 115
EclXI CGGCCG 1 cut(s) 149
Eco105I TACGTA 1 cut(s) 1687
Eco130I CCWWGG 3 cut(s) 133, 1083, 1263
Eco147I AGGCCT 1 cut(s) 874
Eco24I GRGCYC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 204
Eco52I CGGCCG 1 cut(s) 149
Eco53kI GAGCTC 1 cut(s) 115
Eco57I CTGAAG 3 cut(s) 12, 684, 1521
Eco88I CYCGRG 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 115
EcoRI GAATTC 1 cut(s) 596
EcoRII CCWGG 2 cut(s) 247, 1593
EcoT14I CCWWGG 3 cut(s) 133, 1083, 1263
EcoT22I ATGCAT 1 cut(s) 1151
EcoT38I GRGCYC 1 cut(s) 117
ErhI CCWWGG 3 cut(s) 133, 1083, 1263
FaqI GGGAC 3 cut(s) 217, 693, 970
FauNDI CATATG 1 cut(s) 1612
FbaI TGATCA 1 cut(s) 825
Fnu4HI GCNGC 4 cut(s) 46, 1113, 1260, 1590
FokI GGATG 3 cut(s) 1281, 1610, 1616
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 4 cut(s) 46, 1113, 1260, 1590
FspBI CTAG 1 cut(s) 134
GlaI GCGC 1 cut(s) 270
GluI GCNGC 4 cut(s) 46, 1113, 1260, 1590
GsaI CCCAGC 2 cut(s) 340, 408
GsuI CTGGAG 1 cut(s) 80
HaeIII GGCC 9 cut(s) 5, 108, 151, 314, 874, 903, 946, 1066, 1640
HapII CCGG 3 cut(s) 36, 380, 1618
HgaI GACGC 1 cut(s) 43
HhaI GCGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 54
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HindIII AAGCTT 1 cut(s) 1348
HinfI GANTC 5 cut(s) 32, 715, 1001, 1405, 1446
HpaII CCGG 3 cut(s) 36, 380, 1618
HphI GGTGA 3 cut(s) 378, 639, 770
Hpy166II GTNNAC 2 cut(s) 1138, 1465
Hpy188III TCNNGA 5 cut(s) 36, 97, 254, 919, 1618
Hpy8I GTNNAC 2 cut(s) 1138, 1465
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 5 cut(s) 304, 759, 1002, 1195, 1494
HpyCH4III ACNGT 7 cut(s) 191, 323, 426, 566, 821, 1442, 1676
HpyCH4IV ACGT 4 cut(s) 86, 616, 1622, 1686
HpyF10VI GCNNNNNNNGC 9 cut(s) 51, 129, 157, 549, 733, 871, 1072, 1293, 1646
HpyF3I CTNAG 7 cut(s) 260, 462, 804, 952, 966, 1051, 1530
HpySE526I ACGT 4 cut(s) 86, 616, 1622, 1686
Hsp92I GRCGYC 1 cut(s) 54
HspAI GCGC 1 cut(s) 269
Kpn2I TCCGGA 2 cut(s) 35, 1617
Ksp22I TGATCA 1 cut(s) 825
Kzo9I GATC 3 cut(s) 256, 671, 825
LmnI GCTCC 2 cut(s) 215, 1256
Lsp1109I GCAGC 3 cut(s) 1124, 1271, 1576
LweI GCATC 4 cut(s) 751, 896, 1099, 1259
MaeI CTAG 1 cut(s) 134
MaeII ACGT 4 cut(s) 86, 616, 1622, 1686
MaeIII GTNAC 8 cut(s) 526, 584, 1057, 1210, 1303, 1409, 1573, 1663
MalI GATC 3 cut(s) 258, 673, 827
MboI GATC 3 cut(s) 256, 671, 825
MfeI CAATTG 3 cut(s) 433, 1314, 1668
MflI RGATCY 2 cut(s) 256, 671
MhlI GDGCHC 5 cut(s) 117, 198, 463, 803, 1162
MlsI TGGCCA 2 cut(s) 903, 1640
MluNI TGGCCA 2 cut(s) 903, 1640
MlyI GAGTC 2 cut(s) 1010, 1455
MmeI TCCRAC 1 cut(s) 1461
Mox20I TGGCCA 2 cut(s) 903, 1640
Mph1103I ATGCAT 1 cut(s) 1151
MroI TCCGGA 2 cut(s) 35, 1617
MroXI GAANNNNTTC 3 cut(s) 364, 991, 1350
MscI TGGCCA 2 cut(s) 903, 1640
MseI TTAA 9 cut(s) 144, 624, 635, 978, 1176, 1191, 1229, 1383, 1626
Msp20I TGGCCA 2 cut(s) 903, 1640
MspA1I CMGCKG 1 cut(s) 1115
MspI CCGG 3 cut(s) 36, 380, 1618
MspR9I CCNGG 3 cut(s) 249, 380, 1595
MunI CAATTG 3 cut(s) 433, 1314, 1668
MvaI CCWGG 2 cut(s) 249, 1595
MwoI GCNNNNNNNGC 9 cut(s) 51, 129, 157, 549, 733, 871, 1072, 1293, 1646
NciI CCSGG 1 cut(s) 380
NdeI CATATG 1 cut(s) 1612
NdeII GATC 3 cut(s) 256, 671, 825
NlaIV GGNNCC 3 cut(s) 205, 504, 1161
NmeAIII GCCGAG 1 cut(s) 84
NmuCI GTSAC 3 cut(s) 1057, 1210, 1663
NsiI ATGCAT 1 cut(s) 1151
NspI RCATGY 3 cut(s) 269, 1136, 1583
PaeI GCATGC 1 cut(s) 269
PaeR7I CTCGAG 1 cut(s) 110
PceI AGGCCT 1 cut(s) 874
PciI ACATGT 2 cut(s) 1132, 1579
PdmI GAANNNNTTC 3 cut(s) 364, 991, 1350
PfeI GAWTC 3 cut(s) 32, 715, 1405
PflMI CCANNNNNTGG 1 cut(s) 1560
PkrI GCNGC 4 cut(s) 47, 1114, 1261, 1591
PleI GAGTC 2 cut(s) 1009, 1454
PpsI GAGTC 2 cut(s) 1009, 1454
Ppu21I YACGTR 1 cut(s) 1687
PscI ACATGT 2 cut(s) 1132, 1579
Psp124BI GAGCTC 1 cut(s) 117
Psp6I CCWGG 2 cut(s) 247, 1593
PspFI CCCAGC 2 cut(s) 336, 404
PspGI CCWGG 2 cut(s) 247, 1593
PspN4I GGNNCC 3 cut(s) 205, 504, 1161
PspPI GGNCC 4 cut(s) 4, 204, 944, 1064
PspXI VCTCGAGB 1 cut(s) 110
PsuI RGATCY 2 cut(s) 256, 671
PvuII CAGCTG 1 cut(s) 1115
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SacI GAGCTC 1 cut(s) 117
SaqAI TTAA 9 cut(s) 144, 624, 635, 978, 1176, 1191, 1229, 1383, 1626
SatI GCNGC 4 cut(s) 46, 1113, 1260, 1590
Sau3AI GATC 3 cut(s) 256, 671, 825
Sau96I GGNCC 4 cut(s) 4, 204, 944, 1064
SchI GAGTC 2 cut(s) 1010, 1455
ScrFI CCNGG 3 cut(s) 249, 380, 1595
SduI GDGCHC 5 cut(s) 117, 198, 463, 803, 1162
SfaNI GCATC 4 cut(s) 751, 896, 1099, 1259
SfcI CTRYAG 1 cut(s) 565
Sfr274I CTCGAG 1 cut(s) 110
SinI GGWCC 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 110, 917
SmoI CTYRAG 2 cut(s) 110, 917
SnaBI TACGTA 1 cut(s) 1687
SphI GCATGC 1 cut(s) 269
SseBI AGGCCT 1 cut(s) 874
SsiI CCGC 3 cut(s) 15, 46, 1205
SspMI CTAG 1 cut(s) 134
SstI GAGCTC 1 cut(s) 117
StuI AGGCCT 1 cut(s) 874
StyD4I CCNGG 3 cut(s) 247, 378, 1593
StyI CCWWGG 3 cut(s) 133, 1083, 1263
TaaI ACNGT 7 cut(s) 191, 323, 426, 566, 821, 1442, 1676
TaiI ACGT 4 cut(s) 89, 619, 1625, 1689
TaqI TCGA 3 cut(s) 111, 413, 600
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 3 cut(s) 32, 715, 1405
Tru1I TTAA 9 cut(s) 144, 624, 635, 978, 1176, 1191, 1229, 1383, 1626
Tru9I TTAA 9 cut(s) 144, 624, 635, 978, 1176, 1191, 1229, 1383, 1626
TscAI CASTG 2 cut(s) 803, 1066
TseFI GTSAC 3 cut(s) 1057, 1210, 1663
TseI GCWGC 3 cut(s) 1112, 1259, 1589
Tsp45I GTSAC 3 cut(s) 1057, 1210, 1663
TspRI CASTG 2 cut(s) 803, 1066
Van91I CCANNNNNTGG 1 cut(s) 1560
VpaK11BI GGWCC 1 cut(s) 204
XapI RAATTY 9 cut(s) 596, 620, 810, 980, 1195, 1320, 1385, 1523, 1629
XceI RCATGY 3 cut(s) 269, 1136, 1583
XcmI CCANNNNNNNNNTGG 1 cut(s) 1090
XhoI CTCGAG 1 cut(s) 110
XmaJI CCTAGG 1 cut(s) 133
XmnI GAANNNNTTC 3 cut(s) 364, 991, 1350
XspI CTAG 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.